Atp5mc1 (ATP synthase membrane subunit c locus 1) - Rat Genome Database

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Gene: Atp5mc1 (ATP synthase membrane subunit c locus 1) Mus musculus
Analyze
Symbol: Atp5mc1
Name: ATP synthase membrane subunit c locus 1
RGD ID: 62226
MGI Page MGI
Description: Predicted to enable ligand-gated channel activity. Predicted to be involved in proton motive force-driven ATP synthesis. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; genitourinary system; hemolymphoid system; liver; and nervous system. Orthologous to human ATP5MC1 (ATP synthase membrane subunit c locus 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATP synthase F(0) complex subunit C1, mitochondrial; ATP synthase lipid-binding protein; ATP synthase lipid-binding protein, mitochondrial; ATP synthase proteolipid P1; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9); ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9); Atp5g1; ATPase protein 9; ATPase subunit c
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm10039   Gm12337   Gm1335   Gm4479   Gm4660   Gm6612  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391195,963,619 - 95,966,520 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1195,959,678 - 95,966,496 (-)EnsemblGRCm39 Ensembl
GRCm381196,072,793 - 96,075,694 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,068,852 - 96,075,670 (-)EnsemblGRCm38mm10GRCm38
MGSCv371195,934,107 - 95,937,008 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,884,942 - 95,891,127 (-)NCBIMGSCv36mm8
Celera11105,723,080 - 105,725,981 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-nitrofluorene  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP)
alpha-Zearalanol  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP)
atrazine  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
celastrol  (EXP)
CGP 52608  (ISO)
chlorpyrifos  (EXP,ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
diarsenic trioxide  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
diquat  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fipronil  (ISO)
flutamide  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glyphosate  (ISO)
imidacloprid  (ISO)
isoniazide  (EXP)
isoprenaline  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
maneb  (EXP)
methimazole  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
N-nitrosodimethylamine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
nitrofen  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
PCB138  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
PhIP  (ISO)
piroxicam  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
resveratrol  (EXP,ISO)
SB 431542  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (EXP)
sunitinib  (ISO)
tamoxifen  (EXP,ISO)
tetrachloroethene  (EXP)
thapsigargin  (ISO)
thiabendazole  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP)
tungsten  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Structural analysis and chromosomal localization of the mouse Psmb5 gene coding for the constitutively expressed beta-type proteasome subunit. Kohda K, etal., Immunogenetics 1997;47(1):77-87.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:3503701   PMID:7535541   PMID:8305451   PMID:9218537   PMID:9507200   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12865426   PMID:14610273  
PMID:14651853   PMID:14681479   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16930510   PMID:17276355   PMID:17666453   PMID:18287559   PMID:18614015   PMID:18799693   PMID:19334288  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:32248761   PMID:32554809   PMID:33663221   PMID:38355793  


Genomics

Comparative Map Data
Atp5mc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391195,963,619 - 95,966,520 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1195,959,678 - 95,966,496 (-)EnsemblGRCm39 Ensembl
GRCm381196,072,793 - 96,075,694 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,068,852 - 96,075,670 (-)EnsemblGRCm38mm10GRCm38
MGSCv371195,934,107 - 95,937,008 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,884,942 - 95,891,127 (-)NCBIMGSCv36mm8
Celera11105,723,080 - 105,725,981 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.33NCBI
ATP5MC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381748,892,787 - 48,895,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1748,892,765 - 48,895,871 (+)EnsemblGRCh38hg38GRCh38
GRCh371746,970,149 - 46,973,233 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361744,325,147 - 44,328,232 (+)NCBINCBI36Build 36hg18NCBI36
Build 341744,325,146 - 44,328,229NCBI
Celera1743,424,432 - 43,427,516 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1742,337,759 - 42,340,843 (+)NCBIHuRef
CHM1_11747,036,030 - 47,039,110 (+)NCBICHM1_1
T2T-CHM13v2.01749,756,527 - 49,759,610 (+)NCBIT2T-CHM13v2.0
Atp5mc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81081,520,762 - 81,523,735 (-)NCBIGRCr8
mRatBN7.21081,024,056 - 81,026,780 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1081,023,925 - 81,027,124 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1081,024,064 - 81,026,284 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1085,972,277 - 85,974,869 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01085,470,315 - 85,472,907 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01080,863,050 - 80,865,635 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01083,895,941 - 83,898,640 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1083,895,947 - 83,898,527 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01083,700,811 - 83,703,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41084,788,650 - 84,791,230 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11084,803,019 - 84,805,600 (-)NCBI
Celera1079,791,879 - 79,794,459 (-)NCBICelera
Cytogenetic Map10q26NCBI
Atp5mc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545112,426,309 - 12,429,395 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545112,426,309 - 12,429,460 (-)NCBIChiLan1.0ChiLan1.0
ATP5MC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21916,207,230 - 16,210,352 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11718,172,819 - 18,175,941 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0178,641,273 - 8,644,395 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1178,828,117 - 8,831,213 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl178,828,117 - 8,831,190 (-)Ensemblpanpan1.1panPan2
ATP5MC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1925,123,194 - 25,125,959 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl925,123,241 - 25,127,909 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha924,584,393 - 24,587,136 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0925,918,467 - 25,921,213 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl925,918,581 - 25,921,227 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1924,686,561 - 24,689,301 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0924,944,602 - 24,947,346 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0925,073,511 - 25,076,255 (+)NCBIUU_Cfam_GSD_1.0
Atp5mc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,523,210 - 24,526,094 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649012,548,813 - 12,552,278 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649012,549,045 - 12,551,895 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5MC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,110,528 - 25,113,478 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,110,540 - 25,113,481 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,066,551 - 25,069,489 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5MC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11669,307,094 - 69,312,257 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1669,307,175 - 69,312,254 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607740,408,597 - 40,411,665 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5mc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247955,297,161 - 5,301,746 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247955,297,475 - 5,300,526 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp5mc1
99 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4270
Count of miRNA genes:785
Interacting mature miRNAs:1050
Transcripts:ENSMUST00000090541, ENSMUST00000107684, ENSMUST00000107686, ENSMUST00000178611
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14700796Syncq9_msynovial calcification QTL 9 (mouse)119593782696992826Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
4141086Mvwf_mmodifier of von Willebrand factor (mouse)Not determined9545964496176602Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
15092049Wsigrme3_mweek six growth rate, maternal effect 3 (mouse)118487732496629512Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
15092057Lgrme3_mlate growth rate, maternal effect 3 (mouse)118487732496629512Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118869958899081597Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300847Par1_mpulmonary adenoma resistance 1 (mouse)Not determined119406377996167421Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
13524529Bodwtq10_mbody wweight QTL 10 (mouse)119067951297699512Mouse

Markers in Region
SSO4H11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381196,073,108 - 96,073,594UniSTSGRCm38
GRCm3811100,361,720 - 100,361,902UniSTSGRCm38
MGSCv371195,934,422 - 95,934,908UniSTSGRCm37
MGSCv3711100,223,034 - 100,223,216UniSTSGRCm37
Celera11110,979,115 - 110,979,297UniSTS
Celera11105,723,395 - 105,723,881UniSTS
Cytogenetic Map11DUniSTS
Atp5g1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv3711100,223,162 - 100,223,406UniSTSGRCm37
MGSCv371580,782,969 - 80,783,200UniSTSGRCm37
Celera1583,073,028 - 83,073,259UniSTS
Celera11110,979,243 - 110,979,487UniSTS
Cytogenetic Map11DUniSTS
cM Map11 UniSTS
cM Map1422.5UniSTS
Atp6n1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11DUniSTS
cM Map1155.8UniSTS
Atp5g1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381580,952,539 - 80,952,770UniSTSGRCm38
GRCm3811100,361,848 - 100,362,092UniSTSGRCm38
MGSCv371580,782,969 - 80,783,200UniSTSGRCm37
MGSCv3711100,223,162 - 100,223,406UniSTSGRCm37
Celera1583,073,028 - 83,073,259UniSTS
Celera11110,979,243 - 110,979,487UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map11DUniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001161419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK008191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY276643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY297329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF749235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L19737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000090541   ⟹   ENSMUSP00000088029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1195,959,678 - 95,966,496 (-)Ensembl
GRCm38.p6 Ensembl1196,068,852 - 96,075,670 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107684   ⟹   ENSMUSP00000103312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1195,963,816 - 95,966,445 (-)Ensembl
GRCm38.p6 Ensembl1196,072,990 - 96,075,619 (-)Ensembl
Ensembl Acc Id: ENSMUST00000107686   ⟹   ENSMUSP00000103314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1195,963,813 - 95,966,407 (-)Ensembl
GRCm38.p6 Ensembl1196,072,987 - 96,075,581 (-)Ensembl
Ensembl Acc Id: ENSMUST00000178611   ⟹   ENSMUSP00000137633
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1195,959,693 - 95,965,863 (-)Ensembl
GRCm38.p6 Ensembl1196,068,867 - 96,075,037 (-)Ensembl
RefSeq Acc Id: NM_001161419   ⟹   NP_001154891
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391195,963,619 - 95,966,457 (-)NCBI
GRCm381196,072,793 - 96,075,631 (-)NCBI
MGSCv371195,934,107 - 95,937,008 (-)RGD
Celera11105,723,080 - 105,725,981 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001417327   ⟹   NP_001404256
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391195,963,812 - 95,966,450 (-)NCBI
RefSeq Acc Id: NM_007506   ⟹   NP_031532
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391195,963,619 - 95,966,520 (-)NCBI
GRCm381196,072,793 - 96,075,694 (-)ENTREZGENE
MGSCv371195,934,107 - 95,937,008 (-)RGD
Celera11105,723,080 - 105,725,981 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031532   ⟸   NM_007506
- UniProtKB: Q3TIE9 (UniProtKB/Swiss-Prot),   Q9CR84 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001154891   ⟸   NM_001161419
- UniProtKB: Q3TIE9 (UniProtKB/Swiss-Prot),   Q9CR84 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000137633   ⟸   ENSMUST00000178611
Ensembl Acc Id: ENSMUSP00000088029   ⟸   ENSMUST00000090541
Ensembl Acc Id: ENSMUSP00000103312   ⟸   ENSMUST00000107684
Ensembl Acc Id: ENSMUSP00000103314   ⟸   ENSMUST00000107686
RefSeq Acc Id: NP_001404256   ⟸   NM_001417327
- UniProtKB: Q9CR84 (UniProtKB/Swiss-Prot),   Q3TIE9 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CR84-F1-model_v2 AlphaFold Q9CR84 1-136 view protein structure

Promoters
RGD ID:6846815
Promoter ID:MM_ACW:8694
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ATP5G1.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361195,934,716 - 95,935,216 (-)MPROMDB
RGD ID:6820450
Promoter ID:MM_KWN:9376
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000090541,   ENSMUST00000107686,   NM_001112664_GM10039,   UC007LBE.1,   UC007LBF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361195,936,391 - 95,937,517 (-)MPROMDB
RGD ID:8676310
Promoter ID:EPDNEW_M16186
Type:initiation region
Name:Atp5g1_1
Description:Mus musculus ATP synthase, H+ transporting, mitochondrial F0complex, subunit C1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381196,075,619 - 96,075,679EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107653 AgrOrtholog
Ensembl Genes ENSMUSG00000006057 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000090541 ENTREZGENE
  ENSMUST00000090541.12 UniProtKB/Swiss-Prot
  ENSMUST00000107684 ENTREZGENE
  ENSMUST00000107684.2 UniProtKB/Swiss-Prot
  ENSMUST00000107686 ENTREZGENE
  ENSMUST00000107686.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.20.10 UniProtKB/Swiss-Prot
InterPro ATP_synth_F0_csu UniProtKB/Swiss-Prot
  ATP_synth_F0_csu_DDCD_BS UniProtKB/Swiss-Prot
  ATP_synth_F0_csu_sf UniProtKB/Swiss-Prot
  ATPase_proteolipid_c-like_dom UniProtKB/Swiss-Prot
  F/V-ATP_Csub_sf UniProtKB/Swiss-Prot
KEGG Report mmu:11951 UniProtKB/Swiss-Prot
MGD MGI:107653 ENTREZGENE
NCBI Gene 11951 ENTREZGENE
PANTHER ATP SYNTHASE F(0) COMPLEX SUBUNIT C3, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR10031 UniProtKB/Swiss-Prot
Pfam ATP-synt_C UniProtKB/Swiss-Prot
PhenoGen Atp5mc1 PhenoGen
PRINTS ATPASEC UniProtKB/Swiss-Prot
PROSITE ATPASE_C UniProtKB/Swiss-Prot
Superfamily-SCOP SSF81333 UniProtKB/Swiss-Prot
UniProt AT5G1_MOUSE UniProtKB/Swiss-Prot
  Q3TIE9 ENTREZGENE
  Q9CR84 ENTREZGENE
UniProt Secondary Q3TIE9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-15 Atp5mc1  ATP synthase membrane subunit c locus 1  Atp5g1  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)  Symbol and/or name updated 27372883 PROVISIONAL
2013-11-26 Atp5g1  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)    ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)  Symbol and/or name change 5135510 APPROVED
2011-07-27 Atp5g1  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c1 (subunit 9)  Atp5g1  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1  Symbol and/or name change 5135510 APPROVED