Snx11 (sorting nexin 11) - Rat Genome Database

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Gene: Snx11 (sorting nexin 11) Mus musculus
Analyze
Symbol: Snx11
Name: sorting nexin 11
RGD ID: 1552665
MGI Page MGI
Description: Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to be involved in vesicle organization. Predicted to be located in cytoplasm and plasma membrane. Predicted to be active in endosome. Is expressed in central nervous system and olfactory epithelium. Orthologous to human SNX11 (sorting nexin 11).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933439F10Rik; A930041K09Rik; AI117694; sorting nexin-11
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,658,372 - 96,668,538 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1196,658,381 - 96,668,385 (-)EnsemblGRCm39 Ensembl
GRCm381196,767,546 - 96,777,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,767,555 - 96,777,559 (-)EnsemblGRCm38mm10GRCm38
MGSCv371196,628,863 - 96,638,869 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,583,645 - 96,593,621 (-)NCBIMGSCv36mm8
Celera11106,414,426 - 106,424,430 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1160.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO,ISS)
endosome  (IBA,ISO,ISS)
plasma membrane  (ISO,ISS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16919269   PMID:18799693   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:25216639   PMID:31730264  


Genomics

Comparative Map Data
Snx11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,658,372 - 96,668,538 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1196,658,381 - 96,668,385 (-)EnsemblGRCm39 Ensembl
GRCm381196,767,546 - 96,777,712 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,767,555 - 96,777,559 (-)EnsemblGRCm38mm10GRCm38
MGSCv371196,628,863 - 96,638,869 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,583,645 - 96,593,621 (-)NCBIMGSCv36mm8
Celera11106,414,426 - 106,424,430 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1160.1NCBI
SNX11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381748,107,523 - 48,123,601 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1748,103,357 - 48,123,601 (+)EnsemblGRCh38hg38GRCh38
GRCh371746,185,128 - 46,200,963 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361743,539,919 - 43,555,104 (+)NCBINCBI36Build 36hg18NCBI36
Build 341743,539,918 - 43,555,104NCBI
Celera1742,639,285 - 42,654,466 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1741,554,691 - 41,569,833 (+)NCBIHuRef
CHM1_11746,249,918 - 46,265,134 (+)NCBICHM1_1
T2T-CHM13v2.01748,970,884 - 48,986,962 (+)NCBIT2T-CHM13v2.0
Snx11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81082,238,475 - 82,249,264 (-)NCBIGRCr8
mRatBN7.21081,742,020 - 81,752,778 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1081,742,024 - 81,752,712 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1086,690,008 - 86,700,458 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01086,188,062 - 86,198,512 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01081,580,662 - 81,591,112 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01084,628,420 - 84,639,125 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,628,424 - 84,639,111 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,421,491 - 84,432,034 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41085,516,530 - 85,526,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11085,530,903 - 85,541,265 (-)NCBI
Celera1080,504,024 - 80,513,792 (-)NCBICelera
Cytogenetic Map10q31NCBI
Snx11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,051,169 - 13,056,628 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,051,649 - 13,060,479 (-)NCBIChiLan1.0ChiLan1.0
SNX11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21916,978,777 - 16,994,004 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11718,944,407 - 18,959,635 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0179,412,559 - 9,428,114 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,595,666 - 9,610,663 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,595,666 - 9,610,592 (-)Ensemblpanpan1.1panPan2
SNX11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1924,393,150 - 24,412,850 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl924,393,227 - 24,401,851 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha923,859,366 - 23,879,891 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0925,187,359 - 25,207,891 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl925,187,400 - 25,197,077 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1923,956,905 - 23,977,639 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0924,217,169 - 24,237,712 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0924,344,598 - 24,365,117 (+)NCBIUU_Cfam_GSD_1.0
Snx11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560223,839,492 - 23,850,159 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649013,224,053 - 13,235,723 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649013,224,977 - 13,235,723 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1224,351,390 - 24,360,917 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11224,351,280 - 24,360,921 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,209,912 - 24,219,518 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11668,504,236 - 68,527,676 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1668,504,640 - 68,529,030 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607739,564,977 - 39,579,973 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247954,714,350 - 4,718,526 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247954,710,750 - 4,718,287 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snx11
410 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1703
Count of miRNA genes:603
Interacting mature miRNAs:753
Transcripts:ENSMUST00000021246, ENSMUST00000107661, ENSMUST00000125025, ENSMUST00000127375, ENSMUST00000132354, ENSMUST00000136799
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14700796Syncq9_msynovial calcification QTL 9 (mouse)119593782696992826Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118869958899081597Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
13524529Bodwtq10_mbody wweight QTL 10 (mouse)119067951297699512Mouse

Markers in Region
AI117694  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381196,767,680 - 96,767,786UniSTSGRCm38
MGSCv371196,628,994 - 96,629,100UniSTSGRCm37
Celera11106,414,557 - 106,414,663UniSTS
Cytogenetic Map11DUniSTS
Whitehead/MRC_RH111271.5UniSTS
MARC_23527-23528:1027525177:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381196,772,805 - 96,773,185UniSTSGRCm38
MGSCv371196,634,119 - 96,634,499UniSTSGRCm37
Celera11106,419,682 - 106,420,062UniSTS
Cytogenetic Map11DUniSTS
SNX11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381196,770,697 - 96,771,079UniSTSGRCm38
MGSCv371196,632,011 - 96,632,393UniSTSGRCm37
Celera11106,417,574 - 106,417,956UniSTS
Cytogenetic Map11DUniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000021246   ⟹   ENSMUSP00000021246
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,658,381 - 96,668,357 (-)Ensembl
GRCm38.p6 Ensembl1196,767,555 - 96,777,531 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107661   ⟹   ENSMUSP00000103288
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,658,703 - 96,668,385 (-)Ensembl
GRCm38.p6 Ensembl1196,767,877 - 96,777,559 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,660,924 - 96,661,876 (-)Ensembl
GRCm38.p6 Ensembl1196,770,098 - 96,771,050 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127375   ⟹   ENSMUSP00000115789
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,660,717 - 96,668,318 (-)Ensembl
GRCm38.p6 Ensembl1196,769,891 - 96,777,492 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132354
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,663,363 - 96,665,467 (-)Ensembl
GRCm38.p6 Ensembl1196,772,537 - 96,774,641 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,667,126 - 96,668,346 (-)Ensembl
GRCm38.p6 Ensembl1196,776,300 - 96,777,520 (-)Ensembl
RefSeq Acc Id: NM_001163389   ⟹   NP_001156861
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,658,375 - 96,668,381 (-)NCBI
GRCm381196,767,549 - 96,777,555 (-)NCBI
MGSCv371196,628,863 - 96,638,869 (-)RGD
Celera11106,414,426 - 106,424,430 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028965   ⟹   NP_083241
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,658,375 - 96,668,381 (-)NCBI
GRCm381196,767,549 - 96,777,555 (-)NCBI
MGSCv371196,628,863 - 96,638,869 (-)RGD
Celera11106,414,426 - 106,424,430 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534375   ⟹   XP_006534438
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,658,372 - 96,668,538 (-)NCBI
GRCm381196,767,546 - 96,777,712 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249289   ⟹   XP_011247591
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,658,372 - 96,668,538 (-)NCBI
GRCm381196,767,546 - 96,777,712 (-)NCBI
Sequence:
RefSeq Acc Id: NP_083241   ⟸   NM_028965
- UniProtKB: Q3V3A6 (UniProtKB/Swiss-Prot),   Q91WL6 (UniProtKB/Swiss-Prot),   Q9CUA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001156861   ⟸   NM_001163389
- UniProtKB: Q3V3A6 (UniProtKB/Swiss-Prot),   Q91WL6 (UniProtKB/Swiss-Prot),   Q9CUA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534438   ⟸   XM_006534375
- Peptide Label: isoform X1
- UniProtKB: Q3V3A6 (UniProtKB/Swiss-Prot),   Q91WL6 (UniProtKB/Swiss-Prot),   Q9CUA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247591   ⟸   XM_011249289
- Peptide Label: isoform X1
- UniProtKB: Q3V3A6 (UniProtKB/Swiss-Prot),   Q91WL6 (UniProtKB/Swiss-Prot),   Q9CUA3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000103288   ⟸   ENSMUST00000107661
Ensembl Acc Id: ENSMUSP00000115789   ⟸   ENSMUST00000127375
Ensembl Acc Id: ENSMUSP00000021246   ⟸   ENSMUST00000021246
Protein Domains
PX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91WL6-F1-model_v2 AlphaFold Q91WL6 1-271 view protein structure

Promoters
RGD ID:6822183
Promoter ID:MM_KWN:9422
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000107660,   NM_028965,   OTTMUST00000003961,   OTTMUST00000003963,   OTTMUST00000003964
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361196,638,711 - 96,639,262 (-)MPROMDB
RGD ID:8676352
Promoter ID:EPDNEW_M16207
Type:initiation region
Name:Snx11_1
Description:Mus musculus sorting nexin 11 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381196,777,508 - 96,777,568EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921729 AgrOrtholog
Ensembl Genes ENSMUSG00000020876 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021246 ENTREZGENE
  ENSMUST00000021246.9 UniProtKB/Swiss-Prot
  ENSMUST00000107661 ENTREZGENE
  ENSMUST00000107661.10 UniProtKB/Swiss-Prot
  ENSMUST00000127375.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1520.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Phox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNX10/11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74479 UniProtKB/Swiss-Prot
MGD MGI:1921729 ENTREZGENE
NCBI Gene 74479 ENTREZGENE
PANTHER PTHR46209 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SORTING NEXIN-11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snx11 PhenoGen
PROSITE PS50195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00312 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF64268 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A880_MOUSE UniProtKB/TrEMBL
  Q3V3A6 ENTREZGENE
  Q91WL6 ENTREZGENE
  Q9CUA3 ENTREZGENE, UniProtKB/TrEMBL
  SNX11_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3V3A6 UniProtKB/Swiss-Prot