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Gene: Snx11 (sorting nexin 11) Rattus norvegicus

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Symbol:

Snx11

Name:

sorting nexin 11

RGD ID:

1307319

Description:

Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to be involved in vesicle organization. Predicted to be located in cytoplasm and plasma membrane. Predicted to be active in endosome. Orthologous to human SNX11 (sorting nexin 11); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC303493; sorting nexin-11

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX11 (sorting nexin 11)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Snx11 (sorting nexin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Snx11 (sorting nexin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX11 (sorting nexin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNX11 (sorting nexin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Snx11 (sorting nexin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX11 (sorting nexin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNX11 (sorting nexin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx11 (sorting nexin 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SNX11 (sorting nexin 11)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Snx11 (sorting nexin 11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	snx11 (sorting nexin 11)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	snx11	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	82,238,475 - 82,249,264 (-)	NCBI		GRCr8
mRatBN7.2	10	81,742,020 - 81,752,778 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	81,742,024 - 81,752,712 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	86,690,008 - 86,700,458 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	86,188,062 - 86,198,512 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	81,580,662 - 81,591,112 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	84,628,420 - 84,639,125 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	84,628,424 - 84,639,111 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	84,421,491 - 84,432,034 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	85,516,530 - 85,526,895 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	85,530,903 - 85,541,265 (-)	NCBI
Celera	10	80,504,024 - 80,513,792 (-)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hereditary breast ovarian cancer syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

cyclosporin A (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

graphite (EXP)

methidathion (ISO)

N,N-diethyl-m-toluamide (EXP)

paracetamol (EXP)

perfluorooctanoic acid (EXP)

permethrin (EXP)

rotenone (ISO)

thioacetamide (EXP)

triphenyl phosphate (EXP,ISO)

Triptolide (ISO)

triptonide (ISO)

urethane (ISO)

valdecoxib (EXP)

vinclozolin (EXP)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IEA)

vesicle organization (IBA,ISO)

Cellular Component

cytoplasm (ISO)

endosome (IBA,ISO)

plasma membrane (ISO)

Molecular Function

phosphatidylinositol phosphate binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:23615901

Genomics

Comparative Map Data

Snx11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	82,238,475 - 82,249,264 (-)	NCBI		GRCr8
mRatBN7.2	10	81,742,020 - 81,752,778 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	81,742,024 - 81,752,712 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	86,690,008 - 86,700,458 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	86,188,062 - 86,198,512 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	81,580,662 - 81,591,112 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	84,628,420 - 84,639,125 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	84,628,424 - 84,639,111 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	84,421,491 - 84,432,034 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	85,516,530 - 85,526,895 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	85,530,903 - 85,541,265 (-)	NCBI
Celera	10	80,504,024 - 80,513,792 (-)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

SNX11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	48,107,523 - 48,123,601 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	48,103,357 - 48,123,601 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	46,185,128 - 46,200,963 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	43,539,919 - 43,555,104 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	43,539,918 - 43,555,104	NCBI
Celera	17	42,639,285 - 42,654,466 (+)	NCBI		Celera
Cytogenetic Map	17	q21.32	NCBI
HuRef	17	41,554,691 - 41,569,833 (+)	NCBI		HuRef
CHM1_1	17	46,249,918 - 46,265,134 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	48,970,884 - 48,986,962 (+)	NCBI		T2T-CHM13v2.0

Snx11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	96,658,372 - 96,668,538 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	96,658,381 - 96,668,385 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	96,767,546 - 96,777,712 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	96,767,555 - 96,777,559 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	96,628,863 - 96,638,869 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	96,583,645 - 96,593,621 (-)	NCBI		MGSCv36	mm8
Celera	11	106,414,426 - 106,424,430 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	60.1	NCBI

Snx11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	13,051,169 - 13,056,628 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	13,051,649 - 13,060,479 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	16,978,777 - 16,994,004 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	18,944,407 - 18,959,635 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	9,412,559 - 9,428,114 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	9,595,666 - 9,610,663 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	9,595,666 - 9,610,592 (-)	Ensembl	panpan1.1		panPan2

SNX11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	24,393,150 - 24,412,850 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	24,393,227 - 24,401,851 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	23,859,366 - 23,879,891 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	25,187,359 - 25,207,891 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	25,187,400 - 25,197,077 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	23,956,905 - 23,977,639 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	24,217,169 - 24,237,712 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	24,344,598 - 24,365,117 (+)	NCBI		UU_Cfam_GSD_1.0

Snx11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	23,839,492 - 23,850,159 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	13,224,053 - 13,235,723 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	13,224,977 - 13,235,723 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	24,351,390 - 24,360,917 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	24,351,280 - 24,360,921 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	24,209,912 - 24,219,518 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNX11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	68,504,236 - 68,527,676 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	68,504,640 - 68,529,030 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	39,564,977 - 39,579,973 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snx11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	4,714,350 - 4,718,526 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	4,710,750 - 4,718,287 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	216
Count of miRNA genes:	148
Interacting mature miRNAs:	183
Transcripts:	ENSRNOT00000011474
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
631555	Bp134	Blood pressure QTL 134		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	81012077	91729860	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50464802	95464802	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	79272424	102982300	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
10450495	Bp383	Blood pressure QTL 383		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76743133	95464802	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
724516	Uae17	Urinary albumin excretion QTL 17	3.6		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	78707585	85720738	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67241334	98502431	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61843496	98710773	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	73695339	97272278	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	81012077	101828297	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	73049656	94495280	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	49495492	94495492	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	73695339	83061459	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	73695339	83061459	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	64139597	83061459	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61843633	83061236	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	55307972	93608131	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61843496	100198886	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49943710	94943710	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
2325836	Bp346	Blood pressure QTL 346		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76743133	84503487	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61843496	100198886	Rat
12880053	Cm104	Cardiac mass QTL 104		0.009	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	73950209	83959619	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76743133	95604677	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50604677	95604677	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

AI117694

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	81,742,154 - 81,742,261 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	84,628,555 - 84,628,661	NCBI	Rnor6.0
Rnor_5.0	10	84,421,626 - 84,421,732	UniSTS	Rnor5.0
RGSC_v3.4	10	85,516,665 - 85,516,771	UniSTS	RGSC3.4
Celera	10	80,504,159 - 80,504,265	UniSTS
Cytogenetic Map	10	q31	UniSTS

AW526629

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	81,743,393 - 81,743,572 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	84,629,794 - 84,629,972	NCBI	Rnor6.0
Rnor_5.0	10	84,422,865 - 84,423,043	UniSTS	Rnor5.0
RGSC_v3.4	10	85,517,904 - 85,518,082	UniSTS	RGSC3.4
Celera	10	80,505,398 - 80,505,576	UniSTS
RH 3.4 Map	10	769.9	UniSTS
Cytogenetic Map	10	q31	UniSTS

MARC_23527-23528:1027525177:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	82,244,468 - 82,244,917 (+)	Marker Load Pipeline
Rnor_6.0	10	84,634,415 - 84,634,856	NCBI	Rnor6.0
Rnor_5.0	10	84,427,324 - 84,427,771	UniSTS	Rnor5.0
RGSC_v3.4	10	85,522,199 - 85,522,646	UniSTS	RGSC3.4
Celera	10	80,509,095 - 80,509,543	UniSTS
Cytogenetic Map	10	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001199169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC136178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO558022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DN932564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011474 ⟹ ENSRNOP00000011474

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	81,742,024 - 81,752,712 (-)	Ensembl
Rnor_6.0 Ensembl	10	84,628,424 - 84,639,105 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081348 ⟹ ENSRNOP00000070897

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	81,742,024 - 81,751,743 (-)	Ensembl
Rnor_6.0 Ensembl	10	84,628,424 - 84,639,105 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089146 ⟹ ENSRNOP00000070277

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	81,747,792 - 81,752,697 (-)	Ensembl
Rnor_6.0 Ensembl	10	84,629,744 - 84,639,111 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096544 ⟹ ENSRNOP00000077201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	81,742,024 - 81,749,624 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114616 ⟹ ENSRNOP00000092915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	81,742,024 - 81,750,948 (-)	Ensembl

RefSeq Acc Id:

NM_001012012 ⟹ NP_001012012

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,238,475 - 82,249,166 (-)	NCBI
mRatBN7.2	10	81,742,020 - 81,752,712 (-)	NCBI
Rnor_6.0	10	84,628,420 - 84,639,105 (-)	NCBI
Rnor_5.0	10	84,421,491 - 84,432,034 (-)	NCBI
RGSC_v3.4	10	85,516,530 - 85,526,895 (-)	RGD
Celera	10	80,504,024 - 80,513,792 (-)	RGD

Sequence:

show sequence

CTCACCCGGAAGGAGAAGCCGGAATCTGCATCTGGCTATATGGTTCGGTGCTGGTGGTGTCGCT
ATAGAGAGCTGCTGCTGCTGCTCTCAGGAGCCAGCCGGGATCGTTTGTTGGCAGTACATATTGG
CTGAAGTCAGTTTTCATTTCAAGATGTTCTCTTCCGATGGGCTTTTGGTGTAGGATGTTGGAGA
ACCAAGAGCTGGAGGAGGTGATCACCGTGCGAGTTCAGGACCCCCGGCTGCAGAATGAGGGCTC
CTGGAATTCTTATGTGGATTATAAGATATTCCTCCATACGAACAGCAAGGCCTTTACTGCCAAG
ACCTCCTGTGTGCGACGGCGCTACCGTGAGTTTGTGTGGCTGAGGAAGCAGCTACAGAGGAACG
CGGGCTTGGTGCCTGTACCAGAACTTCCCGGAAAGTCCACTTTCTTTGGCAGCTCTGATGAGTT
TATTGAGAAGCGACGTCAAGGTCTCCAGCATTTCCTGGAAAAGGTCCTGCAGAGCGTGGTTCTC
CTGTCCGACAGTCAGTTGCATCTCTTCCTCCAAAGCCAGCTCTCAGTGCCCGAGATCGAAGCCT
GTGTCCAGGGCCGGGGCTCCATGACGGTGTCTGACGCCATTCTTTCCTATGCTATGTCCAACTG
TGGCTGGGCCCAGGAGGAGAGGCAGAGCACCTCTCACCTGGCTAAAGGAGACCAACTTAACAGT
TGCTGCTTTCTTCCAAGATCAGGAAGGAGGAATTCCCCTTCACCACCTCTCAGTGAAGAGAAGG
ACCACGTAGAAACCTGGGCTCCAGTAATCGACTCTGAAGGCCCATCCTTAGACAGCCCCATGCT
GCCACCCAGCTCCTCGCCAGCCTGCTGTGATCCGGCAAGACCAGATGAGGGACTCTCTGGGTCC
CAGCCTGCGAGAAGGGCTGTGGCAGGGGACCCTGCTGTGCCTTTGGATCCTGGTCAGCTAGACA
CAGTGTGGGGAAAGTGAGCTGTGGCTGTTCTCTCTGTTCTCCTGGGTGGTGGAGAAGATGCCGC
CAGGGTCACATTCAGGTGGGGTTGAGGACAGGGCGGGTGTGGGGAAGTCGGGTTGAGCATCCTC
CATTCAAATCTGCGCAGGTTTGTCATGCAGAGGTTCTGGCTGCCTGCTACAGCTCCTCCATGGG
AACAAACACCACACTGGTGTTTGTGAGTTAGGTGCAGGGCCCAGAAGCTGTTGGTTTTAAATAG
AACTGTATTTACTTTCCCAGGAGGTGAGTTTCTTCAGGTGTTTGTTTAAAGAGAACTGTCACAG
GCGAATGGTGAATGTTGGAGAACCCCTTCGTGGTAGATCTTTAGCTGCCATGTTGGACATTCCA
TGTTGGACATTGTCCCAACAGACAGTTCCTATCGTTCTATTCCCTTCTTGGCAGGCTTCCATTT
TTGCTGTAGCCCCTGGAGATTTTGGTTGTGGGAGGCTGACCTCTTGCTTGCCTCCTTGTGTGGA
CAAGGTAGCAAAGATGTAGTTGCCCCCTCCTTGCCTTGTGGCCACAATGTGACTATTTGCTGGG
CTTTCCAGCATCTTCCAAGACCTCACCAGGTTAAGTGGGGCCTGAGAGGTGTAGGCAGTTAAAG
CCTATCCAGGCATGGCTGGCACAGCCAGAGGGAAAGGAACAGGTCGGAGGCGTTGCTTGGGCAG
TCTGGGCTGCCCATCTTCTGCTTATAAAGTAGAGCTGGTGTTTCTGCAGGATTGAAGTGGGCTC
CCTTTTTCAGATCCTTTTCTTCCTCTCTTAATAACTCCATGACCCCAGAGCTTTGACTGCCAGG
GCCTACGGCTGCATTCCTTGGAAGCTGCAAGTTCAGTCCAGTGGGGCCACAGGCTTTGTTTCGG
CCGGGAAGTGAGGGCTGGGGATGGAGGTAAGGAGACCTAAGCTGTCCTGCAGACAGTGCGGCTC
CTGTCTCCTGCTGCTGAATGGGCTCTGCAGAGAGCAGGGGCTGCTAGCTGGAGTGCTAGGGCGG
GCTGAGTGCCGGGCTCACCTTGCCACTGCTCTGCTCTTAGGTTTGTGTGTGTGTCTCACTCTGG
CCATCCACTCCAGCTGTGCGGTCCACCTCAGCTGTGGCACTACTGGCCTGCATTGTGGGACTGG
CCTGGCATTTAGTTCAGAGTCGAGGGGCTTTGGCCTGAAATAAAATGCAAGTATTTAAGACTGT
TGTTGCAATTTGTGTCTAACAAGCTGTAGCAGGGAAGGAGGGAGTGAGAGCTGGCAGGAGTTAC
TTTCATAAATCATGAATTTATCAGCGTGGAAATAACACTGTAGACCTGTGCACTGGAACTCTCC
TGCATTATGTGTGTGACTCAAGTTCACCACTGCAGGAGAGACGGTTTTCCAGAGAGCTAGGATG
CAGCTCTTCTCACAGATCTGGGCATGAACCTTGTTAGGTATAATTTACCTGATGCTGCCTCCAT
CTTGGAAGCCTGTCTGAGGTGCCAGGTGCTAAAAGAGAAATAAAGTTTGTCAACAGGCAGATGC
AAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001199169 ⟹ NP_001186098

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,238,475 - 82,249,166 (-)	NCBI
mRatBN7.2	10	81,742,020 - 81,752,712 (-)	NCBI
Rnor_6.0	10	84,628,420 - 84,639,105 (-)	NCBI
Rnor_5.0	10	84,421,491 - 84,432,034 (-)	NCBI
Celera	10	80,504,024 - 80,513,792 (-)	NCBI

Sequence:

show sequence

CTCACCCGGAAGGAGAAGCCGGAATCTGCATCTGGCTATATGGTTCGGTGCTGGTGGTGTCGCT
ATAGAGAGCTGCTGCTGCTGCTCTCAGATGTTCTCTTCCGATGGGCTTTTGGTGTAGGATGTTG
GAGAACCAAGAGCTGGAGGAGGTGATCACCGTGCGAGTTCAGGACCCCCGGCTGCAGAATGAGG
GCTCCTGGAATTCTTATGTGGATTATAAGATATTCCTCCATACGAACAGCAAGGCCTTTACTGC
CAAGACCTCCTGTGTGCGACGGCGCTACCGTGAGTTTGTGTGGCTGAGGAAGCAGCTACAGAGG
AACGCGGGCTTGGTGCCTGTACCAGAACTTCCCGGAAAGTCCACTTTCTTTGGCAGCTCTGATG
AGTTTATTGAGAAGCGACGTCAAGGTCTCCAGCATTTCCTGGAAAAGGTCCTGCAGAGCGTGGT
TCTCCTGTCCGACAGTCAGTTGCATCTCTTCCTCCAAAGCCAGCTCTCAGTGCCCGAGATCGAA
GCCTGTGTCCAGGGCCGGGGCTCCATGACGGTGTCTGACGCCATTCTTTCCTATGCTATGTCCA
ACTGTGGCTGGGCCCAGGAGGAGAGGCAGAGCACCTCTCACCTGGCTAAAGGAGACCAACTTAA
CAGTTGCTGCTTTCTTCCAAGATCAGGAAGGAGGAATTCCCCTTCACCACCTCTCAGTGAAGAG
AAGGACCACGTAGAAACCTGGGCTCCAGTAATCGACTCTGAAGGCCCATCCTTAGACAGCCCCA
TGCTGCCACCCAGCTCCTCGCCAGCCTGCTGTGATCCGGCAAGACCAGATGAGGGACTCTCTGG
GTCCCAGCCTGCGAGAAGGGCTGTGGCAGGGGACCCTGCTGTGCCTTTGGATCCTGGTCAGCTA
GACACAGTGTGGGGAAAGTGAGCTGTGGCTGTTCTCTCTGTTCTCCTGGGTGGTGGAGAAGATG
CCGCCAGGGTCACATTCAGGTGGGGTTGAGGACAGGGCGGGTGTGGGGAAGTCGGGTTGAGCAT
CCTCCATTCAAATCTGCGCAGGTTTGTCATGCAGAGGTTCTGGCTGCCTGCTACAGCTCCTCCA
TGGGAACAAACACCACACTGGTGTTTGTGAGTTAGGTGCAGGGCCCAGAAGCTGTTGGTTTTAA
ATAGAACTGTATTTACTTTCCCAGGAGGTGAGTTTCTTCAGGTGTTTGTTTAAAGAGAACTGTC
ACAGGCGAATGGTGAATGTTGGAGAACCCCTTCGTGGTAGATCTTTAGCTGCCATGTTGGACAT
TCCATGTTGGACATTGTCCCAACAGACAGTTCCTATCGTTCTATTCCCTTCTTGGCAGGCTTCC
ATTTTTGCTGTAGCCCCTGGAGATTTTGGTTGTGGGAGGCTGACCTCTTGCTTGCCTCCTTGTG
TGGACAAGGTAGCAAAGATGTAGTTGCCCCCTCCTTGCCTTGTGGCCACAATGTGACTATTTGC
TGGGCTTTCCAGCATCTTCCAAGACCTCACCAGGTTAAGTGGGGCCTGAGAGGTGTAGGCAGTT
AAAGCCTATCCAGGCATGGCTGGCACAGCCAGAGGGAAAGGAACAGGTCGGAGGCGTTGCTTGG
GCAGTCTGGGCTGCCCATCTTCTGCTTATAAAGTAGAGCTGGTGTTTCTGCAGGATTGAAGTGG
GCTCCCTTTTTCAGATCCTTTTCTTCCTCTCTTAATAACTCCATGACCCCAGAGCTTTGACTGC
CAGGGCCTACGGCTGCATTCCTTGGAAGCTGCAAGTTCAGTCCAGTGGGGCCACAGGCTTTGTT
TCGGCCGGGAAGTGAGGGCTGGGGATGGAGGTAAGGAGACCTAAGCTGTCCTGCAGACAGTGCG
GCTCCTGTCTCCTGCTGCTGAATGGGCTCTGCAGAGAGCAGGGGCTGCTAGCTGGAGTGCTAGG
GCGGGCTGAGTGCCGGGCTCACCTTGCCACTGCTCTGCTCTTAGGTTTGTGTGTGTGTCTCACT
CTGGCCATCCACTCCAGCTGTGCGGTCCACCTCAGCTGTGGCACTACTGGCCTGCATTGTGGGA
CTGGCCTGGCATTTAGTTCAGAGTCGAGGGGCTTTGGCCTGAAATAAAATGCAAGTATTTAAGA
CTGTTGTTGCAATTTGTGTCTAACAAGCTGTAGCAGGGAAGGAGGGAGTGAGAGCTGGCAGGAG
TTACTTTCATAAATCATGAATTTATCAGCGTGGAAATAACACTGTAGACCTGTGCACTGGAACT
CTCCTGCATTATGTGTGTGACTCAAGTTCACCACTGCAGGAGAGACGGTTTTCCAGAGAGCTAG
GATGCAGCTCTTCTCACAGATCTGGGCATGAACCTTGTTAGGTATAATTTACCTGATGCTGCCT
CCATCTTGGAAGCCTGTCTGAGGTGCCAGGTGCTAAAAGAGAAATAAAGTTTGTCAACAGGCAG
ATGCAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006247196 ⟹ XP_006247258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,238,805 - 82,249,226 (-)	NCBI
mRatBN7.2	10	81,742,020 - 81,752,775 (-)	NCBI
Rnor_6.0	10	84,628,420 - 84,639,125 (-)	NCBI
Rnor_5.0	10	84,421,491 - 84,432,034 (-)	NCBI

Sequence:

show sequence

GTGCACTGGGGCGCCGGCGACTCACCCGGAAGGAGAAGCCGGAATCTGCATCTGGCTATATGGT
TCGGTGCTGGTGGTGTCGCTATAGAGAGCTGCTGCTGCTGCTCTCAGGAGCCAGCCGGGATCGT
TTGTTGGCAGTACATATTGGCTGAAGTCAGTTTTCATTTCAAGGTTTTACACATAATTGGGGTT
GAGGGGAAAGTTACCTACCTGGATTTCCCCAAGGGACGTCTGTGAAAAACTTTTGGGGGTTTTG
CTCTGCGAGAACCCAGTACGGACACGCTAACTGTGCGTCCTTCCATGTCCTCTGCTCCTCCCCA
GATGTTCTCTTCCGATGGGCTTTTGGTGTAGGATGTTGGAGAACCAAGAGCTGGAGGAGGTGAT
CACCGTGCGAGTTCAGGACCCCCGGCTGCAGAATGAGGGCTCCTGGAATTCTTATGTGGATTAT
AAGATATTCCTCCATACGAACAGCAAGGCCTTTACTGCCAAGACCTCCTGTGTGCGACGGCGCT
ACCGTGAGTTTGTGTGGCTGAGGAAGCAGCTACAGAGGAACGCGGGCTTGGTGCCTGTACCAGA
ACTTCCCGGAAAGTCCACTTTCTTTGGCAGCTCTGATGAGTTTATTGAGAAGCGACGTCAAGGT
CTCCAGCATTTCCTGGAAAAGGTCCTGCAGAGCGTGGTTCTCCTGTCCGACAGTCAGTTGCATC
TCTTCCTCCAAAGCCAGCTCTCAGTGCCCGAGATCGAAGCCTGTGTCCAGGGCCGGGGCTCCAT
GACGGTGTCTGACGCCATTCTTTCCTATGCTATGTCCAACTGTGGCTGGGCCCAGGAGGAGAGG
CAGAGCACCTCTCACCTGGCTAAAGGAGACCAACTTAACAGTTGCTGCTTTCTTCCAAGATCAG
GAAGGAGGAATTCCCCTTCACCACCTCTCAGTGAAGAGAAGGACCACGTAGAAACCTGGGCTCC
AGTAATCGACTCTGAAGGCCCATCCTTAGACAGCCCCATGCTGCCACCCAGCTCCTCGCCAGCC
TGCTGTGATCCGGCAAGACCAGATGAGGGACTCTCTGGGTCCCAGCCTGCGAGAAGGGCTGTGG
CAGGGGACCCTGCTGTGCCTTTGGATCCTGGTCAGCTAGACACAGTGTGGGGAAAGTGAGCTGT
GGCTGTTCTCTCTGTTCTCCTGGGTGGTGGAGAAGATGCCGCCAGGGTCACATTCAGGTGGGGT
TGAGGACAGGGCGGGTGTGGGGAAGTCGGGTTGAGCATCCTCCATTCAAATCTGCGCAGGTTTG
TCATGCAGAGGTTCTGGCTGCCTGCTACAGCTCCTCCATGGGAACAAACACCACACTGGTGTTT
GTGAGTTAGGTGCAGGGCCCAGAAGCTGTTGGTTTTAAATAGAACTGTATTTACTTTCCCAGGA
GGTGAGTTTCTTCAGGTGTTTGTTTAAAGAGAACTGTCACAGGCGAATGGTGAATGTTGGAGAA
CCCCTTCGTGGTAGATCTTTAGCTGCCATGTTGGACATTCCATGTTGGACATTGTCCCAACAGA
CAGTTCCTATCGTTCTATTCCCTTCTTGGCAGGCTTCCATTTTTGCTGTAGCCCCTGGAGATTT
TGGTTGTGGGAGGCTGACCTCTTGCTTGCCTCCTTGTGTGGACAAGGTAGCAAAGATGTAGTTG
CCCCCTCCTTGCCTTGTGGCCACAATGTGACTATTTGCTGGGCTTTCCAGCATCTTCCAAGACC
TCACCAGGTTAAGTGGGGCCTGAGAGGTGTAGGCAGTTAAAGCCTATCCAGGCATGGCTGGCAC
AGCCAGAGGGAAAGGAACAGGTCGGAGGCGTTGCTTGGGCAGTCTGGGCTGCCCATCTTCTGCT
TATAAAGTAGAGCTGGTGTTTCTGCAGGATTGAAGTGGGCTCCCTTTTTCAGATCCTTTTCTTC
CTCTCTTAATAACTCCATGACCCCAGAGCTTTGACTGCCAGGGCCTACGGCTGCATTCCTTGGA
AGCTGCAAGTTCAGTCCAGTGGGGCCACAGGCTTTGTTTCGGCCGGGAAGTGAGGGCTGGGGAT
GGAGGTAAGGAGACCTAAGCTGTCCTGCAGACAGTGCGGCTCCTGTCTCCTGCTGCTGAATGGG
CTCTGCAGAGAGCAGGGGCTGCTAGCTGGAGTGCTAGGGCGGGCTGAGTGCCGGGCTCACCTTG
CCACTGCTCTGCTCTTAGGTTTGTGTGTGTGTCTCACTCTGGCCATCCACTCCAGCTGTGCGGT
CCACCTCAGCTGTGGCACTACTGGCCTGCATTGTGGGACTGGCCTGGCATTTAGTTCAGAGTCG
AGGGGCTTTGGCCTGAAATAAAATGCAAGTATTTAAGACTGTTGTTGCAATTTGTGTCTAACAA
GCTGTAGCAGGGAAGGAGGGAGTGAGAGCTGGCAGGAGTTACTTTCATAAATCATGAATTTATC
AGCGTGGAAATAACACTGTAGACCTGTGCACTGGAACTCTCCTGCATTATGTGTGTGACTCAAG
TTCACCACTGCAGGAGAGACGGTTTTCCAGAGAGCTAGGATGCAGCTCTTCTCACAGATCTGGG
CATGAACCTTGTTAGGTATAATTTACCTGATGCTGCCTCCATCTTGGAAGCCTGTCTGAGGTGC
CAGGTGCTAAAAGAGAAATAAAGTTTGTCAACAGGCAGATGCAAAA

hide sequence

RefSeq Acc Id:

XM_006247198 ⟹ XP_006247260

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,238,805 - 82,249,189 (-)	NCBI
mRatBN7.2	10	81,742,020 - 81,752,736 (-)	NCBI
Rnor_6.0	10	84,628,420 - 84,639,125 (-)	NCBI
Rnor_5.0	10	84,421,491 - 84,432,034 (-)	NCBI

Sequence:

show sequence

GTGCACTGGGGCGCCGGCGACTCACCCGGAAGGAGAAGCCGGAATCTGCATCTGGCTATATGGT
TCGGTGCTGGTGGTGTCGCTATAGAGAGCTGCTGCTGCTGCTCTCAGGTTTTACACATAATTGG
GGTTGAGGGGAAAGTTACCTACCTGGATTTCCCCAAGGGACGTCTGTGAAAAACTTTTGGGGGT
TTTGCTCTGCGAGAACCCAGTACGGACACGCTAACTGTGCGTCCTTCCATGTCCTCTGCTCCTC
CCCAGATGTTCTCTTCCGATGGGCTTTTGGTGTAGGATGTTGGAGAACCAAGAGCTGGAGGAGG
TGATCACCGTGCGAGTTCAGGACCCCCGGCTGCAGAATGAGGGCTCCTGGAATTCTTATGTGGA
TTATAAGATATTCCTCCATACGAACAGCAAGGCCTTTACTGCCAAGACCTCCTGTGTGCGACGG
CGCTACCGTGAGTTTGTGTGGCTGAGGAAGCAGCTACAGAGGAACGCGGGCTTGGTGCCTGTAC
CAGAACTTCCCGGAAAGTCCACTTTCTTTGGCAGCTCTGATGAGTTTATTGAGAAGCGACGTCA
AGGTCTCCAGCATTTCCTGGAAAAGGTCCTGCAGAGCGTGGTTCTCCTGTCCGACAGTCAGTTG
CATCTCTTCCTCCAAAGCCAGCTCTCAGTGCCCGAGATCGAAGCCTGTGTCCAGGGCCGGGGCT
CCATGACGGTGTCTGACGCCATTCTTTCCTATGCTATGTCCAACTGTGGCTGGGCCCAGGAGGA
GAGGCAGAGCACCTCTCACCTGGCTAAAGGAGACCAACTTAACAGTTGCTGCTTTCTTCCAAGA
TCAGGAAGGAGGAATTCCCCTTCACCACCTCTCAGTGAAGAGAAGGACCACGTAGAAACCTGGG
CTCCAGTAATCGACTCTGAAGGCCCATCCTTAGACAGCCCCATGCTGCCACCCAGCTCCTCGCC
AGCCTGCTGTGATCCGGCAAGACCAGATGAGGGACTCTCTGGGTCCCAGCCTGCGAGAAGGGCT
GTGGCAGGGGACCCTGCTGTGCCTTTGGATCCTGGTCAGCTAGACACAGTGTGGGGAAAGTGAG
CTGTGGCTGTTCTCTCTGTTCTCCTGGGTGGTGGAGAAGATGCCGCCAGGGTCACATTCAGGTG
GGGTTGAGGACAGGGCGGGTGTGGGGAAGTCGGGTTGAGCATCCTCCATTCAAATCTGCGCAGG
TTTGTCATGCAGAGGTTCTGGCTGCCTGCTACAGCTCCTCCATGGGAACAAACACCACACTGGT
GTTTGTGAGTTAGGTGCAGGGCCCAGAAGCTGTTGGTTTTAAATAGAACTGTATTTACTTTCCC
AGGAGGTGAGTTTCTTCAGGTGTTTGTTTAAAGAGAACTGTCACAGGCGAATGGTGAATGTTGG
AGAACCCCTTCGTGGTAGATCTTTAGCTGCCATGTTGGACATTCCATGTTGGACATTGTCCCAA
CAGACAGTTCCTATCGTTCTATTCCCTTCTTGGCAGGCTTCCATTTTTGCTGTAGCCCCTGGAG
ATTTTGGTTGTGGGAGGCTGACCTCTTGCTTGCCTCCTTGTGTGGACAAGGTAGCAAAGATGTA
GTTGCCCCCTCCTTGCCTTGTGGCCACAATGTGACTATTTGCTGGGCTTTCCAGCATCTTCCAA
GACCTCACCAGGTTAAGTGGGGCCTGAGAGGTGTAGGCAGTTAAAGCCTATCCAGGCATGGCTG
GCACAGCCAGAGGGAAAGGAACAGGTCGGAGGCGTTGCTTGGGCAGTCTGGGCTGCCCATCTTC
TGCTTATAAAGTAGAGCTGGTGTTTCTGCAGGATTGAAGTGGGCTCCCTTTTTCAGATCCTTTT
CTTCCTCTCTTAATAACTCCATGACCCCAGAGCTTTGACTGCCAGGGCCTACGGCTGCATTCCT
TGGAAGCTGCAAGTTCAGTCCAGTGGGGCCACAGGCTTTGTTTCGGCCGGGAAGTGAGGGCTGG
GGATGGAGGTAAGGAGACCTAAGCTGTCCTGCAGACAGTGCGGCTCCTGTCTCCTGCTGCTGAA
TGGGCTCTGCAGAGAGCAGGGGCTGCTAGCTGGAGTGCTAGGGCGGGCTGAGTGCCGGGCTCAC
CTTGCCACTGCTCTGCTCTTAGGTTTGTGTGTGTGTCTCACTCTGGCCATCCACTCCAGCTGTG
CGGTCCACCTCAGCTGTGGCACTACTGGCCTGCATTGTGGGACTGGCCTGGCATTTAGTTCAGA
GTCGAGGGGCTTTGGCCTGAAATAAAATGCAAGTATTTAAGACTGTTGTTGCAATTTGTGTCTA
ACAAGCTGTAGCAGGGAAGGAGGGAGTGAGAGCTGGCAGGAGTTACTTTCATAAATCATGAATT
TATCAGCGTGGAAATAACACTGTAGACCTGTGCACTGGAACTCTCCTGCATTATGTGTGTGACT
CAAGTTCACCACTGCAGGAGAGACGGTTTTCCAGAGAGCTAGGATGCAGCTCTTCTCACAGATC
TGGGCATGAACCTTGTTAGGTATAATTTACCTGATGCTGCCTCCATCTTGGAAGCCTGTCTGAG
GTGCCAGGTGCTAAAAGAGAAATAAAGTTTGTCAACAGGCAGATGCAAAA

hide sequence

RefSeq Acc Id:

XM_039086077 ⟹ XP_038942005

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,241,997 - 82,249,264 (-)	NCBI
mRatBN7.2	10	81,745,539 - 81,752,778 (-)	NCBI

RefSeq Acc Id:

XM_063269114 ⟹ XP_063125184

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	82,238,805 - 82,249,092 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012012	(Get FASTA)	NCBI Sequence Viewer
	NP_001186098	(Get FASTA)	NCBI Sequence Viewer
	XP_006247258	(Get FASTA)	NCBI Sequence Viewer
	XP_006247260	(Get FASTA)	NCBI Sequence Viewer
	XP_038942005	(Get FASTA)	NCBI Sequence Viewer
	XP_063125184	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86543	(Get FASTA)	NCBI Sequence Viewer
	EDM05815	(Get FASTA)	NCBI Sequence Viewer
	EDM05816	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011474.4
	ENSRNOP00000070277.2
	ENSRNOP00000070897.2
	ENSRNOP00000077201.1
	ENSRNOP00000092915.1

RefSeq Acc Id:

NP_001012012 ⟸ NM_001012012

- UniProtKB:

D4A3W4 (UniProtKB/TrEMBL), A6HIG1 (UniProtKB/TrEMBL), A0A8I5Y9D6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGFWCRMLENQELEEVITVRVQDPRLQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFV
WLRKQLQRNAGLVPVPELPGKSTFFGSSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQS
QLSVPEIEACVQGRGSMTVSDAILSYAMSNCGWAQEERQSTSHLAKGDQLNSCCFLPRSGRRNS
PSPPLSEEKDHVETWAPVIDSEGPSLDSPMLPPSSSPACCDPARPDEGLSGSQPARRAVAGDPA
VPLDPGQLDTVWGK

hide sequence

RefSeq Acc Id:

NP_001186098 ⟸ NM_001199169

- UniProtKB:

D4A3W4 (UniProtKB/TrEMBL), A6HIG1 (UniProtKB/TrEMBL), A0A8I5Y9D6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGFWCRMLENQELEEVITVRVQDPRLQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFV
WLRKQLQRNAGLVPVPELPGKSTFFGSSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQS
QLSVPEIEACVQGRGSMTVSDAILSYAMSNCGWAQEERQSTSHLAKGDQLNSCCFLPRSGRRNS
PSPPLSEEKDHVETWAPVIDSEGPSLDSPMLPPSSSPACCDPARPDEGLSGSQPARRAVAGDPA
VPLDPGQLDTVWGK

hide sequence

RefSeq Acc Id:	XP_006247258 ⟸ XM_006247196
- Peptide Label:	isoform X1
- UniProtKB:	D4A3W4 (UniProtKB/TrEMBL), A6HIG1 (UniProtKB/TrEMBL), A0A8I5Y9D6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGFWCRMLENQELEEVITVRVQDPRLQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFV WLRKQLQRNAGLVPVPELPGKSTFFGSSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQS QLSVPEIEACVQGRGSMTVSDAILSYAMSNCGWAQEERQSTSHLAKGDQLNSCCFLPRSGRRNS PSPPLSEEKDHVETWAPVIDSEGPSLDSPMLPPSSSPACCDPARPDEGLSGSQPARRAVAGDPA VPLDPGQLDTVWGK hide sequence

RefSeq Acc Id:	XP_006247260 ⟸ XM_006247198
- Peptide Label:	isoform X1
- UniProtKB:	D4A3W4 (UniProtKB/TrEMBL), A6HIG1 (UniProtKB/TrEMBL), A0A8I5Y9D6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGFWCRMLENQELEEVITVRVQDPRLQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFV WLRKQLQRNAGLVPVPELPGKSTFFGSSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQS QLSVPEIEACVQGRGSMTVSDAILSYAMSNCGWAQEERQSTSHLAKGDQLNSCCFLPRSGRRNS PSPPLSEEKDHVETWAPVIDSEGPSLDSPMLPPSSSPACCDPARPDEGLSGSQPARRAVAGDPA VPLDPGQLDTVWGK hide sequence

Ensembl Acc Id:

ENSRNOP00000070277 ⟸ ENSRNOT00000089146

Ensembl Acc Id:

ENSRNOP00000011474 ⟸ ENSRNOT00000011474

Ensembl Acc Id:

ENSRNOP00000070897 ⟸ ENSRNOT00000081348

RefSeq Acc Id:	XP_038942005 ⟸ XM_039086077
- Peptide Label:	isoform X2
- UniProtKB:	Q5RJQ6 (UniProtKB/TrEMBL), A0A0G2JXH9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000092915 ⟸ ENSRNOT00000114616

Ensembl Acc Id:

ENSRNOP00000077201 ⟸ ENSRNOT00000096544

RefSeq Acc Id:	XP_063125184 ⟸ XM_063269114
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5Y9D6 (UniProtKB/TrEMBL), A6HIG1 (UniProtKB/TrEMBL), D4A3W4 (UniProtKB/TrEMBL)

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JXH9-F1-model_v2	AlphaFold	A0A0G2JXH9	1-299	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697633

Promoter ID:

EPDNEW_R8158

Type:

initiation region

Name:

Snx11_1

Description:

sorting nexin 11

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	84,639,076 - 84,639,136	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307319	AgrOrtholog
BioCyc Gene	G2FUF-23481	BioCyc
Ensembl Genes	ENSRNOG00000008642	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011474.7	UniProtKB/TrEMBL
	ENSRNOT00000081348.2	UniProtKB/TrEMBL
	ENSRNOT00000089146.2	UniProtKB/TrEMBL
	ENSRNOT00000096544.1	UniProtKB/TrEMBL
	ENSRNOT00000114616.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1520.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7132863	IMAGE-MGC_LOAD
InterPro	IPR001683	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	SNX10/11	UniProtKB/TrEMBL
KEGG Report	rno:303493	UniProtKB/TrEMBL
MGC_CLONE	MGC:105892	IMAGE-MGC_LOAD
NCBI Gene	303493	ENTREZGENE
PANTHER	PTHR46209	UniProtKB/TrEMBL
	SORTING NEXIN-11	UniProtKB/TrEMBL
Pfam	PF00787	UniProtKB/TrEMBL
PhenoGen	Snx11	PhenoGen
PROSITE	PS50195	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008642	RatGTEx
SMART	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	64268	UniProtKB/TrEMBL
UniProt	A0A0G2JXH9	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2JZ37_RAT	UniProtKB/TrEMBL
	A0A8I5Y9D6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AWA3_RAT	UniProtKB/TrEMBL
	A6HIG1	ENTREZGENE, UniProtKB/TrEMBL
	D4A3W4	ENTREZGENE, UniProtKB/TrEMBL
	Q5RJQ6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Snx11	sorting nexin 11	Snx11_predicted	sorting nexin 11 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Snx11_predicted	sorting nexin 11 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar