Snx11 (sorting nexin 11) - Rat Genome Database

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Gene: Snx11 (sorting nexin 11) Rattus norvegicus
Analyze
Symbol: Snx11
Name: sorting nexin 11
RGD ID: 1307319
Description: Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to be involved in vesicle organization. Predicted to be located in cytoplasm and plasma membrane. Predicted to be active in endosome. Orthologous to human SNX11 (sorting nexin 11); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC303493; sorting nexin-11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81082,238,475 - 82,249,264 (-)NCBIGRCr8
mRatBN7.21081,742,020 - 81,752,778 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1081,742,024 - 81,752,712 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1086,690,008 - 86,700,458 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01086,188,062 - 86,198,512 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01081,580,662 - 81,591,112 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01084,628,420 - 84,639,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,628,424 - 84,639,111 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,421,491 - 84,432,034 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41085,516,530 - 85,526,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11085,530,903 - 85,541,265 (-)NCBI
Celera1080,504,024 - 80,513,792 (-)NCBICelera
Cytogenetic Map10q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snx11Rathereditary breast ovarian cancer syndrome  ISOSNX11 (Homo sapiens)8554872ClinVar Annotator: match by term: Breast-ovarian cancer more ...ClinVarPMID:38922859

1 to 20 of 45 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snx11Rat1,2-dichloroethane decreases expressionISOSnx11 (Mus musculus)6480464ethylene dichloride results in decreased expression of SNX11 mRNACTDPMID:28960355
Snx11Rat1,2-dimethylhydrazine multiple interactionsISOSnx11 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of SNX11 mRNACTDPMID:22206623
Snx11Rat17alpha-ethynylestradiol increases expressionISOSnx11 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of SNX11 mRNACTDPMID:17942748
Snx11Rat17alpha-ethynylestradiol multiple interactionsISOSnx11 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of SNX11 mRNACTDPMID:17942748
Snx11Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of SNX11 mRNACTDPMID:32145629
Snx11Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOSnx11 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of SNX11 mRNACTDPMID:21570461
Snx11Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of SNX11 mRNACTDPMID:21215274
Snx11Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOSnx11 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of SNX11 mRNACTDPMID:17942748
Snx11Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of SNX11 mRNACTDPMID:21346803
Snx11Rat3,4-methylenedioxymethamphetamine increases expressionISOSnx11 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of SNX11 mRNACTDPMID:20188158
Snx11Rat4,4'-sulfonyldiphenol increases methylationISOSnx11 (Mus musculus)6480464bisphenol S results in increased methylation of SNX11 exonCTDPMID:33297965
Snx11Rat4,4'-sulfonyldiphenol affects methylationISOSnx11 (Mus musculus)6480464bisphenol S affects the methylation of SNX11 geneCTDPMID:31683443
Snx11Rataflatoxin B1 increases expressionISOSnx11 (Mus musculus)6480464Aflatoxin B1 results in increased expression of SNX11 mRNACTDPMID:19770486
Snx11Rataflatoxin B1 decreases expressionEXP 6480464Aflatoxin B1 results in decreased expression of SNX11 mRNACTDPMID:33354967
Snx11Ratall-trans-retinoic acid increases expressionISOSNX11 (Homo sapiens)6480464Tretinoin results in increased expression of SNX11 mRNACTDPMID:33167477
Snx11Ratalpha-Zearalanol multiple interactionsEXP 6480464[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of SNX11 mRNACTDPMID:35163327
Snx11Ratantirheumatic drug decreases expressionISOSNX11 (Homo sapiens)6480464Antirheumatic Agents results in decreased expression of SNX11 mRNACTDPMID:24449571
Snx11Ratbenzo[a]pyrene increases expressionISOSnx11 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of SNX11 mRNACTDPMID:22228805
Snx11Ratbis(2-ethylhexyl) phthalate increases expressionISOSnx11 (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of SNX11 mRNACTDPMID:34319233
Snx11Ratcadmium atom decreases expressionISOSnx11 (Mus musculus)6480464Cadmium results in decreased expression of SNX11 mRNACTDPMID:24067728

1 to 20 of 45 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snx11Ratintracellular protein transport involved_inIEAInterPro:IPR0435441600115GO_REF:0000002InterProGO_REF:0000002
Snx11Ratprotein transport involved_inIEAUniProtKB-KW:KW-06531600115GO_REF:0000043UniProtGO_REF:0000043
Snx11Ratvesicle organization involved_inISOSNX11 (Homo sapiens)1624291 PMID:23615901RGDPMID:23615901
Snx11Ratvesicle organization involved_inIBAPANTHER:PTN001632472 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Snx11Ratvesicle organization involved_inIEAUniProtKB:Q9Y5W9 and ensembl:ENSP000003521751600115GO_REF:0000107EnsemblGO_REF:0000107

Cellular Component
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snx11Ratcytoplasm located_inISOSNX11 (Homo sapiens)1624291 PMID:26818531RGDPMID:26818531
Snx11Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Snx11Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Snx11Ratcytoplasm located_inIEAUniProtKB:Q9Y5W9 and ensembl:ENSP000003521751600115GO_REF:0000107EnsemblGO_REF:0000107
Snx11Ratendomembrane system located_inIEAUniProtKB-SubCell:SL-01471600115GO_REF:0000044UniProtGO_REF:0000044
Snx11Ratendosome located_inISOSNX11 (Homo sapiens)1624291 PMID:23615901RGDPMID:23615901
Snx11Ratendosome located_inIEAUniProtKB:Q9Y5W9 and ensembl:ENSP000003521751600115GO_REF:0000107EnsemblGO_REF:0000107
Snx11Ratendosome is_active_inIBAPANTHER:PTN001632472 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Snx11Ratendosome located_inIEAUniProtKB-KW:KW-09671600115GO_REF:0000043UniProtGO_REF:0000043
Snx11Ratendosome located_inIEAUniProtKB-SubCell:SL-01011600115GO_REF:0000044UniProtGO_REF:0000044
Snx11Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Snx11Ratplasma membrane located_inISOSNX11 (Homo sapiens)1624291 PMID:26818531RGDPMID:26818531
Snx11Ratplasma membrane located_inIEAUniProtKB:Q9Y5W9 and ensembl:ENSP000003521751600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 13 of 13 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snx11Ratlipid binding enablesIEAUniProtKB-KW:KW-04461600115GO_REF:0000043UniProtGO_REF:0000043
Snx11Ratphosphatidylinositol binding enablesIEAInterPro:IPR001683 and InterPro:IPR0368711600115GO_REF:0000002InterProGO_REF:0000002
Snx11Ratphosphatidylinositol phosphate binding enablesISOSNX11 (Homo sapiens)1624291 PMID:23615901RGDPMID:23615901
Snx11Ratphosphatidylinositol phosphate binding enablesIBAPANTHER:PTN001632472 and UniProtKB:Q9Y5W91600115GO_REF:0000033GO_CentralGO_REF:0000033
Snx11Ratphosphatidylinositol phosphate binding enablesIEAUniProtKB:Q9Y5W9 and ensembl:ENSP000003521751600115GO_REF:0000107EnsemblGO_REF:0000107
Snx11Ratprotein binding enablesISOSNX11 (Homo sapiens)1624291UniProtKB:O75800 more ...RGDPMID:25416956 more ...


