Lig3 (DNA ligase 3) - Rat Genome Database

Name: Lig3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Lig3 (DNA ligase 3) Rattus norvegicus

Analyze

Symbol:

Lig3

Name:

DNA ligase 3

RGD ID:

1309875

Description:

Enables DNA ligase activity. Involved in base-excision repair, DNA ligation. Located in nucleus. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human LIG3 (DNA ligase 3); PARTICIPATES IN nucleotide excision repair pathway; base excision repair pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4-hydroperoxycyclophosphamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

DNA ligase (ATP) 3; ligase III, DNA, ATP-dependent; LOC303369

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LIG3 (DNA ligase 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Lig3 (ligase III, DNA, ATP-dependent)	HGNC	EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Lig3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LIG3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LIG3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lig3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LIG3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LIG3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lig3 (DNA ligase 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	LIG3 (DNA ligase 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Lig3 (ligase III, DNA, ATP-dependent)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	lig3 (ligase III, DNA, ATP-dependent)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	K07C5.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PhylomeDB)
Drosophila melanogaster (fruit fly):	DNAlig3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	67,717,796 - 67,741,141 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	67,717,812 - 67,798,414 (+)	Ensembl
Rnor_6.0	10	70,134,734 - 70,158,051 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	70,134,729 - 70,158,055 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	69,765,441 - 69,788,758 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	71,000,287 - 71,021,398 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	71,013,909 - 71,035,020 (+)	NCBI
Celera	10	66,662,184 - 66,683,295 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cardiac Arrhythmias (ISO)

Neurodevelopmental Disorders (ISO)

pancreatic cancer (ISO)

Reperfusion Injury (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

17alpha-ethynylestradiol (ISO)

1H-pyrazole (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroperoxycyclophosphamide (EXP)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

aristolochic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

C60 fullerene (EXP)

carbon nanotube (ISO)

chlorpyrifos (ISO)

clofibrate (ISO)

curcumin (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

genistein (ISO)

glyphosate (ISO)

indometacin (ISO)

iron atom (ISO)

iron(0) (ISO)

ivermectin (ISO)

methyl methanesulfonate (ISO)

Methylazoxymethanol acetate (EXP)

miconazole (EXP)

monocrotophos (ISO)

N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

potassium bromate (ISO)

potassium chromate (ISO)

rotenone (EXP)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

sodium fluoride (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

base-excision repair, DNA ligation (IBA,IDA,ISO)

DNA biosynthetic process (IEA)

DNA ligation (IBA,ISO)

double-strand break repair (ISO)

double-strand break repair via alternative nonhomologous end joining (IBA,ISO)

double-strand break repair via nonhomologous end joining (ISO)

lagging strand elongation (IBA)

mitochondrial DNA repair (IBA,ISO)

mitochondrion organization (ISO)

negative regulation of DNA recombination (ISO)

negative regulation of mitochondrial DNA replication (ISO)

V(D)J recombination (ISO)

Cellular Component

condensed nuclear chromosome (ISO)

cytoplasm (IBA)

DNA ligase III-XRCC1 complex (IBA,ISO)

mitochondrion (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IDA,ISO)

synaptonemal complex (ISO)

Molecular Function

ATP binding (IEA)

DNA binding (IEA)

DNA ligase (ATP) activity (IBA,ISO)

DNA ligase activity (IDA,ISO)

protein binding (ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

base excision repair pathway (IEA)

nucleotide excision repair pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Lehmann AR DNA Repair (Amst). 2011 Jul 15;10(7):730-3. doi: 10.1016/j.dnarep.2011.04.023. Epub 2011 May 20.
4.	Li D, etal., Clin Cancer Res. 2009 Jan 15;15(2):740-6.
5.	Li N, etal., DNA Repair (Amst). 2007 Sep 1;6(9):1297-306. Epub 2007 Apr 6.
6.	OMIM Disease Annotation Pipeline
7.	Pipeline to import KEGG annotations from KEGG into RGD
8.	RGD automated data pipeline
9.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10.	RGD automated import pipeline for gene-chemical interactions
11.	RGD comprehensive gene curation

Additional References at PubMed

PMID:7565692	PMID:8532526	PMID:9001252	PMID:9809069	PMID:10207110	PMID:12477932	PMID:16648486	PMID:19589734	PMID:21390131	PMID:21390132	PMID:21655080	PMID:21878356
PMID:24674627	PMID:24837021

Genomics

Candidate Gene Status

Lig3 is a candidate Gene for QTL Bp301

Comparative Map Data

Lig3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	67,717,796 - 67,741,141 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	67,717,812 - 67,798,414 (+)	Ensembl
Rnor_6.0	10	70,134,734 - 70,158,051 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	70,134,729 - 70,158,055 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	69,765,441 - 69,788,758 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	71,000,287 - 71,021,398 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	71,013,909 - 71,035,020 (+)	NCBI
Celera	10	66,662,184 - 66,683,295 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

LIG3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	34,980,512 - 35,009,743 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	34,980,504 - 35,009,743 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	33,307,531 - 33,336,762 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	30,331,651 - 30,356,201 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	17	30,331,696 - 30,355,936	NCBI
Celera	17	30,217,714 - 30,242,284 (+)	NCBI
Cytogenetic Map	17	q12	NCBI
HuRef	17	29,493,447 - 29,518,012 (+)	NCBI		HuRef
CHM1_1	17	33,371,911 - 33,396,481 (+)	NCBI		CHM1_1

Lig3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	82,671,935 - 82,695,100 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	82,671,934 - 82,695,100 (+)	Ensembl
GRCm38	11	82,781,109 - 82,804,274 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	82,781,108 - 82,804,274 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	82,594,637 - 82,617,776 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	82,597,330 - 82,620,469 (+)	NCBI			mm8
Celera	11	92,400,612 - 92,423,646 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	50.23	NCBI

Lig3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	9,696,054 - 9,715,637 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	9,696,050 - 9,716,154 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIG3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	22,073,487 - 22,097,754 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	22,074,046 - 22,095,220 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	21,776,483 - 21,805,706 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

LIG3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	38,346,275 - 38,366,634 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	38,346,199 - 38,366,193 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	37,569,261 - 37,590,027 (-)	NCBI
ROS_Cfam_1.0	9	39,158,185 - 39,178,954 (-)	NCBI
UMICH_Zoey_3.1	9	37,940,790 - 37,961,563 (-)	NCBI
UNSW_CanFamBas_1.0	9	38,226,708 - 38,247,470 (-)	NCBI
UU_Cfam_GSD_1.0	9	38,314,196 - 38,334,891 (-)	NCBI

Lig3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	37,328,228 - 37,350,583 (-)	NCBI
SpeTri2.0	NW_004936538	206,179 - 228,487 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIG3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	40,147,681 - 40,183,622 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	40,153,105 - 40,205,077 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	41,714,491 - 41,773,847 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIG3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	28,487,953 - 28,511,945 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	16	28,490,434 - 28,511,130 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666075	1,476,469 - 1,500,221 (-)	NCBI	Vero_WHO_p1.0

Lig3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624875	2,871,944 - 2,907,757 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D10Chm170

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,720,219 - 67,720,443 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,137,131 - 70,137,354	NCBI	Rnor6.0
Rnor_5.0	10	69,767,838 - 69,768,061	UniSTS	Rnor5.0
RGSC_v3.4	10	71,002,650 - 71,002,873	UniSTS	RGSC3.4
Celera	10	66,664,547 - 66,664,770	UniSTS
Cytogenetic Map	10	q26	UniSTS

BE109015

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,728,917 - 67,729,074 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,145,829 - 70,145,985	NCBI	Rnor6.0
Rnor_5.0	10	69,776,536 - 69,776,692	UniSTS	Rnor5.0
RGSC_v3.4	10	71,011,348 - 71,011,504	UniSTS	RGSC3.4
Celera	10	66,673,245 - 66,673,401	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH134877

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,716,622 - 67,716,808 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,133,534 - 70,133,719	NCBI	Rnor6.0
Rnor_5.0	10	69,764,241 - 69,764,426	UniSTS	Rnor5.0
RGSC_v3.4	10	70,999,053 - 70,999,238	UniSTS	RGSC3.4
Celera	10	66,660,950 - 66,661,135	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH141104

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,739,005 - 67,739,212 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,155,916 - 70,156,122	NCBI	Rnor6.0
Rnor_5.0	10	69,786,623 - 69,786,829	UniSTS	Rnor5.0
RGSC_v3.4	10	71,021,435 - 71,021,641	UniSTS	RGSC3.4
Celera	10	66,683,332 - 66,683,538	UniSTS
Cytogenetic Map	10	q26	UniSTS

MARC_3929-3930:996679185:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,733,525 - 67,734,591 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,150,436 - 70,151,501	NCBI	Rnor6.0
Rnor_5.0	10	69,781,143 - 69,782,208	UniSTS	Rnor5.0
RGSC_v3.4	10	71,015,955 - 71,017,020	UniSTS	RGSC3.4
Celera	10	66,677,852 - 66,678,917	UniSTS
Cytogenetic Map	10	q26	UniSTS

Lig3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	67,727,114 - 67,727,979 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	70,144,026 - 70,144,890	NCBI	Rnor6.0
Rnor_5.0	10	69,774,733 - 69,775,597	UniSTS	Rnor5.0
RGSC_v3.4	10	71,009,545 - 71,010,409	UniSTS	RGSC3.4
Celera	10	66,671,442 - 66,672,306	UniSTS
Cytogenetic Map	10	q26	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	10	49444551	81709989	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49444551	81709989	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	49444551	81709989	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
1331839	Eae18b	Experimental allergic encephalomyelitis QTL 18b	5.8	0.03	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	61248303	67785171	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61345276	81714865	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61345413	82564856	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	65927233	82565079	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66319447	67750281	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66319447	67750281	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66319447	67750281	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66319447	67750281	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66319447	67750281	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66319447	68164786	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66319447	68164786	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66319447	68164786	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66319447	68164786	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	66743655	98003205	Rat
631565	Hcuc4	Hepatic copper content QTL 4	4.15		hepatic copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	10	66941813	73452992	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	66978955	67750281	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
1579917	Bp282	Blood pressure QTL 282		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67400316	68164786	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67502108	73579767	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	453
Count of miRNA genes:	240
Interacting mature miRNAs:	280
Transcripts:	ENSRNOT00000055982
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	29	51	35	19	35	5	5	74	35	41	11	5
Low		14	6	6		6	3	6					3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001394035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001394036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_172067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000055982 ⟹ ENSRNOP00000052836

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	67,717,857 - 67,738,968 (+)	Ensembl
Rnor_6.0 Ensembl	10	70,134,768 - 70,155,881 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076703 ⟹ ENSRNOP00000068142

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	70,153,427 - 70,154,512 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076739 ⟹ ENSRNOP00000068489

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	67,717,812 - 67,741,142 (+)	Ensembl
Rnor_6.0 Ensembl	10	70,134,729 - 70,158,055 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084076 ⟹ ENSRNOP00000069379

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	67,717,812 - 67,798,414 (+)	Ensembl
Rnor_6.0 Ensembl	10	70,136,855 - 70,156,772 (+)	Ensembl

RefSeq Acc Id:

NM_001012011 ⟹ NP_001012011

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,717,857 - 67,738,969 (+)	NCBI
Rnor_6.0	10	70,134,768 - 70,155,879 (+)	NCBI
Rnor_5.0	10	69,765,441 - 69,788,758 (+)	NCBI
RGSC_v3.4	10	71,000,287 - 71,021,398 (+)	RGD
Celera	10	66,662,184 - 66,683,295 (+)	RGD

Sequence:

show sequence

GCAAGGCCCGTGGCCTTGTGGGCTCCTGGTCCGGTGGCCGGTGCGGAGCGTCAGAGCCAGGGCA
GCCGAGAAGGCAGCTATATGACTTTGGCCTTTAAGACCCTCTTCCCGAGAAACCTCTGTGCCCT
TGGCAGAAAAGAACTGTGCCTGTTTTCAGAACAGCATCACTGGCCTGCCATAAGACAGTTCAGC
CAGTGGTCGGAAACAAATCTCCTTTGTGGGTGCTGCCTCCTCCAGAGAAGAAAGCCTGTCCTAT
CTTTCCAGAGAGGTCATCTAAGACCACGTGCCACCCACCTTATTTCGTGGTCAGGGTCGCATGT
GGGACTCTGTACTGGCCCCTGTGAGATGGCCGAACAGCGGTTCTGTGTGGACTATGCCAAGCGG
GGCACAGCTGGCTGCAAGAAATGCAAGGAGAAGATTGTAAAGGGCGTATGCCGCATTGGCAAAG
TGGTACCCAATCCCTTCTCAGAGTCTGGGGGTGATATGAAAGAGTGGTACCACATTAAGTGCAT
GTTTGAGAAACTGGAGCGGGCGCGGGCCACCACAAAAAAAATTGAAGACCTCACAGAGCTGGAA
GGCTGGGAAGAGCTGGAAGATAATGAAAAGGAACAGATAAGCCAGCACATTGCAGACCTGTCTT
CCAAGACAGCTGCCACACCGAAGAAGAAAGCTACTGTCCAGGCTAAGCTGACAACCACTGGCCA
AGTGACATCACCAGTGAAAGGCGCTTCGTTTATTACCAGTACCAATCCCCGGAAATTTTCTGGC
TTTTCAGCAGCCAAACCGAACAACTCTGAGCAAGACCCCTCAAGCCCTGCTCCTAAGACCAGTC
TGTCCGCAAGTAAATGTGACCCTAAGCACAAAGATTGTCTACTACGAGAATTCCGGAAGCTGTG
TGCCATGGTAGCTGAAAATCCTAGCTATAACACCAAGACCCAGATCATCCACGACTTCTTGCAG
AAAGGCTCCACAGGAGATGGCTTCCGAGGCGATGTGTACCTGACAGTGAAGCTGCTGCTGCCTG
GTGTCATCAAGAGTGTGTACAACTTGAATGATAAGCAGATAGTGAAACTGTTCAGCCGAATTTT
TAACTGCAACCCAGATGATATGGCCCGGGACCTAGAACAGGGTGACGTGTCCGAGACGATCAGA
GTCTTCTTTGAGCAGAGCAAGTCTTTTCCCCCAGCTGCCAAAAGCCTCCTCACCATCCAGGAGG
TGGATGCATTTCTTCTGCACCTCTCCAAGCTCACCAAAGAGGATGAGCAGCAGCAGGCCCTGCA
GGACATTGCTTCCAGGTGTACAGCCAATGACCTTAAGTGCATTATCCGGCTGATCAAACACGAT
CTGAAGATGAACTCGGGTGCAAAACACGTGTTAGATGCCCTTGACCCCAATGCTTATGAAGCCT
TCAAAGCATCACGCAACCTGCAGGATGTGGTGGAGCGGGTCCTTCACAATGAGCAGGAGGTGGA
GAAGGACCCAGGCCGGCGTCGGGCTCTGAGTGTCCAGGCCTCATTGATGACACCTGTGCAACCC
ATGCTGGCTGAGGCCTGCAAGTCCATTGAGTATGCAATGAAGAAGTGTCCCAATGGCATGTTCT
CTGAGATCAAGTACGATGGTGAGCGAGTCCAGGTGCATAAGAAGGGAGACCATTTCAGCTACTT
CAGCCGCAGTCTCAAGCCTGTCTTGCCTCACAAGGTGGCCCACTTTAAGGACTATATTCCCAAA
GCGTTTCCTGGGGGTCAAAGCATGATCTTGGACTCTGAAGTGCTCCTGATTGATAACAACACAG
GCAAACCACTGCCCTTTGGGACCCTGGGAGTACACAAGAAAGCTGCTTTCCAGGATGCTAATGT
CTGCCTGTTTGTTTTTGATTGTATCTACTTTAATGATGTCAGCTTGATGGACAGGCCTCTCTGT
GAGCGACGGAAGTTTCTTCATGATAACATGGTTGAAATCCGTAACCGGATCATGTTCTCAGAAA
TGAAGCAAGTCACAAAAGCTTCAGACCTGGCTGACATGATAAACCGGGTGATCCGAGAGGGCCT
GGAAGGTTTGGTGCTAAAGGATGTGAAGGGTACATATGAGCCTGGAAAACGACACTGGCTGAAA
GTTAAGAAAGACTATTTGAACGAGGGGGCCATGGCTGATACAGCTGATCTGGTGGTTCTTGGGG
CCTTCTATGGGCAAGGGAGCAAAGGTGGAATGATGTCCATCTTCCTCATGGGCTGCTATGACCC
CGACAGCCAGAAGTGGTGCACTGTTACAAAATGTGCTGGAGGCCATGACGATGCCACACTTGCC
CGCCTGCAGAAAGAGCTAGATATGGTGAAGATTAGCAAGGATCCTAGCAAGATACCCAGCTGGC
TGAAGATCAACAAGATCTACTATCCTGACTTTATCGTCCCAGACCCAAAGAAAGCTGCTGTGTG
GGAGATCACAGGAGCAGAATTCTCTCGATCTGAGGCGCATACTGCTGATGGGATCTCCATCCGA
TTTCCTCGATGCACCCGAATCCGGGATGACAAGGACTGGAAATCTGCCACTAACCTCCCCCAAC
TCAAGGAACTGTACCAGCTGTCCAAAGACAAGGCAGACTTCGCTGTGGTGGCTGGAGATGAGGG
GAGCTCCACTACTGGAGGCAGCAATGGTGAGAATGAGGGCACTGCTGGGTCTACTGTGCCCCGC
AAGGGCCCCAAGGGACCCCCCAGTAAGTCCTCTGCCAGTGCCAAGAAGACTGAACAGAAGCTGA
ATGATCCCAGTAGCAGAGGTGGAGAGAAGCTGGCTGTGAAGTCTTCTCCTGTCAAAGTGGGGAT
GAAGAGGAAAGCTGCTGATGAGACCCCAGGCCTGACAAAGAGGCGGCGGGCCAGCCGGCAAAGA
GGAAGGAGAGCTATGCGAACAGGCAGGAGATAGAGCTGGCCTAGCAGGAGGCTGAAAGCCCACC
CAGCCGCAGTGTTGTTAACAGTTCACATTAAAGAAGGAAGCCCACTGTGGCGGTGGGGTGCAGC
ACGTTTGTGTCTGTCTCTCCGAGCAGGTCTACCCAGCAAAGAGAAGGGAGACTGCCATGACATA
GACAACAGCTGAGGAGCCTGTTTTCCCTTTCGACAGTCCCTGGTCTGGCAACATCGATTGAGAA
CCTGAGATCAGGAACTACTAGCTAGTCTATGGCGCTGTTGGATGTCTTCACTGGGGTGAGGCTC
TACTTGCCACCTTCTACACCAGACTTCAGACGGCTCAAACGTTACTTTGTGGCATTCAACGGGG
ACCTGGTACAGGAATTTGACATGGCCTCAGCCACACATGTGCTGGGTAACAGGGACAAGAACAC
TGATGCCCAGTTGGTCTCTTCAGAGTGGATTTGGGCATGCATCCGGAAACGGAGGCTGGTAGCT
CCCTGCTAGGACTTTGCTTTTCCTGCTAACTCTACCGATACACGAGGCTCAGCCTGACGGGTAG
AGGCCTGTTCGCCAAGCAGCGCACCTTCTCACATCCTCCGCCTCTTTATGGTCTCTTCTGGATC
GGGAGTTAGCTGCTGTGGACACAAGCAGTTTAATTGGATCTTCCCAGGTGCTAGTTTTGTCTGA
GGTGCTGATGACCAACTTAAACCCTCAATCACACTAGGCACAGCACTCTGCCACTGAACTACAG
CTTTATAAATAAGAAATGGGGATCAGAAGTTCAAGGCTAGCCTGGGGTAAGAATTTGAACAAGA
ATAAGCATACTTTCCCCCACTGGTCCCATCTAGTGTTCCTCAGTGACGAAGGAGTGCTGAGCGG
AATCTACTTCCTGTGCTCCTCGCTTCCACGTGCATCTTAAAGGTGTATTTAAACTGTTCTCAAA
CACTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006246989 ⟹ XP_006247051

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,717,796 - 67,741,141 (+)	NCBI
Rnor_6.0	10	70,134,734 - 70,158,051 (+)	NCBI
Rnor_5.0	10	69,765,441 - 69,788,758 (+)	NCBI

Sequence:

show sequence

CCGTATTTAAAGAGACAGGAGGTCTAGTCATCGTGCAAGGCCCGTGGCCTTGTGGGCTCCTGGT
CCGGTGGCCGGTGCGGAGCGTCAGAGCCAGGGCAGCCGAGAAGGCAGCTATATGACTTTGGCCT
TTAAGACCCTCTTCCCGAGAAACCTCTGTGCCCTTGGCAGAAAAGAACTGTGCCTGTTTTCAGA
ACAGCATCACTGGCCTGCCATAAGACAGTTCAGCCAGTGGTCGGAAACAAATCTCCTTTGTGGG
TGCTGCCTCCTCCAGAGAAGAAAGCCTGTCCTATCTTTCCAGAGAGGTCATCTAAGACCACGTG
CCACCCACCTTATTTCGTGGTCAGGGTCGCATGTGGGACTCTGTACTGGCCCCTGTGAGATGGC
CGAACAGCGGTTCTGTGTGGACTATGCCAAGCGGGGCACAGCTGGCTGCAAGAAATGCAAGGAG
AAGATTGTAAAGGGCGTATGCCGCATTGGCAAAGTGGTACCCAATCCCTTCTCAGAGTCTGGGG
GTGATATGAAAGAGTGGTACCACATTAAGTGCATGTTTGAGAAACTGGAGCGGGCGCGGGCCAC
CACAAAAAAAATTGAAGACCTCACAGAGCTGGAAGGCTGGGAAGAGCTGGAAGATAATGAAAAG
GAACAGATAAGCCAGCACATTGCAGACCTGTCTTCCAAGACAGCTGCCACACCGAAGAAGAAAG
CTACTGTCCAGGCTAAGCTGACAACCACTGGCCAAGTGACATCACCAGTGAAAGGCGCTTCGTT
TATTACCAGTACCAATCCCCGGAAATTTTCTGGCTTTTCAGCAGCCAAACCGAACAACTCTGAG
CAAGACCCCTCAAGCCCTGCTCCTAAGACCAGTCTGTCCGCAAGTAAATGTGACCCTAAGCACA
AAGATTGTCTACTACGAGAATTCCGGAAGCTGTGTGCCATGGTAGCTGAAAATCCTAGCTATAA
CACCAAGACCCAGATCATCCACGACTTCTTGCAGAAAGGCTCCACAGGAGATGGCTTCCGAGGC
GATGTGTACCTGACAGTGAAGCTGCTGCTGCCTGGTGTCATCAAGAGTGTGTACAACTTGAATG
ATAAGCAGATAGTGAAACTGTTCAGCCGAATTTTTAACTGCAACCCAGATGATATGGCCCGGGA
CCTAGAACAGGGTGACGTGTCCGAGACGATCAGAGTCTTCTTTGAGCAGAGCAAGTCTTTTCCC
CCAGCTGCCAAAAGCCTCCTCACCATCCAGGAGGTGGATGCATTTCTTCTGCACCTCTCCAAGC
TCACCAAAGAGGATGAGCAGCAGCAGGCCCTGCAGGACATTGCTTCCAGGTGTACAGCCAATGA
CCTTAAGTGCATTATCCGGCTGATCAAACACGATCTGAAGATGAACTCGGGTGCAAAACACGTG
TTAGATGCCCTTGACCCCAATGCTTATGAAGCCTTCAAAGCATCACGCAACCTGCAGGATGTGG
TGGAGCGGGTCCTTCACAATGAGCAGGAGGTGGAGAAGGACCCAGGCCGGCGTCGGGCTCTGAG
TGTCCAGGCCTCATTGATGACACCTGTGCAACCCATGCTGGCTGAGGCCTGCAAGTCCATTGAG
TATGCAATGAAGAAGTGTCCCAATGGCATGTTCTCTGAGATCAAGTACGATGGTGAGCGAGTCC
AGGTGCATAAGAAGGGAGACCATTTCAGCTACTTCAGCCGCAGTCTCAAGCCTGTCTTGCCTCA
CAAGGTGGCCCACTTTAAGGACTATATTCCCAAAGCGTTTCCTGGGGGTCAAAGCATGATCTTG
GACTCTGAAGTGCTCCTGATTGATAACAACACAGGCAAACCACTGCCCTTTGGGACCCTGGGAG
TACACAAGAAAGCTGCTTTCCAGGATGCTAATGTCTGCCTGTTTGTTTTTGATTGTATCTACTT
TAATGATGTCAGCTTGATGGACAGGCCTCTCTGTGAGCGACGGAAGTTTCTTCATGATAACATG
GTTGAAATCCGTAACCGGATCATGTTCTCAGAAATGAAGCAAGTCACAAAAGCTTCAGACCTGG
CTGACATGATAAACCGGGTGATCCGAGAGGGCCTGGAAGGTTTGGTGCTAAAGGATGTGAAGGG
TACATATGAGCCTGGAAAACGACACTGGCTGAAAGTTAAGAAAGACTATTTGAACGAGGGGGCC
ATGGCTGATACAGCTGATCTGGTGGTTCTTGGGGCCTTCTATGGGCAAGGGAGCAAAGGTGGAA
TGATGTCCATCTTCCTCATGGGCTGCTATGACCCCGACAGCCAGAAGTGGTGCACTGTTACAAA
ATGTGCTGGAGGCCATGACGATGCCACACTTGCCCGCCTGCAGAAAGAGCTAGATATGGTGAAG
ATTAGCAAGGATCCTAGCAAGATACCCAGCTGGCTGAAGATCAACAAGATCTACTATCCTGACT
TTATCGTCCCAGACCCAAAGAAAGCTGCTGTGTGGGAGATCACAGGAGCAGAATTCTCTCGATC
TGAGGCGCATACTGCTGATGGGATCTCCATCCGATTTCCTCGATGCACCCGAATCCGGGATGAC
AAGGACTGGAAATCTGCCACTAACCTCCCCCAACTCAAGGAACTGTACCAGCTGTCCAAAGACA
AGGCAGACTTCGCTGTGGTGGCTGGAGATGAGGGGAGCTCCACTACTGGAGGCAGCAATGGTGA
GAATGAGGGCACTGCTGGGTCTACTGTGCCCCGCAAGGGCCCCAAGGGACCCCCCAGTAAGTCC
TCTGCCAGTGCCAAGAAGACTGAACAGAAGCTGAATGATCCCAGTAGCAGAGGTGGAGAGAAGC
TGGCTGTGAAGTCTTCTCCTGTCAAAGTGGGGATGAAGAGGAAAGCTGCTGATGAGACCCCAGG
CCTGACAAAGGCGCTGTTGGATGTCTTCACTGGGGTGAGGCTCTACTTGCCACCTTCTACACCA
GACTTCAGACGGCTCAAACGTTACTTTGTGGCATTCAACGGGGACCTGGTACAGGAATTTGACA
TGGCCTCAGCCACACATGTGCTGGGTAACAGGGACAAGAACACTGATGCCCAGTTGGTCTCTTC
AGAGTGGATTTGGGCATGCATCCGGAAACGGAGGCTGGTAGCTCCCTGCTAGGACTTTGCTTTT
CCTGCTAACTCTACCGATACACGAGGCTCAGCCTGACGGGTAGAGGCCTGTTCGCCAAGCAGCG
CACCTTCTCACATCCTCCGCCTCTTTATGGTCTCTTCTGGATCGGGAGTTAGCTGCTGTGGACA
CAAGCAGTTTAATTGGATCTTCCCAGGTGCTAGTTTTGTCTGAGGTGCTGATGACCAACTTAAA
CCCTCAATCACACTAGGCACAGCACTCTGCCACTGAACTACAGCTTTATAAATAAGAAATGGGG
ATCAGAAGTTCAAGGCTAGCCTGGGGTAAGAATTTGAACAAGAATAAGCATACTTTCCCCCACT
GGTCCCATCTAGTGTTCCTCAGTGACGAAGGAGTGCTGAGCGGAATCTACTTCCTGTGCTCCTC
GCTTCCACGTGCATCTTAAAGGTGTATTTAAACTGTTCTCAAACACTTCTTATACCTGGCAAAA
CCTTTATTATGTCTGGTCCAAACCCCCATGTGAAAGAACAAAGTGGTCTCCAAATTTCCAGGTC
ATTGCCTGGAGGGAGAGCTGACATCTACAGAAAAGTGTCCTCCTTGGAGACAGAGGCTCCTTGA
AGGTGAATTTGCCTCATCAAAATCTGACTGCTCTCAGCAGCACAGGTCCATAGCTGGGAAAATC
TACATACCCTGCCTACCAAGGTTGGCTTCTATGCCATGTGTGGCAGATGTCCTTGAAGGGGAAA
GAAAATGATTTCTGTGTATAACTGCACACAAGGGGTATTTTGCCACAGTGGAAGTGTCCTAAAC
TAGCCTTATCTGATTGTCAAGCCTTGAAATGGGATTAGTGTGACTGGCGAAAGCCATAAACATT
TCAAGACATCTTCAAATGGTCTCAAGTTACCGGTGACATCACATCATCTGAGTATCAGTTCCTC
AAGAGGAATGGGCAGTCACTGTTGCCAAATCACTGGGCAGCGGCCAGTAACCTCAGACACCTTG
TTGAAGGCATGCAACACGGAGCCTGGTAAAGATATTATCCAGGAGGAGGCCTAGCTTACACCTC
ACTTGTTAAAAGTTCACATTTGGGTCTAAGCATGGAACTGTAGTAGACCGCCTTCTTTGTCTAT
GTTGTGCCACCTCTTGAAGAGCAGCTCTGTTCTTATTAACTCAGCAGGCTTTTCTATCCACCTG
TGAGCTAGGTTAATATGATGGGACCTCTTAAACACTTATGTGAGCCTCTAAGATACAGACCTAC
CACCCCACGTAACTCCTAAAGTAACATCCCACTAGGAGGCTGCTTACTAGTCTGGCTGTCTTTC
TCCTATTTTATAGATGCTCTGACTAGGGTAGAGTAAGCGACATTCAGTCTGGTAAGTTAAACTT
TTTTTATTCTAGCCTCAAGGCGGAAGCTGCTTTGTGCTTTGAACACTTGGCTTCCTTGCCCAAG
CAGCTTGGTAGAGCATCAAAGATGACTTCCCCATCACACAGGGCTGGAAGTTTGTCCCTTTGTC
CCTTTAATGCCTTACTATATAGTCACTTCAGCTTGCTGTCTGTACATTTCCCTTTGCAGAGGTT
AGGCTGTATGTAGACCTTTGTATCTTTCCTGTCTTTCCACACAAGCCTAAGCATGACCTGAAAC
CCCCATCCCCCAAGGCTGGAAACATGCTCTCTGTGGCTTTTGTTTACACAATGCCAGTTGATGG
CAGGCAGTGCTCATTATGGGATGCTCAACAGATCCGGCCATCAATAAGAGACAGGGTAGAATCC
TTTCATCCAGCTCTCCCATAGGTGATACACTCCACTCCACTCCCCTTAGGCACCTGGTCAGGTA
GGTGGGTACAGGCCTGTGTCTACTCTGCAGTCTGCTCTTTAGGCTGGGCCAACCTTGGAGCCAC
ACTTGTCTGTATCCAAACGCTACTGTCAGTGTTTTGGGGTAACTTGAAAACTTAACTGCCTACC
TAGCTGTCTTGAGATTCCTTTCACTTAGCTCTTGAAGGCCCCTCTACAGTGGGACTGTAATAAC
TTCACACGGTGCTTGCCGTTTGCTCTTGAATCACCCTTACACTTAGCTCCACGAGTAACTGTTC
CACAATCCCATGTACTCTTGTGGATCTTGGCCAGGTCACAACACAGAGCATGTGGCCTGATGTC
TGCCCACGTTTACAAGTGTTTTGGGAACCTCTGGTATCATCCCCCCACACCAGATGGAACAGGC
ATCTGTATTTAAACTTTATTACAAAATTATAAAGCAGAGCTCTGTAACAAAAAATACACATTTG
GGTATGCTTACCACCCAGGTGAGAGAATCAATGTAAGCCACTTGGAGCTATACATTTATATCCA
AGAGATCTCAAATGTGTACAACATAGACTATTAATTCCTTTACAGCTTGTTAGTTTAGAACCGG
CTATTCCAACCAGTCAGCATCTTTGAAAACTAAGTCTCAACTAAAATCTTGGCGCAATCGGCAA
AGTCCACAGAATAATTGGAAGGATTAGGTGTTTCCACATTAATTAAGACCAAGGATCCGTGAAG
AACAGAAAAAGGGGCTCAGGTATTTAAAAAAAAAAATCAGTTTTTCTACCTGAGATATTAACTG
GAATGAGTTCCAACTTCCATTTGGTTTAACAATAAAAAGGTTATTTGA

hide sequence

RefSeq Acc Id:

XM_006246990 ⟹ XP_006247052

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,717,796 - 67,741,141 (+)	NCBI
Rnor_6.0	10	70,134,745 - 70,158,051 (+)	NCBI
Rnor_5.0	10	69,765,441 - 69,788,758 (+)	NCBI

Sequence:

show sequence

GAGACAGGAGGTCTAGTCATCGTGCAAGGCCCGTGGCCTTGTGGGCTCCTGGTCCGGTGGCCGG
TGCGGAGCGTCAGAGCCAGGGCAGCCGAGAAGCTATATGACTTTGGCCTTTAAGACCCTCTTCC
CGAGAAACCTCTGTGCCCTTGGCAGAAAAGAACTGTGCCTGTTTTCAGAACAGCATCACTGGCC
TGCCATAAGACAGTTCAGCCAGTGGTCGGAAACAAATCTCCTTTGTGGGTGCTGCCTCCTCCAG
AGAAGAAAGCCTGTCCTATCTTTCCAGAGAGGTCATCTAAGACCACGTGCCACCCACCTTATTT
CGTGGTCAGGGTCGCATGTGGGACTCTGTACTGGCCCCTGTGAGATGGCCGAACAGCGGTTCTG
TGTGGACTATGCCAAGCGGGGCACAGCTGGCTGCAAGAAATGCAAGGAGAAGATTGTAAAGGGC
GTATGCCGCATTGGCAAAGTGGTACCCAATCCCTTCTCAGAGTCTGGGGGTGATATGAAAGAGT
GGTACCACATTAAGTGCATGTTTGAGAAACTGGAGCGGGCGCGGGCCACCACAAAAAAAATTGA
AGACCTCACAGAGCTGGAAGGCTGGGAAGAGCTGGAAGATAATGAAAAGGAACAGATAAGCCAG
CACATTGCAGACCTGTCTTCCAAGACAGCTGCCACACCGAAGAAGAAAGCTACTGTCCAGGCTA
AGCTGACAACCACTGGCCAAGTGACATCACCAGTGAAAGGCGCTTCGTTTATTACCAGTACCAA
TCCCCGGAAATTTTCTGGCTTTTCAGCAGCCAAACCGAACAACTCTGAGCAAGACCCCTCAAGC
CCTGCTCCTAAGACCAGTCTGTCCGCAAGTAAATGTGACCCTAAGCACAAAGATTGTCTACTAC
GAGAATTCCGGAAGCTGTGTGCCATGGTAGCTGAAAATCCTAGCTATAACACCAAGACCCAGAT
CATCCACGACTTCTTGCAGAAAGGCTCCACAGGAGATGGCTTCCGAGGCGATGTGTACCTGACA
GTGAAGCTGCTGCTGCCTGGTGTCATCAAGAGTGTGTACAACTTGAATGATAAGCAGATAGTGA
AACTGTTCAGCCGAATTTTTAACTGCAACCCAGATGATATGGCCCGGGACCTAGAACAGGGTGA
CGTGTCCGAGACGATCAGAGTCTTCTTTGAGCAGAGCAAGTCTTTTCCCCCAGCTGCCAAAAGC
CTCCTCACCATCCAGGAGGTGGATGCATTTCTTCTGCACCTCTCCAAGCTCACCAAAGAGGATG
AGCAGCAGCAGGCCCTGCAGGACATTGCTTCCAGGTGTACAGCCAATGACCTTAAGTGCATTAT
CCGGCTGATCAAACACGATCTGAAGATGAACTCGGGTGCAAAACACGTGTTAGATGCCCTTGAC
CCCAATGCTTATGAAGCCTTCAAAGCATCACGCAACCTGCAGGATGTGGTGGAGCGGGTCCTTC
ACAATGAGCAGGAGGTGGAGAAGGACCCAGGCCGGCGTCGGGCTCTGAGTGTCCAGGCCTCATT
GATGACACCTGTGCAACCCATGCTGGCTGAGGCCTGCAAGTCCATTGAGTATGCAATGAAGAAG
TGTCCCAATGGCATGTTCTCTGAGATCAAGTACGATGGTGAGCGAGTCCAGGTGCATAAGAAGG
GAGACCATTTCAGCTACTTCAGCCGCAGTCTCAAGCCTGTCTTGCCTCACAAGGTGGCCCACTT
TAAGGACTATATTCCCAAAGCGTTTCCTGGGGGTCAAAGCATGATCTTGGACTCTGAAGTGCTC
CTGATTGATAACAACACAGGCAAACCACTGCCCTTTGGGACCCTGGGAGTACACAAGAAAGCTG
CTTTCCAGGATGCTAATGTCTGCCTGTTTGTTTTTGATTGTATCTACTTTAATGATGTCAGCTT
GATGGACAGGCCTCTCTGTGAGCGACGGAAGTTTCTTCATGATAACATGGTTGAAATCCGTAAC
CGGATCATGTTCTCAGAAATGAAGCAAGTCACAAAAGCTTCAGACCTGGCTGACATGATAAACC
GGGTGATCCGAGAGGGCCTGGAAGGTTTGGTGCTAAAGGATGTGAAGGGTACATATGAGCCTGG
AAAACGACACTGGCTGAAAGTTAAGAAAGACTATTTGAACGAGGGGGCCATGGCTGATACAGCT
GATCTGGTGGTTCTTGGGGCCTTCTATGGGCAAGGGAGCAAAGGTGGAATGATGTCCATCTTCC
TCATGGGCTGCTATGACCCCGACAGCCAGAAGTGGTGCACTGTTACAAAATGTGCTGGAGGCCA
TGACGATGCCACACTTGCCCGCCTGCAGAAAGAGCTAGATATGGTGAAGATTAGCAAGGATCCT
AGCAAGATACCCAGCTGGCTGAAGATCAACAAGATCTACTATCCTGACTTTATCGTCCCAGACC
CAAAGAAAGCTGCTGTGTGGGAGATCACAGGAGCAGAATTCTCTCGATCTGAGGCGCATACTGC
TGATGGGATCTCCATCCGATTTCCTCGATGCACCCGAATCCGGGATGACAAGGACTGGAAATCT
GCCACTAACCTCCCCCAACTCAAGGAACTGTACCAGCTGTCCAAAGACAAGGCAGACTTCGCTG
TGGTGGCTGGAGATGAGGGGAGCTCCACTACTGGAGGCAGCAATGGTGAGAATGAGGGCACTGC
TGGGTCTACTGTGCCCCGCAAGGGCCCCAAGGGACCCCCCAGTAAGTCCTCTGCCAGTGCCAAG
AAGACTGAACAGAAGCTGAATGATCCCAGTAGCAGAGGTGGAGAGAAGCTGGCTGTGAAGTCTT
CTCCTGTCAAAGTGGGGATGAAGAGGAAAGCTGCTGATGAGACCCCAGGCCTGACAAAGGCGCT
GTTGGATGTCTTCACTGGGGTGAGGCTCTACTTGCCACCTTCTACACCAGACTTCAGACGGCTC
AAACGTTACTTTGTGGCATTCAACGGGGACCTGGTACAGGAATTTGACATGGCCTCAGCCACAC
ATGTGCTGGGTAACAGGGACAAGAACACTGATGCCCAGTTGGTCTCTTCAGAGTGGATTTGGGC
ATGCATCCGGAAACGGAGGCTGGTAGCTCCCTGCTAGGACTTTGCTTTTCCTGCTAACTCTACC
GATACACGAGGCTCAGCCTGACGGGTAGAGGCCTGTTCGCCAAGCAGCGCACCTTCTCACATCC
TCCGCCTCTTTATGGTCTCTTCTGGATCGGGAGTTAGCTGCTGTGGACACAAGCAGTTTAATTG
GATCTTCCCAGGTGCTAGTTTTGTCTGAGGTGCTGATGACCAACTTAAACCCTCAATCACACTA
GGCACAGCACTCTGCCACTGAACTACAGCTTTATAAATAAGAAATGGGGATCAGAAGTTCAAGG
CTAGCCTGGGGTAAGAATTTGAACAAGAATAAGCATACTTTCCCCCACTGGTCCCATCTAGTGT
TCCTCAGTGACGAAGGAGTGCTGAGCGGAATCTACTTCCTGTGCTCCTCGCTTCCACGTGCATC
TTAAAGGTGTATTTAAACTGTTCTCAAACACTTCTTATACCTGGCAAAACCTTTATTATGTCTG
GTCCAAACCCCCATGTGAAAGAACAAAGTGGTCTCCAAATTTCCAGGTCATTGCCTGGAGGGAG
AGCTGACATCTACAGAAAAGTGTCCTCCTTGGAGACAGAGGCTCCTTGAAGGTGAATTTGCCTC
ATCAAAATCTGACTGCTCTCAGCAGCACAGGTCCATAGCTGGGAAAATCTACATACCCTGCCTA
CCAAGGTTGGCTTCTATGCCATGTGTGGCAGATGTCCTTGAAGGGGAAAGAAAATGATTTCTGT
GTATAACTGCACACAAGGGGTATTTTGCCACAGTGGAAGTGTCCTAAACTAGCCTTATCTGATT
GTCAAGCCTTGAAATGGGATTAGTGTGACTGGCGAAAGCCATAAACATTTCAAGACATCTTCAA
ATGGTCTCAAGTTACCGGTGACATCACATCATCTGAGTATCAGTTCCTCAAGAGGAATGGGCAG
TCACTGTTGCCAAATCACTGGGCAGCGGCCAGTAACCTCAGACACCTTGTTGAAGGCATGCAAC
ACGGAGCCTGGTAAAGATATTATCCAGGAGGAGGCCTAGCTTACACCTCACTTGTTAAAAGTTC
ACATTTGGGTCTAAGCATGGAACTGTAGTAGACCGCCTTCTTTGTCTATGTTGTGCCACCTCTT
GAAGAGCAGCTCTGTTCTTATTAACTCAGCAGGCTTTTCTATCCACCTGTGAGCTAGGTTAATA
TGATGGGACCTCTTAAACACTTATGTGAGCCTCTAAGATACAGACCTACCACCCCACGTAACTC
CTAAAGTAACATCCCACTAGGAGGCTGCTTACTAGTCTGGCTGTCTTTCTCCTATTTTATAGAT
GCTCTGACTAGGGTAGAGTAAGCGACATTCAGTCTGGTAAGTTAAACTTTTTTTATTCTAGCCT
CAAGGCGGAAGCTGCTTTGTGCTTTGAACACTTGGCTTCCTTGCCCAAGCAGCTTGGTAGAGCA
TCAAAGATGACTTCCCCATCACACAGGGCTGGAAGTTTGTCCCTTTGTCCCTTTAATGCCTTAC
TATATAGTCACTTCAGCTTGCTGTCTGTACATTTCCCTTTGCAGAGGTTAGGCTGTATGTAGAC
CTTTGTATCTTTCCTGTCTTTCCACACAAGCCTAAGCATGACCTGAAACCCCCATCCCCCAAGG
CTGGAAACATGCTCTCTGTGGCTTTTGTTTACACAATGCCAGTTGATGGCAGGCAGTGCTCATT
ATGGGATGCTCAACAGATCCGGCCATCAATAAGAGACAGGGTAGAATCCTTTCATCCAGCTCTC
CCATAGGTGATACACTCCACTCCACTCCCCTTAGGCACCTGGTCAGGTAGGTGGGTACAGGCCT
GTGTCTACTCTGCAGTCTGCTCTTTAGGCTGGGCCAACCTTGGAGCCACACTTGTCTGTATCCA
AACGCTACTGTCAGTGTTTTGGGGTAACTTGAAAACTTAACTGCCTACCTAGCTGTCTTGAGAT
TCCTTTCACTTAGCTCTTGAAGGCCCCTCTACAGTGGGACTGTAATAACTTCACACGGTGCTTG
CCGTTTGCTCTTGAATCACCCTTACACTTAGCTCCACGAGTAACTGTTCCACAATCCCATGTAC
TCTTGTGGATCTTGGCCAGGTCACAACACAGAGCATGTGGCCTGATGTCTGCCCACGTTTACAA
GTGTTTTGGGAACCTCTGGTATCATCCCCCCACACCAGATGGAACAGGCATCTGTATTTAAACT
TTATTACAAAATTATAAAGCAGAGCTCTGTAACAAAAAATACACATTTGGGTATGCTTACCACC
CAGGTGAGAGAATCAATGTAAGCCACTTGGAGCTATACATTTATATCCAAGAGATCTCAAATGT
GTACAACATAGACTATTAATTCCTTTACAGCTTGTTAGTTTAGAACCGGCTATTCCAACCAGTC
AGCATCTTTGAAAACTAAGTCTCAACTAAAATCTTGGCGCAATCGGCAAAGTCCACAGAATAAT
TGGAAGGATTAGGTGTTTCCACATTAATTAAGACCAAGGATCCGTGAAGAACAGAAAAAGGGGC
TCAGGTATTTAAAAAAAAAAATCAGTTTTTCTACCTGAGATATTAACTGGAATGAGTTCCAACT
TCCATTTGGTTTAACAATAAAAAGGTTATTTGA

hide sequence

RefSeq Acc Id:

XM_008768020 ⟹ XP_008766242

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,719,943 - 67,741,141 (+)	NCBI
Rnor_6.0	10	70,134,922 - 70,158,051 (+)	NCBI

Sequence:

show sequence

TGGCTCCTCCCCCGCCCGCCGCTCAGCCTGGGGGCACACCCTCCGTGACGTGGCGGCCCCCCGG
GAGCCCACGGGAGGCCCGCGGCCCCCGGGACCCCAGGCGGGCACCCGGAAGGGCAGGATGCTGC
TGGCGGCAGAGTGGGCATCCTCAGGGGTCGAGGCCGGGCCGCTGCTGGTCCTCCCCGCCGCCTT
GTGGCGCGGCGGGCTCAACCCGTGGGCAGAGCGGCGTGCTGCTTGCTCTTCGGGGGGGGGGGGG
GGCTCCAGAGCCTCTCCGCGCTGGTCTCCCCCTGTAGTTAGTTGTCGTATCCCGGGCTGGACGA
CACGGCACCCCACCCACCCTAATCTGCGGAAAGTTGAACTCCTATCCGCCCGGAGCACCTCCCC
AGCCCTGCCGGCCTTCACTCGCCTCTGTGATTCTTAACCGTTAGGGCTTATGTGACCCACTGAG
TCTGCCAGTTACGGACTTCTCCTCCCCCAAATCGAATATTTTCAAAGTTTGGTATATATCCTCC
GGGAGTTCCGAACTCCACCTCTGGCCTGCCCTCGTATGCGTTGTACTTTTCCTAACCAATTCAT
GAAGTAGTTCTAATCTTTGGGGGGTGGGGGAGGAGTTGTTATCCTTTTGAGACGATCTTGGCTA
TGTATCCCTAGATAGACAGAAATTTACTAAGTAAACCAGACTGTCCAACTTCGAACGCACAGCA
ATGCCTTCTGAGGGATGAGATTACAGGAGAGAGCCACCATAACTAGCTTAGTCCTGTTTTTTAA
ACTAAAACTGGGGCCGGGTATAGTAGCACATGCCTTTAATCCGTGCACTCAGAACAGTAGTTTG
CTCTGCATCGTGACTCCCAGGACAGCCAGGGCTACATAGAAAGATCCTGTCTCAAAAGGCGAAA
AATAAACAGACAATAAACTGGTCATGCTTGGTGGCTCACACCTACCATCCCAGCACTGGAGGTG
GGAGGATCAGCTAGCTAGGGTCAACCTTGTTGGAGGAAACCGAGTCACCTGGTATCTGCCCCAC
TTTCCTGCCCCCTTTTAGCTGGATAGACTTGGCTTCCCAACCCCTTCTTAAATAGTATACCTGC
TGTGTTCTGCACCATGTCGCACAGCAGTGATGGAAGCCAGCTTGCTGTTCTGACACAATATTCA
TTTTACTTCTCAGCAGAGTGGGGACTAAAAATAGTTTCCAGTAAATTGGAAATTAAAACTGTAA
AGCCACTTAAATAATTATAAATATAAGAGTAAGAATAATAATTTTCCACTTGAATTGATTCATC
ACTTGGTTAGATCTTACAGTCCGGTTATTTCAACCTCCCTGATTCAGGTAGCCGAATTAAGCAA
GGGGATTGCTTATTCTGTTTCTAAGGACTTTCCTCTTAGCACAACTGACTACTCCTTGAATTAG
GTCCTACTGTGAGCTGCAGTTGACAGATGAAATAGGAACAGAGAGGTAAAGTAACTGAACCAAG
GTCACACAGCTGATAAATGGCTAAGGTTTTGAACTCAGGCAGTCAATCTGATTATAGACTCTGA
TTAGTTGCCTCGAAAAGGGGGCCTTCTTCTGAAATCCCAAAACTGTTACAGTGGCTGATTTGTT
TTCTGAAAGTGGCTCATGTGTTATGTTTCACAGGAAAATTTCATAAACATAATGTAATTTTTCT
TGGTTTTTAAGACAGCTTCAGGATCCTGGTAATATTTAAAGGTCACCATCGATTATGAGTGCCT
TTACAGTCTCTACAATGTTGACGAGGCATGCCCCTTTGGAAACTGGTTTTTCCTGTATTGGAAC
TCTGGGTGGTAAATATTTAATGCATTGGGAAGTGCTTGGTTAATCAAGTGCTCTGTCTGAGATT
CTAGCTGTTAAGAAGTTGGAAGCCTGGATCCCTCATGTCTGTCTGTCTGTCTGTCTGTTTCCAC
CCTTTTATGCAGCTATATGACTTTGGCCTTTAAGACCCTCTTCCCGAGAAACCTCTGTGCCCTT
GGCAGAAAAGAACTGTGCCTGTTTTCAGAACAGCATCACTGGCCTGCCATAAGACAGTTCAGCC
AGTGGTCGGAAACAAATCTCCTTTGTGGGTGCTGCCTCCTCCAGAGAAGAAAGCCTGTCCTATC
TTTCCAGAGAGGTCATCTAAGACCACGTGCCACCCACCTTATTTCGTGGTCAGGGTCGCATGTG
GGACTCTGTACTGGCCCCTGTGAGATGGCCGAACAGCGGTTCTGTGTGGACTATGCCAAGCGGG
GCACAGCTGGCTGCAAGAAATGCAAGGAGAAGATTGTAAAGGGCGTATGCCGCATTGGCAAAGT
GGTACCCAATCCCTTCTCAGAGTCTGGGGGTGATATGAAAGAGTGGTACCACATTAAGTGCATG
TTTGAGAAACTGGAGCGGGCGCGGGCCACCACAAAAAAAATTGAAGACCTCACAGAGCTGGAAG
GCTGGGAAGAGCTGGAAGATAATGAAAAGGAACAGATAAGCCAGCACATTGCAGACCTGTCTTC
CAAGACAGCTGCCACACCGAAGAAGAAAGCTACTGTCCAGGCTAAGCTGACAACCACTGGCCAA
GTGACATCACCAGTGAAAGGCGCTTCGTTTATTACCAGTACCAATCCCCGGAAATTTTCTGGCT
TTTCAGCCAAACCGAACAACTCTGAGCAAGACCCCTCAAGCCCTGCTCCTAAGACCAGTCTGTC
CGCAAGTAAATGTGACCCTAAGCACAAAGATTGTCTACTACGAGAATTCCGGAAGCTGTGTGCC
ATGGTAGCTGAAAATCCTAGCTATAACACCAAGACCCAGATCATCCACGACTTCTTGCAGAAAG
GCTCCACAGGAGATGGCTTCCGAGGCGATGTGTACCTGACAGTGAAGCTGCTGCTGCCTGGTGT
CATCAAGAGTGTGTACAACTTGAATGATAAGCAGATAGTGAAACTGTTCAGCCGAATTTTTAAC
TGCAACCCAGATGATATGGCCCGGGACCTAGAACAGGGTGACGTGTCCGAGACGATCAGAGTCT
TCTTTGAGCAGAGCAAGTCTTTTCCCCCAGCTGCCAAAAGCCTCCTCACCATCCAGGAGGTGGA
TGCATTTCTTCTGCACCTCTCCAAGCTCACCAAAGAGGATGAGCAGCAGCAGGCCCTGCAGGAC
ATTGCTTCCAGGTGTACAGCCAATGACCTTAAGTGCATTATCCGGCTGATCAAACACGATCTGA
AGATGAACTCGGGTGCAAAACACGTGTTAGATGCCCTTGACCCCAATGCTTATGAAGCCTTCAA
AGCATCACGCAACCTGCAGGATGTGGTGGAGCGGGTCCTTCACAATGAGCAGGAGGTGGAGAAG
GACCCAGGCCGGCGTCGGGCTCTGAGTGTCCAGGCCTCATTGATGACACCTGTGCAACCCATGC
TGGCTGAGGCCTGCAAGTCCATTGAGTATGCAATGAAGAAGTGTCCCAATGGCATGTTCTCTGA
GATCAAGTACGATGGTGAGCGAGTCCAGGTGCATAAGAAGGGAGACCATTTCAGCTACTTCAGC
CGCAGTCTCAAGCCTGTCTTGCCTCACAAGGTGGCCCACTTTAAGGACTATATTCCCAAAGCGT
TTCCTGGGGGTCAAAGCATGATCTTGGACTCTGAAGTGCTCCTGATTGATAACAACACAGGCAA
ACCACTGCCCTTTGGGACCCTGGGAGTACACAAGAAAGCTGCTTTCCAGGATGCTAATGTCTGC
CTGTTTGTTTTTGATTGTATCTACTTTAATGATGTCAGCTTGATGGACAGGCCTCTCTGTGAGC
GACGGAAGTTTCTTCATGATAACATGGTTGAAATCCGTAACCGGATCATGTTCTCAGAAATGAA
GCAAGTCACAAAAGCTTCAGACCTGGCTGACATGATAAACCGGGTGATCCGAGAGGGCCTGGAA
GGTTTGGTGCTAAAGGATGTGAAGGGTACATATGAGCCTGGAAAACGACACTGGCTGAAAGTTA
AGAAAGACTATTTGAACGAGGGGGCCATGGCTGATACAGCTGATCTGGTGGTTCTTGGGGCCTT
CTATGGGCAAGGGAGCAAAGGTGGAATGATGTCCATCTTCCTCATGGGCTGCTATGACCCCGAC
AGCCAGAAGTGGTGCACTGTTACAAAATGTGCTGGAGGCCATGACGATGCCACACTTGCCCGCC
TGCAGAAAGAGCTAGATATGGTGAAGATTAGCAAGGATCCTAGCAAGATACCCAGCTGGCTGAA
GATCAACAAGATCTACTATCCTGACTTTATCGTCCCAGACCCAAAGAAAGCTGCTGTGTGGGAG
ATCACAGGAGCAGAATTCTCTCGATCTGAGGCGCATACTGCTGATGGGATCTCCATCCGATTTC
CTCGATGCACCCGAATCCGGGATGACAAGGACTGGAAATCTGCCACTAACCTCCCCCAACTCAA
GGAACTGTACCAGCTGTCCAAAGACAAGGCAGACTTCGCTGTGGTGGCTGGAGATGAGGGGAGC
TCCACTACTGGAGGCAGCAATGGTGAGAATGAGGGCACTGCTGGGTCTACTGTGCCCCGCAAGG
GCCCCAAGGGACCCCCCAGTAAGTCCTCTGCCAGTGCCAAGAAGACTGAACAGAAGCTGAATGA
TCCCAGTAGCAGAGGTGGAGAGAAGCTGGCTGTGAAGTCTTCTCCTGTCAAAGTGGGGATGAAG
AGGAAAGCTGCTGATGAGACCCCAGGCCTGACAAAGGCGCTGTTGGATGTCTTCACTGGGGTGA
GGCTCTACTTGCCACCTTCTACACCAGACTTCAGACGGCTCAAACGTTACTTTGTGGCATTCAA
CGGGGACCTGGTACAGGAATTTGACATGGCCTCAGCCACACATGTGCTGGGTAACAGGGACAAG
AACACTGATGCCCAGTTGGTCTCTTCAGAGTGGATTTGGGCATGCATCCGGAAACGGAGGCTGG
TAGCTCCCTGCTAGGACTTTGCTTTTCCTGCTAACTCTACCGATACACGAGGCTCAGCCTGACG
GGTAGAGGCCTGTTCGCCAAGCAGCGCACCTTCTCACATCCTCCGCCTCTTTATGGTCTCTTCT
GGATCGGGAGTTAGCTGCTGTGGACACAAGCAGTTTAATTGGATCTTCCCAGGTGCTAGTTTTG
TCTGAGGTGCTGATGACCAACTTAAACCCTCAATCACACTAGGCACAGCACTCTGCCACTGAAC
TACAGCTTTATAAATAAGAAATGGGGATCAGAAGTTCAAGGCTAGCCTGGGGTAAGAATTTGAA
CAAGAATAAGCATACTTTCCCCCACTGGTCCCATCTAGTGTTCCTCAGTGACGAAGGAGTGCTG
AGCGGAATCTACTTCCTGTGCTCCTCGCTTCCACGTGCATCTTAAAGGTGTATTTAAACTGTTC
TCAAACACTTCTTATACCTGGCAAAACCTTTATTATGTCTGGTCCAAACCCCCATGTGAAAGAA
CAAAGTGGTCTCCAAATTTCCAGGTCATTGCCTGGAGGGAGAGCTGACATCTACAGAAAAGTGT
CCTCCTTGGAGACAGAGGCTCCTTGAAGGTGAATTTGCCTCATCAAAATCTGACTGCTCTCAGC
AGCACAGGTCCATAGCTGGGAAAATCTACATACCCTGCCTACCAAGGTTGGCTTCTATGCCATG
TGTGGCAGATGTCCTTGAAGGGGAAAGAAAATGATTTCTGTGTATAACTGCACACAAGGGGTAT
TTTGCCACAGTGGAAGTGTCCTAAACTAGCCTTATCTGATTGTCAAGCCTTGAAATGGGATTAG
TGTGACTGGCGAAAGCCATAAACATTTCAAGACATCTTCAAATGGTCTCAAGTTACCGGTGACA
TCACATCATCTGAGTATCAGTTCCTCAAGAGGAATGGGCAGTCACTGTTGCCAAATCACTGGGC
AGCGGCCAGTAACCTCAGACACCTTGTTGAAGGCATGCAACACGGAGCCTGGTAAAGATATTAT
CCAGGAGGAGGCCTAGCTTACACCTCACTTGTTAAAAGTTCACATTTGGGTCTAAGCATGGAAC
TGTAGTAGACCGCCTTCTTTGTCTATGTTGTGCCACCTCTTGAAGAGCAGCTCTGTTCTTATTA
ACTCAGCAGGCTTTTCTATCCACCTGTGAGCTAGGTTAATATGATGGGACCTCTTAAACACTTA
TGTGAGCCTCTAAGATACAGACCTACCACCCCACGTAACTCCTAAAGTAACATCCCACTAGGAG
GCTGCTTACTAGTCTGGCTGTCTTTCTCCTATTTTATAGATGCTCTGACTAGGGTAGAGTAAGC
GACATTCAGTCTGGTAAGTTAAACTTTTTTTATTCTAGCCTCAAGGCGGAAGCTGCTTTGTGCT
TTGAACACTTGGCTTCCTTGCCCAAGCAGCTTGGTAGAGCATCAAAGATGACTTCCCCATCACA
CAGGGCTGGAAGTTTGTCCCTTTGTCCCTTTAATGCCTTACTATATAGTCACTTCAGCTTGCTG
TCTGTACATTTCCCTTTGCAGAGGTTAGGCTGTATGTAGACCTTTGTATCTTTCCTGTCTTTCC
ACACAAGCCTAAGCATGACCTGAAACCCCCATCCCCCAAGGCTGGAAACATGCTCTCTGTGGCT
TTTGTTTACACAATGCCAGTTGATGGCAGGCAGTGCTCATTATGGGATGCTCAACAGATCCGGC
CATCAATAAGAGACAGGGTAGAATCCTTTCATCCAGCTCTCCCATAGGTGATACACTCCACTCC
ACTCCCCTTAGGCACCTGGTCAGGTAGGTGGGTACAGGCCTGTGTCTACTCTGCAGTCTGCTCT
TTAGGCTGGGCCAACCTTGGAGCCACACTTGTCTGTATCCAAACGCTACTGTCAGTGTTTTGGG
GTAACTTGAAAACTTAACTGCCTACCTAGCTGTCTTGAGATTCCTTTCACTTAGCTCTTGAAGG
CCCCTCTACAGTGGGACTGTAATAACTTCACACGGTGCTTGCCGTTTGCTCTTGAATCACCCTT
ACACTTAGCTCCACGAGTAACTGTTCCACAATCCCATGTACTCTTGTGGATCTTGGCCAGGTCA
CAACACAGAGCATGTGGCCTGATGTCTGCCCACGTTTACAAGTGTTTTGGGAACCTCTGGTATC
ATCCCCCCACACCAGATGGAACAGGCATCTGTATTTAAACTTTATTACAAAATTATAAAGCAGA
GCTCTGTAACAAAAAATACACATTTGGGTATGCTTACCACCCAGGTGAGAGAATCAATGTAAGC
CACTTGGAGCTATACATTTATATCCAAGAGATCTCAAATGTGTACAACATAGACTATTAATTCC
TTTACAGCTTGTTAGTTTAGAACCGGCTATTCCAACCAGTCAGCATCTTTGAAAACTAAGTCTC
AACTAAAATCTTGGCGCAATCGGCAAAGTCCACAGAATAATTGGAAGGATTAGGTGTTTCCACA
TTAATTAAGACCAAGGATCCGTGAAGAACAGAAAAAGGGGCTCAGGTATTTAAAAAAAAAAATC
AGTTTTTCTACCTGAGATATTAACTGGAATGAGTTCCAACTTCCATTTGGTTTAACAATAAAAA
GGTTATTTGA

hide sequence

RefSeq Acc Id:

XM_008768021 ⟹ XP_008766243

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,719,943 - 67,741,141 (+)	NCBI
Rnor_6.0	10	70,134,925 - 70,158,051 (+)	NCBI

Sequence:

show sequence

CTCCTCCCCCGCCCGCCGCTCAGCCTGGGGGCACACCCTCCGTGACGTGGCGGCCCCCCGGGAG
CCCACGGGAGGCCCGCGGCCCCCGGGACCCCAGGCGGGCACCCGGAAGGGCAGGATGCTGCTGG
CGGCAGAGTGGGCATCCTCAGGGGTCGAGGCCGGGCCGCTGCTGGTCCTCCCCGCCGCCTTGTG
GCGCGGCGGGCTCAACCCGTGGGCAGAGCGGCGTGCTGCTTGCTCTTCGGGGGGGGGGGGGGGC
TCCAGAGCCTCTCCGCGCTGGTCTCCCCCTGTAGTTAGTTGTCGTATCCCGGGCTGGACGACAC
GGCACCCCACCCACCCTAATCTGCGGAAAGTTGAACTCCTATCCGCCCGGAGCACCTCCCCAGC
CCTGCCGGCCTTCACTCGCCTCTGTGATTCTTAACCGTTAGGGCTTATGTGACCCACTGAGTCT
GCCAGTTACGGACTTCTCCTCCCCCAAATCGAATATTTTCAAAGTTTGGTATATATCCTCCGGG
AGTTCCGAACTCCACCTCTGGCCTGCCCTCGTATGCGTTGTACTTTTCCTAACCAATTCATGAA
GTAGTTCTAATCTTTGGGGGGTGGGGGAGGAGTTGTTATCCTTTTGAGACGATCTTGGCTATGT
ATCCCTAGATAGACAGAAATTTACTAAGTAAACCAGACTGTCCAACTTCGAACGCACAGCAATG
CCTTCTGAGGGATGAGATTACAGGAGAGAGCCACCATAACTAGCTTAGTCCTGTTTTTTAAACT
AAAACTGGGGCCGGGTATAGTAGCACATGCCTTTAATCCGTGCACTCAGAACAGTAGTTTGCTC
TGCATCGTGACTCCCAGGACAGCCAGGGCTACATAGAAAGATCCTGTCTCAAAAGGCGAAAAAT
AAACAGACAATAAACTGGTCATGCTTGGTGGCTCACACCTACCATCCCAGCACTGGAGGTGGGA
GGATCAGCTAGCTAGGGTCAACCTTGTTGGAGGAAACCGAGTCACCTGGTATCTGCCCCACTTT
CCTGCCCCCTTTTAGCTGGATAGACTTGGCTTCCCAACCCCTTCTTAAATAGTATACCTGCTGT
GTTCTGCACCATGTCGCACAGCAGTGATGGAAGCCAGCTTGCTGTTCTGACACAATATTCATTT
TACTTCTCAGCAGAGTGGGGACTAAAAATAGTTTCCAGTAAATTGGAAATTAAAACTGTAAAGC
CACTTAAATAATTATAAATATAAGAGTAAGAATAATAATTTTCCACTTGAATTGATTCATCACT
TGGTTAGATCTTACAGTCCGGTTATTTCAACCTCCCTGATTCAGGTAGCCGAATTAAGCAAGGG
GATTGCTTATTCTGTTTCTAAGGACTTTCCTCTTAGCACAACTGACTACTCCTTGAATTAGGTC
CTACTGTGAGCTGCAGTTGACAGATGAAATAGGAACAGAGAGGTAAAGTAACTGAACCAAGGTC
ACACAGCTGATAAATGGCTAAGGTTTTGAACTCAGGCAGTCAATCTGATTATAGACTCTGATTA
GTTGCCTCGAAAAGGGGGCCTTCTTCTGAAATCCCAAAACTGTTACAGTGGCTGATTTGTTTTC
TGAAAGTGGCTCATGTGTTATGTTTCACAGGAAAATTTCATAAACATAATGTAATTTTTCTTGG
TTTTTAAGACAGCTTCAGGATCCTGGTAATATTTAAAGGTCACCATCGATTATGAGTGCCTTTA
CAGTCTCTACAATGTTGACGAGGCATGCCCCTTTGGAAACTGGTTTTTCCTGTATTGGAACTCT
GGGTGGTAAATATTTAATGCATTGGGAAGTGCTTGGTTAATCAAGTGCTCTGTCTGAGATTCTA
GCTGTTAAGAAGTTGGAAGCCTGGATCCCTCATGTCTGTCTGTCTGTCTGTCTGTTTCCACCCT
TTTATGCAGCTATATGACTTTGGCCTTTAAGACCCTCTTCCCGAGAAACCTCTGTGCCCTTGGC
AGAAAAGAACTGTGCCTGTTTTCAGAACAGCATCACTGGCCTGCCATAAGACAGTTCAGCCAGT
GGTCGGAAACAAATCTCCTTTGTGGGTGCTGCCTCCTCCAGAGAAGAAAGCCTGTCCTATCTTT
CCAGAGAGGTCATCTAAGACCACGTGCCACCCACCTTATTTCGTGGTCAGGGTCGCATGTGGGA
CTCTGTACTGGCCCCTGTGAGATGGCCGAACAGCGGTTCTGTGTGGACTATGCCAAGCGGGGCA
CAGCTGGCTGCAAGAAATGCAAGGAGAAGATTGTAAAGGGCGTATGCCGCATTGGCAAAGTGGT
ACCCAATCCCTTCTCAGAGTCTGGGGGTGATATGAAAGAGTGGTACCACATTAAGTGCATGTTT
GAGAAACTGGAGCGGGCGCGGGCCACCACAAAAAAAATTGAAGACCTCACAGAGCTGGAAGGCT
GGGAAGAGCTGGAAGATAATGAAAAGGAACAGATAAGCCAGCACATTGCAGACCTGTCTTCCAA
GACAGCTGCCACACCGAAGAAGAAAGCTACTGTCCAGGCTAAGCTGACAACCACTGGCCAAGTG
ACATCACCAGTGAAAGGCGCTTCGTTTATTACCAGTACCAATCCCCGGAAATTTTCTGGCTTTT
CAGCAGCCAAACCGAACAACTCTGAGCAAGACCCCTCAAGCCCTGCTCCTAAGACCAGTCTGTC
CGCAAGTAAATGTGACCCTAAGCACAAAGATTGTCTACTACGAGAATTCCGGAAGCTGTGTGCC
ATGGTAGCTGAAAATCCTAGCTATAACACCAAGACCCAGATCATCCACGACTTCTTGCAGAAAG
GCTCCACAGGAGATGGCTTCCGAGGCGATGTGTACCTGACAGTGAAGCTGCTGCTGCCTGGTGT
CATCAAGAGTGTGTACAACTTGAATGATAAGCAGATAGTGAAACTGTTCAGCCGAATTTTTAAC
TGCAACCCAGATGATATGGCCCGGGACCTAGAACAGGGTGACGTGTCCGAGACGATCAGAGTCT
TCTTTGAGCAGAGCAAGTCTTTTCCCCCAGCTGCCAAAAGCCTCCTCACCATCCAGGAGGTGGA
TGCATTTCTTCTGCACCTCTCCAAGCTCACCAAAGAGGATGAGCAGCAGCAGGCCCTGCAGGAC
ATTGCTTCCAGGTGTACAGCCAATGACCTTAAGTGCATTATCCGGCTGATCAAACACGATCTGA
AGATGAACTCGGGTGCAAAACACGTGTTAGATGCCCTTGACCCCAATGCTTATGAAGCCTTCAA
AGCATCACGCAACCTGCAGGATGTGGTGGAGCGGGTCCTTCACAATGAGCAGGAGGTGGAGAAG
GACCCAGGCCGGCGTCGGGCTCTGAGTGTCCAGGCCTCATTGATGACACCTGTGCAACCCATGC
TGGCTGAGGCCTGCAAGTCCATTGAGTATGCAATGAAGAAGTGTCCCAATGGCATGTTCTCTGA
GATCAAGTACGATGGTGAGCGAGTCCAGGTGCATAAGAAGGGAGACCATTTCAGCTACTTCAGC
CGCAGTCTCAAGCCTGTCTTGCCTCACAAGGTGGCCCACTTTAAGGACTATATTCCCAAAGCGT
TTCCTGGGGGTCAAAGCATGATCTTGGACTCTGAAGTGCTCCTGATTGATAACAACACAGGCAA
ACCACTGCCCTTTGGGACCCTGGGAGTACACAAGAAAGCTGCTTTCCAGGATGCTAATGTCTGC
CTGTTTGTTTTTGATTGTATCTACTTTAATGATGTCAGCTTGATGGACAGGCCTCTCTGTGAGC
GACGGAAGTTTCTTCATGATAACATGGTTGAAATCCGTAACCGGATCATGTTCTCAGAAATGAA
GCAAGTCACAAAAGCTTCAGACCTGGCTGACATGATAAACCGGGTGATCCGAGAGGGCCTGGAA
GGTTTGGTGCTAAAGGATGTGAAGGGTACATATGAGCCTGGAAAACGACACTGGCTGAAAGTTA
AGAAAGACTATTTGAACGAGGGGGCCATGGCTGATACAGCTGATCTGGTGGTTCTTGGGGCCTT
CTATGGGCAAGGGAGCAAAGGTGGAATGATGTCCATCTTCCTCATGGGCTGCTATGACCCCGAC
AGCCAGAAGTGGTGCACTGTTACAAAATGTGCTGGAGGCCATGACGATGCCACACTTGCCCGCC
TGCAGAAAGAGCTAGATATGGTGAAGATTAGCAAGGATCCTAGCAAGATACCCAGCTGGCTGAA
GATCAACAAGATCTACTATCCTGACTTTATCGTCCCAGACCCAAAGAAAGCTGCTGTGTGGGAG
ATCACAGGAGCAGAATTCTCTCGATCTGAGGCGCATACTGCTGATGGGATCTCCATCCGATTTC
CTCGATGCACCCGAATCCGGGATGACAAGGACTGGAAATCTGCCACTAACCTCCCCCAACTCAA
GGAACTGTACCAGCTGTCCAAAGACAAGGCAGACTTCGCTGTGGTGGCTGGAGATGAGGGGAGC
TCCACTACTGGAGGCAGCAATGGAGAGAAGCTGGCTGTGAAGTCTTCTCCTGTCAAAGTGGGGA
TGAAGAGGAAAGCTGCTGATGAGACCCCAGGCCTGACAAAGGCGCTGTTGGATGTCTTCACTGG
GGTGAGGCTCTACTTGCCACCTTCTACACCAGACTTCAGACGGCTCAAACGTTACTTTGTGGCA
TTCAACGGGGACCTGGTACAGGAATTTGACATGGCCTCAGCCACACATGTGCTGGGTAACAGGG
ACAAGAACACTGATGCCCAGTTGGTCTCTTCAGAGTGGATTTGGGCATGCATCCGGAAACGGAG
GCTGGTAGCTCCCTGCTAGGACTTTGCTTTTCCTGCTAACTCTACCGATACACGAGGCTCAGCC
TGACGGGTAGAGGCCTGTTCGCCAAGCAGCGCACCTTCTCACATCCTCCGCCTCTTTATGGTCT
CTTCTGGATCGGGAGTTAGCTGCTGTGGACACAAGCAGTTTAATTGGATCTTCCCAGGTGCTAG
TTTTGTCTGAGGTGCTGATGACCAACTTAAACCCTCAATCACACTAGGCACAGCACTCTGCCAC
TGAACTACAGCTTTATAAATAAGAAATGGGGATCAGAAGTTCAAGGCTAGCCTGGGGTAAGAAT
TTGAACAAGAATAAGCATACTTTCCCCCACTGGTCCCATCTAGTGTTCCTCAGTGACGAAGGAG
TGCTGAGCGGAATCTACTTCCTGTGCTCCTCGCTTCCACGTGCATCTTAAAGGTGTATTTAAAC
TGTTCTCAAACACTTCTTATACCTGGCAAAACCTTTATTATGTCTGGTCCAAACCCCCATGTGA
AAGAACAAAGTGGTCTCCAAATTTCCAGGTCATTGCCTGGAGGGAGAGCTGACATCTACAGAAA
AGTGTCCTCCTTGGAGACAGAGGCTCCTTGAAGGTGAATTTGCCTCATCAAAATCTGACTGCTC
TCAGCAGCACAGGTCCATAGCTGGGAAAATCTACATACCCTGCCTACCAAGGTTGGCTTCTATG
CCATGTGTGGCAGATGTCCTTGAAGGGGAAAGAAAATGATTTCTGTGTATAACTGCACACAAGG
GGTATTTTGCCACAGTGGAAGTGTCCTAAACTAGCCTTATCTGATTGTCAAGCCTTGAAATGGG
ATTAGTGTGACTGGCGAAAGCCATAAACATTTCAAGACATCTTCAAATGGTCTCAAGTTACCGG
TGACATCACATCATCTGAGTATCAGTTCCTCAAGAGGAATGGGCAGTCACTGTTGCCAAATCAC
TGGGCAGCGGCCAGTAACCTCAGACACCTTGTTGAAGGCATGCAACACGGAGCCTGGTAAAGAT
ATTATCCAGGAGGAGGCCTAGCTTACACCTCACTTGTTAAAAGTTCACATTTGGGTCTAAGCAT
GGAACTGTAGTAGACCGCCTTCTTTGTCTATGTTGTGCCACCTCTTGAAGAGCAGCTCTGTTCT
TATTAACTCAGCAGGCTTTTCTATCCACCTGTGAGCTAGGTTAATATGATGGGACCTCTTAAAC
ACTTATGTGAGCCTCTAAGATACAGACCTACCACCCCACGTAACTCCTAAAGTAACATCCCACT
AGGAGGCTGCTTACTAGTCTGGCTGTCTTTCTCCTATTTTATAGATGCTCTGACTAGGGTAGAG
TAAGCGACATTCAGTCTGGTAAGTTAAACTTTTTTTATTCTAGCCTCAAGGCGGAAGCTGCTTT
GTGCTTTGAACACTTGGCTTCCTTGCCCAAGCAGCTTGGTAGAGCATCAAAGATGACTTCCCCA
TCACACAGGGCTGGAAGTTTGTCCCTTTGTCCCTTTAATGCCTTACTATATAGTCACTTCAGCT
TGCTGTCTGTACATTTCCCTTTGCAGAGGTTAGGCTGTATGTAGACCTTTGTATCTTTCCTGTC
TTTCCACACAAGCCTAAGCATGACCTGAAACCCCCATCCCCCAAGGCTGGAAACATGCTCTCTG
TGGCTTTTGTTTACACAATGCCAGTTGATGGCAGGCAGTGCTCATTATGGGATGCTCAACAGAT
CCGGCCATCAATAAGAGACAGGGTAGAATCCTTTCATCCAGCTCTCCCATAGGTGATACACTCC
ACTCCACTCCCCTTAGGCACCTGGTCAGGTAGGTGGGTACAGGCCTGTGTCTACTCTGCAGTCT
GCTCTTTAGGCTGGGCCAACCTTGGAGCCACACTTGTCTGTATCCAAACGCTACTGTCAGTGTT
TTGGGGTAACTTGAAAACTTAACTGCCTACCTAGCTGTCTTGAGATTCCTTTCACTTAGCTCTT
GAAGGCCCCTCTACAGTGGGACTGTAATAACTTCACACGGTGCTTGCCGTTTGCTCTTGAATCA
CCCTTACACTTAGCTCCACGAGTAACTGTTCCACAATCCCATGTACTCTTGTGGATCTTGGCCA
GGTCACAACACAGAGCATGTGGCCTGATGTCTGCCCACGTTTACAAGTGTTTTGGGAACCTCTG
GTATCATCCCCCCACACCAGATGGAACAGGCATCTGTATTTAAACTTTATTACAAAATTATAAA
GCAGAGCTCTGTAACAAAAAATACACATTTGGGTATGCTTACCACCCAGGTGAGAGAATCAATG
TAAGCCACTTGGAGCTATACATTTATATCCAAGAGATCTCAAATGTGTACAACATAGACTATTA
ATTCCTTTACAGCTTGTTAGTTTAGAACCGGCTATTCCAACCAGTCAGCATCTTTGAAAACTAA
GTCTCAACTAAAATCTTGGCGCAATCGGCAAAGTCCACAGAATAATTGGAAGGATTAGGTGTTT
CCACATTAATTAAGACCAAGGATCCGTGAAGAACAGAAAAAGGGGCTCAGGTATTTAAAAAAAA
AAATCAGTTTTTCTACCTGAGATATTAACTGGAATGAGTTCCAACTTCCATTTGGTTTAACAAT
AAAAAGGTTATTTGA

hide sequence

RefSeq Acc Id:

XM_039086028 ⟹ XP_038941956

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,719,677 - 67,741,141 (+)	NCBI

RefSeq Acc Id:

XM_039086029 ⟹ XP_038941957

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,718,320 - 67,741,141 (+)	NCBI

RefSeq Acc Id:

XM_039086030 ⟹ XP_038941958

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,718,537 - 67,741,141 (+)	NCBI

RefSeq Acc Id:

XM_039086031 ⟹ XP_038941959

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,719,943 - 67,733,236 (+)	NCBI

RefSeq Acc Id:

XR_005489835

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,719,943 - 67,738,425 (+)	NCBI

RefSeq Acc Id:

XR_005489836

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	67,719,943 - 67,738,425 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012011	(Get FASTA)	NCBI Sequence Viewer
	NP_001380964	(Get FASTA)	NCBI Sequence Viewer
	NP_001380965	(Get FASTA)	NCBI Sequence Viewer
	XP_006247051	(Get FASTA)	NCBI Sequence Viewer
	XP_006247052	(Get FASTA)	NCBI Sequence Viewer
	XP_008766242	(Get FASTA)	NCBI Sequence Viewer
	XP_008766243	(Get FASTA)	NCBI Sequence Viewer
	XP_038941956	(Get FASTA)	NCBI Sequence Viewer
	XP_038941957	(Get FASTA)	NCBI Sequence Viewer
	XP_038941958	(Get FASTA)	NCBI Sequence Viewer
	XP_038941959	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85959	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001012011 ⟸ NM_001012011

- Sequence:

show sequence

MTLAFKTLFPRNLCALGRKELCLFSEQHHWPAIRQFSQWSETNLLCGCCLLQRRKPVLSFQRGH
LRPRATHLISWSGSHVGLCTGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPF
SESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAAT
PKKKATVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAAKPNNSEQDPSSPAPKTSLSASKC
DPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQKGSTGDGFRGDVYLTVKLLLPGVIKSV
YNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDAFLL
HLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRN
LQDVVERVLHNEQEVEKDPGRRRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYD
GERVQVHKKGDHFSYFSRSLKPVLPHKVAHFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPF
GTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTK
ASDLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQG
SKGGMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKI
YYPDFIVPDPKKAAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQ
LSKDKADFAVVAGDEGSSTTGGSNGENEGTAGSTVPRKGPKGPPSKSSASAKKTEQKLNDPSSR
GGEKLAVKSSPVKVGMKRKAADETPGLTKRRRASRQRGRRAMRTGRR

hide sequence

RefSeq Acc Id:	XP_006247051 ⟸ XM_006246989
- Peptide Label:	isoform X2
- UniProtKB:	A0A096MKE9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLAFKTLFPRNLCALGRKELCLFSEQHHWPAIRQFSQWSETNLLCGCCLLQRRKPVLSFQRGH LRPRATHLISWSGSHVGLCTGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPF SESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAAT PKKKATVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAAKPNNSEQDPSSPAPKTSLSASKC DPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQKGSTGDGFRGDVYLTVKLLLPGVIKSV YNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDAFLL HLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRN LQDVVERVLHNEQEVEKDPGRRRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYD GERVQVHKKGDHFSYFSRSLKPVLPHKVAHFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPF GTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTK ASDLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQG SKGGMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKI YYPDFIVPDPKKAAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQ LSKDKADFAVVAGDEGSSTTGGSNGENEGTAGSTVPRKGPKGPPSKSSASAKKTEQKLNDPSSR GGEKLAVKSSPVKVGMKRKAADETPGLTKALLDVFTGVRLYLPPSTPDFRRLKRYFVAFNGDLV QEFDMASATHVLGNRDKNTDAQLVSSEWIWACIRKRRLVAPC hide sequence

RefSeq Acc Id:	XP_006247052 ⟸ XM_006246990
- Peptide Label:	isoform X2
- UniProtKB:	A0A096MKE9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLAFKTLFPRNLCALGRKELCLFSEQHHWPAIRQFSQWSETNLLCGCCLLQRRKPVLSFQRGH LRPRATHLISWSGSHVGLCTGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPF SESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAAT PKKKATVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAAKPNNSEQDPSSPAPKTSLSASKC DPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQKGSTGDGFRGDVYLTVKLLLPGVIKSV YNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDAFLL HLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRN LQDVVERVLHNEQEVEKDPGRRRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYD GERVQVHKKGDHFSYFSRSLKPVLPHKVAHFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPF GTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTK ASDLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQG SKGGMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKI YYPDFIVPDPKKAAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQ LSKDKADFAVVAGDEGSSTTGGSNGENEGTAGSTVPRKGPKGPPSKSSASAKKTEQKLNDPSSR GGEKLAVKSSPVKVGMKRKAADETPGLTKALLDVFTGVRLYLPPSTPDFRRLKRYFVAFNGDLV QEFDMASATHVLGNRDKNTDAQLVSSEWIWACIRKRRLVAPC hide sequence

RefSeq Acc Id:

XP_008766243 ⟸ XM_008768021

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTLAFKTLFPRNLCALGRKELCLFSEQHHWPAIRQFSQWSETNLLCGCCLLQRRKPVLSFQRGH
LRPRATHLISWSGSHVGLCTGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPF
SESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAAT
PKKKATVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAAKPNNSEQDPSSPAPKTSLSASKC
DPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQKGSTGDGFRGDVYLTVKLLLPGVIKSV
YNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDAFLL
HLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRN
LQDVVERVLHNEQEVEKDPGRRRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYD
GERVQVHKKGDHFSYFSRSLKPVLPHKVAHFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPF
GTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTK
ASDLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQG
SKGGMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKI
YYPDFIVPDPKKAAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQ
LSKDKADFAVVAGDEGSSTTGGSNGEKLAVKSSPVKVGMKRKAADETPGLTKALLDVFTGVRLY
LPPSTPDFRRLKRYFVAFNGDLVQEFDMASATHVLGNRDKNTDAQLVSSEWIWACIRKRRLVAP
C

hide sequence

RefSeq Acc Id:

XP_008766242 ⟸ XM_008768020

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTLAFKTLFPRNLCALGRKELCLFSEQHHWPAIRQFSQWSETNLLCGCCLLQRRKPVLSFQRGH
LRPRATHLISWSGSHVGLCTGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPF
SESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAAT
PKKKATVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAKPNNSEQDPSSPAPKTSLSASKCD
PKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQKGSTGDGFRGDVYLTVKLLLPGVIKSVY
NLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDAFLLH
LSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNL
QDVVERVLHNEQEVEKDPGRRRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDG
ERVQVHKKGDHFSYFSRSLKPVLPHKVAHFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPFG
TLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKA
SDLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGS
KGGMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIY
YPDFIVPDPKKAAVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQL
SKDKADFAVVAGDEGSSTTGGSNGENEGTAGSTVPRKGPKGPPSKSSASAKKTEQKLNDPSSRG
GEKLAVKSSPVKVGMKRKAADETPGLTKALLDVFTGVRLYLPPSTPDFRRLKRYFVAFNGDLVQ
EFDMASATHVLGNRDKNTDAQLVSSEWIWACIRKRRLVAPC

hide sequence

RefSeq Acc Id:

ENSRNOP00000052836 ⟸ ENSRNOT00000055982

RefSeq Acc Id:

ENSRNOP00000069379 ⟸ ENSRNOT00000084076

RefSeq Acc Id:

ENSRNOP00000068489 ⟸ ENSRNOT00000076739

RefSeq Acc Id:

ENSRNOP00000068142 ⟸ ENSRNOT00000076703

RefSeq Acc Id:	XP_038941957 ⟸ XM_039086029
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038941958 ⟸ XM_039086030
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038941956 ⟸ XM_039086028
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038941959 ⟸ XM_039086031
- Peptide Label:	isoform X4

Protein Domains

BRCT DNA_LIGASE_A3 PARP-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697515

Promoter ID:

EPDNEW_R8039

Type:

initiation region

Name:

Lig3_1

Description:

DNA ligase 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	70,134,766 - 70,134,826	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309875	AgrOrtholog
Ensembl Genes	ENSRNOG00000021815	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000052836	UniProtKB/TrEMBL
	ENSRNOP00000068142	UniProtKB/TrEMBL
	ENSRNOP00000068489	UniProtKB/TrEMBL
	ENSRNOP00000069379	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055982	UniProtKB/TrEMBL
	ENSRNOT00000076703	UniProtKB/TrEMBL
	ENSRNOT00000076739	UniProtKB/TrEMBL
	ENSRNOT00000084076	UniProtKB/TrEMBL
Gene3D-CATH	1.10.3260.10	UniProtKB/TrEMBL
	3.30.1740.10	UniProtKB/TrEMBL
	3.40.50.10190	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7135421	IMAGE-MGC_LOAD
InterPro	BRCT_dom	UniProtKB/TrEMBL
	BRCT_dom_sf	UniProtKB/TrEMBL
	DNA_ligase	UniProtKB/TrEMBL
	DNA_ligase_A_C	UniProtKB/TrEMBL
	DNA_ligase_A_M	UniProtKB/TrEMBL
	DNA_ligase_A_N	UniProtKB/TrEMBL
	DNA_ligase_CS	UniProtKB/TrEMBL
	DNA_ligase_N_sf	UniProtKB/TrEMBL
	LIG3_BRCT	UniProtKB/TrEMBL
	NA-bd_OB-fold	UniProtKB/TrEMBL
	Znf_PARP	UniProtKB/TrEMBL
	Znf_PARP_sf	UniProtKB/TrEMBL
KEGG Report	rno:303369	UniProtKB/TrEMBL
MGC_CLONE	MGC:95328	IMAGE-MGC_LOAD
NCBI Gene	303369	ENTREZGENE
Pfam	DNA_ligase_A_C	UniProtKB/TrEMBL
	DNA_ligase_A_M	UniProtKB/TrEMBL
	DNA_ligase_A_N	UniProtKB/TrEMBL
	LIG3_BRCT	UniProtKB/TrEMBL
	zf-PARP	UniProtKB/TrEMBL
PhenoGen	Lig3	PhenoGen
PROSITE	BRCT	UniProtKB/TrEMBL
	DNA_LIGASE_A1	UniProtKB/TrEMBL
	DNA_LIGASE_A2	UniProtKB/TrEMBL
	DNA_LIGASE_A3	UniProtKB/TrEMBL
	PARP_ZN_FINGER_1	UniProtKB/TrEMBL
	PARP_ZN_FINGER_2	UniProtKB/TrEMBL
SMART	BRCT	UniProtKB/TrEMBL
	zf-PARP	UniProtKB/TrEMBL
Superfamily-SCOP	Nucleic_acid_OB	UniProtKB/TrEMBL
	SSF117018	UniProtKB/TrEMBL
	SSF52113	UniProtKB/TrEMBL
TIGRFAMs	dnl1	UniProtKB/TrEMBL
UniProt	A0A096MJI5_RAT	UniProtKB/TrEMBL
	A0A096MKE9	ENTREZGENE, UniProtKB/TrEMBL
	Q5U2M4_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-04	Lig3	DNA ligase 3	Lig3	ligase III, DNA, ATP-dependent	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Lig3	ligase III, DNA, ATP-dependent	Lig3_predicted	ligase III, DNA, ATP-dependent (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Lig3_predicted	ligase III, DNA, ATP-dependent (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)