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Gene: Polr2a (RNA polymerase II subunit A) Rattus norvegicus
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Symbol: Polr2a
Name: RNA polymerase II subunit A
Description: Predicted to contribute to RNA polymerase II activity. Involved in cellular response to oxygen levels and response to organic cyclic compound. Localizes to nucleus. Predicted to colocalize with Prp19 complex. Orthologous to human POLR2A (RNA polymerase II subunit A); PARTICIPATES IN RNA polymerase II transcription pathway; Huntington's disease pathway; purine metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: MODEL
Also known as: DNA-directed RNA polymerase II subunit RPB1; Polr2a_mapped; Polymerase (RNA II (DNA directed), large polypeptide; polymerase (RNA) II (DNA directed) polypeptide A; polymerase (RNA) II (DNA directed) polypeptide A (mapped); polymerase (RNA) II (DNA directed) polypeptide A, 220kDa; polymerase (RNA) II subunit A; Rpo2-1
Orthologs:
Homo sapiens (human) : POLR2A (RNA polymerase II subunit A)  HGNC  Alliance
Mus musculus (house mouse) : Polr2a (polymerase (RNA) II (DNA directed) polypeptide A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Polr2a (RNA polymerase II subunit A)
Pan paniscus (bonobo/pygmy chimpanzee) : POLR2A (RNA polymerase II subunit A)
Canis lupus familiaris (dog) : POLR2A (RNA polymerase II subunit A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Polr2a (RNA polymerase II subunit A)
Sus scrofa (pig) : POLR2A (RNA polymerase II subunit A)
Chlorocebus sabaeus (African green monkey) : POLR2A (RNA polymerase II subunit A)
Heterocephalus glaber (naked mole-rat) : Polr2a (RNA polymerase II subunit A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01056,339,277 - 56,364,888 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,339,284 - 56,365,084 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,084,677 - 56,110,778 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,552,872 - 56,579,172 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1053,606,814 - 53,632,373 (-)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Polr2a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1587326
Created: 2006-11-19
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.