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:23615901  



Snx11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81082,238,475 - 82,249,264 (-)NCBIGRCr8
mRatBN7.21081,742,020 - 81,752,778 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1081,742,024 - 81,752,712 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1086,690,008 - 86,700,458 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01086,188,062 - 86,198,512 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01081,580,662 - 81,591,112 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01084,628,420 - 84,639,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,628,424 - 84,639,111 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,421,491 - 84,432,034 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41085,516,530 - 85,526,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11085,530,903 - 85,541,265 (-)NCBI
Celera1080,504,024 - 80,513,792 (-)NCBICelera
Cytogenetic Map10q31NCBI
SNX11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381748,107,523 - 48,123,601 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1748,103,357 - 48,123,601 (+)EnsemblGRCh38hg38GRCh38
GRCh371746,185,128 - 46,200,963 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361743,539,919 - 43,555,104 (+)NCBINCBI36Build 36hg18NCBI36
Build 341743,539,918 - 43,555,104NCBI
Celera1742,639,285 - 42,654,466 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1741,554,691 - 41,569,833 (+)NCBIHuRef
CHM1_11746,249,918 - 46,265,134 (+)NCBICHM1_1
T2T-CHM13v2.01748,970,884 - 48,986,962 (+)NCBIT2T-CHM13v2.0
Snx11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,658,372 - 96,668,538 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1196,658,381 - 96,668,385 (-)EnsemblGRCm39 Ensembl
GRCm381196,767,546 - 96,777,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,767,555 - 96,777,559 (-)EnsemblGRCm38mm10GRCm38
MGSCv371196,628,863 - 96,638,869 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,583,645 - 96,593,621 (-)NCBIMGSCv36mm8
Celera11106,414,426 - 106,424,430 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1160.1NCBI
Snx11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,051,169 - 13,056,628 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,051,649 - 13,060,479 (-)NCBIChiLan1.0ChiLan1.0
SNX11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21916,978,777 - 16,994,004 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11718,944,407 - 18,959,635 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0179,412,559 - 9,428,114 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,595,666 - 9,610,663 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,595,666 - 9,610,592 (-)Ensemblpanpan1.1panPan2
SNX11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1924,393,150 - 24,412,850 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl924,393,227 - 24,401,851 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha923,859,366 - 23,879,891 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0925,187,359 - 25,207,891 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl925,187,400 - 25,197,077 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1923,956,905 - 23,977,639 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0924,217,169 - 24,237,712 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0924,344,598 - 24,365,117 (+)NCBIUU_Cfam_GSD_1.0
Snx11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560223,839,492 - 23,850,159 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649013,224,053 - 13,235,723 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649013,224,977 - 13,235,723 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1224,351,390 - 24,360,917 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11224,351,280 - 24,360,921 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,209,912 - 24,219,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11668,504,236 - 68,527,676 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1668,504,640 - 68,529,030 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607739,564,977 - 39,579,973 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247954,714,350 - 4,718,526 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247954,710,750 - 4,718,287 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Snx11
13 total Variants

Predicted Target Of
Summary Value
Count of predictions:216
Count of miRNA genes:148
Interacting mature miRNAs:183
Transcripts:ENSRNOT00000011474
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 82 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat

1 to 10 of 82 rows
AI117694  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21081,742,154 - 81,742,261 (+)MAPPERmRatBN7.2
Rnor_6.01084,628,555 - 84,628,661NCBIRnor6.0
Rnor_5.01084,421,626 - 84,421,732UniSTSRnor5.0
RGSC_v3.41085,516,665 - 85,516,771UniSTSRGSC3.4
Celera1080,504,159 - 80,504,265UniSTS
Cytogenetic Map10q31UniSTS
AW526629  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21081,743,393 - 81,743,572 (+)MAPPERmRatBN7.2
Rnor_6.01084,629,794 - 84,629,972NCBIRnor6.0
Rnor_5.01084,422,865 - 84,423,043UniSTSRnor5.0
RGSC_v3.41085,517,904 - 85,518,082UniSTSRGSC3.4
Celera1080,505,398 - 80,505,576UniSTS
RH 3.4 Map10769.9UniSTS
Cytogenetic Map10q31UniSTS
MARC_23527-23528:1027525177:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81082,244,468 - 82,244,917 (+)Marker Load Pipeline
Rnor_6.01084,634,415 - 84,634,856NCBIRnor6.0
Rnor_5.01084,427,324 - 84,427,771UniSTSRnor5.0
RGSC_v3.41085,522,199 - 85,522,646UniSTSRGSC3.4
Celera1080,509,095 - 80,509,543UniSTS
Cytogenetic Map10q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000011474   ⟹   ENSRNOP00000011474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1081,742,024 - 81,752,712 (-)Ensembl
Rnor_6.0 Ensembl1084,628,424 - 84,639,105 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000081348   ⟹   ENSRNOP00000070897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1081,742,024 - 81,751,743 (-)Ensembl
Rnor_6.0 Ensembl1084,628,424 - 84,639,105 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089146   ⟹   ENSRNOP00000070277
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1081,747,792 - 81,752,697 (-)Ensembl
Rnor_6.0 Ensembl1084,629,744 - 84,639,111 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096544   ⟹   ENSRNOP00000077201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1081,742,024 - 81,749,624 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114616   ⟹   ENSRNOP00000092915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1081,742,024 - 81,750,948 (-)Ensembl
RefSeq Acc Id: NM_001012012   ⟹   NP_001012012
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,238,475 - 82,249,166 (-)NCBI
mRatBN7.21081,742,020 - 81,752,712 (-)NCBI
Rnor_6.01084,628,420 - 84,639,105 (-)NCBI
Rnor_5.01084,421,491 - 84,432,034 (-)NCBI
RGSC_v3.41085,516,530 - 85,526,895 (-)RGD
Celera1080,504,024 - 80,513,792 (-)RGD
Sequence:
RefSeq Acc Id: NM_001199169   ⟹   NP_001186098
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,238,475 - 82,249,166 (-)NCBI
mRatBN7.21081,742,020 - 81,752,712 (-)NCBI
Rnor_6.01084,628,420 - 84,639,105 (-)NCBI
Rnor_5.01084,421,491 - 84,432,034 (-)NCBI
Celera1080,504,024 - 80,513,792 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006247196   ⟹   XP_006247258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,238,805 - 82,249,226 (-)NCBI
mRatBN7.21081,742,020 - 81,752,775 (-)NCBI
Rnor_6.01084,628,420 - 84,639,125 (-)NCBI
Rnor_5.01084,421,491 - 84,432,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006247198   ⟹   XP_006247260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,238,805 - 82,249,189 (-)NCBI
mRatBN7.21081,742,020 - 81,752,736 (-)NCBI
Rnor_6.01084,628,420 - 84,639,125 (-)NCBI
Rnor_5.01084,421,491 - 84,432,034 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039086077   ⟹   XP_038942005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,241,997 - 82,249,264 (-)NCBI
mRatBN7.21081,745,539 - 81,752,778 (-)NCBI
RefSeq Acc Id: XM_063269114   ⟹   XP_063125184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81082,238,805 - 82,249,092 (-)NCBI
1 to 5 of 11 rows
1 to 5 of 11 rows
RefSeq Acc Id: NP_001012012   ⟸   NM_001012012
- UniProtKB: D4A3W4 (UniProtKB/TrEMBL),   A6HIG1 (UniProtKB/TrEMBL),   A0A8I5Y9D6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001186098   ⟸   NM_001199169
- UniProtKB: D4A3W4 (UniProtKB/TrEMBL),   A6HIG1 (UniProtKB/TrEMBL),   A0A8I5Y9D6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247258   ⟸   XM_006247196
- Peptide Label: isoform X1
- UniProtKB: D4A3W4 (UniProtKB/TrEMBL),   A6HIG1 (UniProtKB/TrEMBL),   A0A8I5Y9D6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247260   ⟸   XM_006247198
- Peptide Label: isoform X1
- UniProtKB: D4A3W4 (UniProtKB/TrEMBL),   A6HIG1 (UniProtKB/TrEMBL),   A0A8I5Y9D6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070277   ⟸   ENSRNOT00000089146
PX

Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXH9-F1-model_v2 AlphaFold A0A0G2JXH9 1-299 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13697633
Promoter ID:EPDNEW_R8158
Type:initiation region
Name:Snx11_1
Description:sorting nexin 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01084,639,076 - 84,639,136EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-23481 BioCyc
Ensembl Genes ENSRNOG00000008642 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011474 ENTREZGENE
  ENSRNOT00000011474.7 UniProtKB/TrEMBL
  ENSRNOT00000081348.2 UniProtKB/TrEMBL
  ENSRNOT00000089146.2 UniProtKB/TrEMBL
  ENSRNOT00000096544.1 UniProtKB/TrEMBL
  ENSRNOT00000114616.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1520.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7132863 IMAGE-MGC_LOAD
InterPro IPR001683 UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SNX10/11 UniProtKB/TrEMBL
KEGG Report rno:303493 UniProtKB/TrEMBL
MGC_CLONE MGC:105892 IMAGE-MGC_LOAD
NCBI Gene 303493 ENTREZGENE
PANTHER PTHR46209 UniProtKB/TrEMBL
  SORTING NEXIN-11 UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/TrEMBL
PhenoGen Snx11 PhenoGen
PROSITE PS50195 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008642 RatGTEx
SMART SM00312 UniProtKB/TrEMBL
Superfamily-SCOP 64268 UniProtKB/TrEMBL
UniProt A0A0G2JXH9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JZ37_RAT UniProtKB/TrEMBL
  A0A8I5Y9D6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AWA3_RAT UniProtKB/TrEMBL
  A6HIG1 ENTREZGENE, UniProtKB/TrEMBL
  D4A3W4 ENTREZGENE, UniProtKB/TrEMBL
  Q5RJQ6 ENTREZGENE, UniProtKB/TrEMBL
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Snx11  sorting nexin 11  Snx11_predicted  sorting nexin 11 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Snx11_predicted  sorting nexin 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED