Syncq9_m QTL Report (Mus musculus) - Rat Genome Database

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QTL Registration

QTL: Syncq9_m (synovial calcification QTL 9 (mouse)) Mus musculus

Symbol: Syncq9_m
Name: synovial calcification QTL 9 (mouse)
RGD ID: 14700796
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm391195,937,826 - 96,992,826MOUSEQTLGRCm39
GRCm381196,047,000 - 97,102,000MOUSEQTLGRCm38
cM Map11syntenicMOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
Additional References at PubMed
PMID:25989359  


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1621568Snf8SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)119592571195938256Mouse
1318063Ube2zubiquitin-conjugating enzyme E2Z119593825795956190Mouse
62226Atp5mc1ATP synthase membrane subunit c locus 1119596361995966520Mouse
401709565LOC131379289STARR-seq mESC enhancer starr_30532119596591795967712Mouse
15001539Gm22423predicted gene, 22423119597449995974682Mouse
1623116Calcoco2calcium binding and coiled-coil domain 2119599019596015362Mouse
401717324LOC131379290STARR-seq mESC enhancer starr_30533119600427996005905Mouse
1323632Ttll6tubulin tyrosine ligase-like family, member 6119601528396057008Mouse
401833437LOC132442111STARR-positive B cell enhancer mm9_chr11:95988247-95988548119601775996018060Mouse
401705778LOC131379291STARR-seq mESC enhancer starr_30537119601851196019351Mouse
401709897LOC131379292STARR-seq mESC enhancer starr_30538119602084096022177Mouse
401715099LOC131379293STARR-seq mESC enhancer starr_30539119602498196026821Mouse
9622840Gm30084predicted gene, 30084119602718396032001Mouse
401700990LOC131379294STARR-seq mESC enhancer starr_30541119607913996082066Mouse
1319270Hoxb13homeobox B13119608514296087436Mouse
9616281Gm30134predicted gene, 30134119608968996094452Mouse
401714326LOC131379295STARR-seq mESC enhancer starr_30542119609016596091584Mouse
2295580Gm11538predicted gene 11538119609428096096306Mouse
2295619Gm11539predicted gene 11539119613942496140054Mouse
1619035Gm53predicted gene 53119614248696155310Mouse
401701272LOC131379296STARR-seq mESC enhancer starr_30544119614287196144460Mouse
15019579Gm51876predicted gene, 51876119615566796159877Mouse
1608300Mir196a-1microRNA 196a-1119615599096156091Mouse
1314614Hoxb9homeobox B9119616215696167421Mouse
1557995Hoxb8homeobox B8119617022796176151Mouse
1557126Hoxb7homeobox B7119617643196180989Mouse
401715622LOC131379297STARR-seq mESC enhancer starr_30545119618160396183193Mouse
1607380Hoxb5oshomeobox B5 and homeobox B6, opposite strand119618186396197736Mouse
1558163Hoxb6homeobox B6119618364796192395Mouse
1556931Hoxb5homeobox B5119619433896196947Mouse
1321881Hoxb3homeobox B3119619792796238756Mouse
155888540HoxblincHoxb locus associated lincRNA119620644496209025Mouse
1608163Mir10amicroRNA 10a119620799196208100Mouse
1557963Hoxb4homeobox B4119620909396212464Mouse
401847917Gm11536predicted gene 11536119622625296233049Mouse
3799608Hoxb3oshomeobox B3 and homeobox B2, opposite strand119623386096244220Mouse
1320420Hoxb2homeobox B2119624245896244846Mouse
401717412LOC131379298STARR-seq mESC enhancer starr_30549119624522896246257Mouse
1321120Hoxb1homeobox B1119625654796259082Mouse
39130388LOC107305679origin of replication 3' to Hoxb1119625940296260280Mouse
401701053LOC131379299STARR-seq mESC enhancer starr_30551119627002996270653Mouse
2295076Gm11531predicted gene 11531119628290096283525Mouse
401701303LOC131379300STARR-seq mESC enhancer starr_30552119628959896291551Mouse
1624575Gm11529predicted gene 11529119633772596355373Mouse
1620709Skap1src family associated phosphoprotein 1119635539696650448Mouse
10017962Gm38960predicted gene, 38960119638319396430922Mouse
401713294LOC131379301STARR-seq mESC enhancer starr_30554119641577696417506Mouse
401713049LOC131379302STARR-seq mESC enhancer starr_30556119645148496453634Mouse
401714118LOC131379303STARR-seq mESC enhancer starr_30559119658727796588477Mouse
401710997LOC131379304STARR-seq mESC enhancer starr_30560119660285096606078Mouse
1552665Snx11sorting nexin 11119665837296668538Mouse
401834585LOC132442112STARR-positive B cell enhancer ABC_E1146119666840496668705Mouse
401706627LOC131379305STARR-seq mESC enhancer starr_30562119667059796672401Mouse
1321783Cbx1chromobox 1119667950696699808Mouse
2295210Gm11517predicted gene 11517119668615896688982Mouse
401702072LOC131379306STARR-seq mESC enhancer starr_30564119669616596697833Mouse
1323706Nfe2l1nuclear factor, erythroid derived 2,-like 1119670823996720810Mouse
401704733LOC131379307STARR-seq mESC enhancer starr_30565119671281796714432Mouse
401841907LOC132442113STARR-positive B cell enhancer ABC_E9144119671490596715205Mouse
401839076LOC132442114STARR-positive B cell enhancer ABC_E9371119672014096720440Mouse
401836974LOC132442115STARR-positive B cell enhancer ABC_E201119672082796721128Mouse
1315852Copz2coatomer protein complex, subunit zeta 2119674070296752029Mouse
1608321Mir152microRNA 152119674121996741291Mouse
401838491LOC132442116STARR-positive B cell enhancer ABC_E2366119675277096753071Mouse
2294983Gm11523predicted gene 11523119675326896771449Mouse
2312142Gm11524predicted gene 11524119676097996761851Mouse
39131266LOC110120515VISTA enhancer mm1299119676308296765280Mouse
39129729LOC109280093VISTA enhancers mm876 and mm999119677414496778991Mouse
10013965Gm38961predicted gene, 38961119678332796793360Mouse
401709778LOC131379308STARR-seq mESC enhancer starr_30571119678761096791775Mouse
39130002LOC114827953VISTA enhancer mm1675119679253996795497Mouse
1616671Cdk5rap3CDK5 regulatory subunit associated protein 3119679825196807359Mouse
401832285LOC132442117STARR-positive B cell enhancer ABC_E202119680728596807586Mouse
5142157Gm11525predicted gene 11525119680976196817893Mouse
1623814Prr15lproline rich 15-like119681698796826474Mouse
401711964LOC131379309STARR-seq mESC enhancer starr_30572119682527296826521Mouse
733973Pnpopyridoxine 5'-phosphate oxidase119682864296834845Mouse
401834207LOC132442118STARR-positive B cell enhancer ABC_E2367119683478296835083Mouse
1617237D030028A08RikRIKEN cDNA D030028A08 gene119683497296855886Mouse
1558393Sp2Sp2 transcription factor119684415896873785Mouse
401834590LOC132442119STARR-positive B cell enhancer ABC_E11488119685762996857929Mouse
401839652LOC132442120STARR-positive B cell enhancer ABC_E20119686846596868766Mouse
401705110LOC131379310STARR-seq mESC enhancer starr_30576119686999096871934Mouse
15021307Gm51916predicted gene, 51916119687822796879127Mouse
163711082LOC128926748CapStarr-seq enhancer MGSCv37_chr11:96849306-96849459119687881896878971Mouse
401836158LOC132442121STARR-positive B cell enhancer ABC_E1429119688729696887597Mouse
1556994Sp6trans-acting transcription factor 6119690439596915565Mouse
10411934Gm11532predicted gene 11532119691133496917244Mouse
401701760LOC131379311STARR-seq mESC enhancer starr_30578119691222196918376Mouse
1317111Scrn2secernin 2119692071796924786Mouse
1553771Lrrc46leucine rich repeat containing 46119692542896932195Mouse
9644424Gm11533predicted gene 11533119692746196928411Mouse
401832380LOC132442122STARR-positive B cell enhancer ABC_E909119693219296932493Mouse
1315062Mrpl10mitochondrial ribosomal protein L10119693240896940039Mouse
401838927LOC132442123STARR-positive B cell enhancer ABC_E8445119694132996941630Mouse
1319317Osbpl7oxysterol binding protein-like 7119694145996959730Mouse
15019440Gm51917predicted gene, 51917119694563196949738Mouse
9670869Mir8103microRNA 8103119695459496954700Mouse
401707268LOC131379312STARR-seq mESC enhancer starr_30581119697551496980164Mouse
1317939Tbx21T-box 21119698883397006157Mouse

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14700796Syncq9_msynovial calcification QTL 9 (mouse)119593782696992826Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
4141086Mvwf_mmodifier of von Willebrand factor (mouse)Not determined9545964496176602Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
1301153Estq3_mestradiol regulated response QTL 3 (mouse)Not determined119689769399327028Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
15092049Wsigrme3_mweek six growth rate, maternal effect 3 (mouse)118487732496629512Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
15092057Lgrme3_mlate growth rate, maternal effect 3 (mouse)118487732496629512Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118869958899081597Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300847Par1_mpulmonary adenoma resistance 1 (mouse)Not determined119406377996167421Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
13524529Bodwtq10_mbody wweight QTL 10 (mouse)119067951297699512Mouse


Additional Information

Database Acc Id Source(s)
MGD MGI:6342100 MouseQtl