Sp6 (trans-acting transcription factor 6) - Rat Genome Database

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Gene: Sp6 (trans-acting transcription factor 6) Mus musculus
Analyze
Symbol: Sp6
Name: trans-acting transcription factor 6
RGD ID: 1556994
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in epithelial to mesenchymal transition and odontogenesis. Acts upstream of or within regulation of odontogenesis. Predicted to be located in cytosol and nucleus. Is expressed in several structures, including branchial arch; genitourinary system; limb ectoderm; limb epithelium; and tooth. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 1K. Orthologous to human SP6 (Sp6 transcription factor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110025J03Rik; AA591031; AI592962; Ep; Epfn; epiprofin; Klf1; Klf14; krueppel-like factor 14; Kruppel-like factor 14; Sp6 transcription factor; specificity protein 6; transcription factor Sp6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,904,395 - 96,915,565 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1196,904,220 - 96,915,560 (+)EnsemblGRCm39 Ensembl
GRCm381197,013,569 - 97,024,739 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,013,394 - 97,024,734 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,874,883 - 96,886,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,829,659 - 96,840,824 (+)NCBIMGSCv36mm8
Celera11106,665,454 - 106,676,055 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1160.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sp6Mouseamelogenesis imperfecta  ISOSp6 (Rattus norvegicus)10047189 RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sp6Mousehereditary breast ovarian cancer syndrome  ISOSP6 (Homo sapiens)8554872ClinVar Annotator: match by term: Breast-ovarian cancer more ...ClinVarPMID:38922859
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sp6Mouseamelogenesis imperfecta type 1K  ISOSP6 (Homo sapiens)7240710 OMIM 

1 to 20 of 56 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sp6Mouse1,2-dimethylhydrazine increases expressionEXP 64804641 and 2-Dimethylhydrazine results in increased expression of SP6 mRNACTDPMID:22206623
Sp6Mouse17beta-estradiol multiple interactionsISOSP6 (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of SP6 mRNACTDPMID:30165855
Sp6Mouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOSp6 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of SP6 mRNACTDPMID:33387578
Sp6Mouse4,4'-sulfonyldiphenol decreases expressionEXP 6480464bisphenol S results in decreased expression of SP6 mRNACTDPMID:30951980
Sp6Mouseaflatoxin B1 decreases methylationISOSP6 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of SP6 gene and Aflatoxin B1 results in decreased methylation of SP6 promoterCTDPMID:27153756 and PMID:30157460
Sp6MouseAflatoxin B2 alpha decreases methylationISOSP6 (Homo sapiens)6480464aflatoxin B2 results in decreased methylation of SP6 intron and aflatoxin B2 results in decreased methylation of SP6 promoterCTDPMID:30157460
Sp6Mousearistolochic acid A increases expressionISOSP6 (Homo sapiens)6480464aristolochic acid I results in increased expression of SP6 mRNACTDPMID:33212167
Sp6Mouseatrazine increases expressionISOSP6 (Homo sapiens)6480464Atrazine results in increased expression of SP6 mRNACTDPMID:22378314
Sp6Mousebenzo[a]pyrene decreases expressionEXP 6480464Benzo(a)pyrene results in decreased expression of SP6 mRNACTDPMID:21569818
Sp6Mousebenzo[a]pyrene increases methylationISOSP6 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of SP6 3' UTR and Benzo(a)pyrene results in increased methylation of SP6 promoterCTDPMID:27901495
Sp6Mousebenzo[a]pyrene affects methylationISOSP6 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of SP6 5' UTR and Benzo(a)pyrene affects the methylation of SP6 promoterCTDPMID:27901495 and PMID:30157460
Sp6MouseBenzo[k]fluoranthene decreases expressionEXP 6480464benzo(k)fluoranthene results in decreased expression of SP6 mRNACTDPMID:26377693
Sp6Mousebisphenol A decreases expressionISOSp6 (Rattus norvegicus)6480464bisphenol A results in decreased expression of SP6 mRNACTDPMID:25181051
Sp6Mousebisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of SP6 mRNACTDPMID:30951980
Sp6Mousebisphenol F decreases expressionEXP 6480464bisphenol F results in decreased expression of SP6 mRNACTDPMID:30951980
Sp6Mousebutanal increases expressionISOSP6 (Homo sapiens)6480464butyraldehyde results in increased expression of SP6 mRNACTDPMID:26079696
Sp6Mousechlorpyrifos increases expressionEXP 6480464Chlorpyrifos results in increased expression of SP6 mRNACTDPMID:34289071
Sp6Mousecisplatin increases expressionISOSP6 (Homo sapiens)6480464Cisplatin results in increased expression of SP6 mRNACTDPMID:27392435
Sp6Mousedorsomorphin multiple interactionsISOSP6 (Homo sapiens)6480464[NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...CTDPMID:27188386
Sp6Mousedoxorubicin decreases expressionISOSP6 (Homo sapiens)6480464Doxorubicin results in decreased expression of SP6 mRNACTDPMID:29803840

1 to 20 of 56 rows

Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sp6Mousecytosol part_ofISOSp6 (Rattus norvegicus)9068941PMID:22676574CACAOPMID:22676574 and REF_RGD_ID:10047189
Sp6Mousecytosol located_inIEAUniProtKB:D3ZT88 and ensembl:ENSRNOP000000308322290270 EnsemblGO_REF:0000107
Sp6Mousecytosol located_inISOSp6 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Sp6Mousenucleus located_inISOSp6 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Sp6Mousenucleus located_inIEAUniProtKB-SubCell:SL-01912290270 UniProtGO_REF:0000044
Sp6Mousenucleus part_ofISOSp6 (Rattus norvegicus)9068941PMID:22676574CACAOPMID:22676574 and REF_RGD_ID:10047189

Molecular Function

  

1 to 20 of 47 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sp6Mouseabnormal ameloblast morphology  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal dentin morphology  IAGP 5509061 MGIPMID:18156176
Sp6Mouseabnormal dentin morphology  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal enamel organ morphology  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal hair cuticle  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal hair follicle inner root sheath morphology  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal hair shaft morphology  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal Hertwig epithelial root sheath morphology  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal incisor morphology  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal molar cusp morphology  IAGP 5509061 MGIPMID:18156176
Sp6Mouseabnormal molar cusp morphology  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal pulmonary alveolus morphology  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal tooth color  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal tooth development  IAGP 5509061 MGIPMID:18156176
Sp6Mouseabnormal tooth development  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal tooth hard tissue morphology  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabnormal tooth mineralization  IAGP 5509061 MGIPMID:18156176
Sp6Mouseabnormal tooth morphology  IAGP 5509061 MGIPMID:18297738
Sp6Mouseabsent enamel  IAGP 5509061 MGIPMID:18156176
Sp6Mouseabsent enamel  IAGP 5509061 MGIPMID:18297738
1 to 20 of 47 rows

#
Reference Title
Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Novel genetic linkage of rat Sp6 mutation to Amelogenesis imperfecta. Muto T, etal., Orphanet J Rare Dis. 2012 Jun 7;7:34. doi: 10.1186/1750-1172-7-34.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11087666   PMID:12477932   PMID:14551215   PMID:15820306   PMID:16141072   PMID:16141073  
PMID:17121988   PMID:17199044   PMID:17509151   PMID:17624655   PMID:18156176   PMID:18287559   PMID:18297738   PMID:18799693   PMID:19136628   PMID:19251658   PMID:19913006   PMID:20059953  
PMID:21267068   PMID:21873635   PMID:22174793   PMID:22868911   PMID:22988430   PMID:23358455   PMID:24146773   PMID:24948603   PMID:25166858   PMID:25344255   PMID:27787957   PMID:28532839  
PMID:28962896   PMID:29123026   PMID:30504223   PMID:32258035   PMID:33192593   PMID:33469169   PMID:34662808   PMID:35831953   PMID:39286503  



Sp6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,904,395 - 96,915,565 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1196,904,220 - 96,915,560 (+)EnsemblGRCm39 Ensembl
GRCm381197,013,569 - 97,024,739 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,013,394 - 97,024,734 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,874,883 - 96,886,052 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,829,659 - 96,840,824 (+)NCBIMGSCv36mm8
Celera11106,665,454 - 106,676,055 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1160.51NCBI
SP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381747,844,908 - 47,876,311 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1747,844,908 - 47,855,874 (-)EnsemblGRCh38hg38GRCh38
GRCh371745,922,274 - 45,933,063 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361743,277,279 - 43,288,239 (-)NCBINCBI36Build 36hg18NCBI36
Build 341743,277,278 - 43,288,239NCBI
Celera1742,375,084 - 42,386,045 (-)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1741,291,197 - 41,302,158 (-)NCBIHuRef
CHM1_11745,987,218 - 45,998,179 (-)NCBICHM1_1
T2T-CHM13v2.01748,706,681 - 48,738,087 (-)NCBIT2T-CHM13v2.0
Sp6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81082,501,957 - 82,506,138 (+)NCBIGRCr8
mRatBN7.21082,005,518 - 82,009,699 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,005,294 - 82,011,013 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1086,953,607 - 86,957,796 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01086,451,657 - 86,455,846 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01081,844,238 - 81,848,427 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01084,950,751 - 84,961,368 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,955,864 - 84,960,045 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,741,722 - 84,751,853 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41085,741,421 - 85,745,602 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11085,758,059 - 85,759,190 (+)NCBI
Celera1080,766,887 - 80,771,068 (+)NCBICelera
Cytogenetic Map10q31NCBI
Sp6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,264,756 - 13,270,104 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,264,537 - 13,270,104 (+)NCBIChiLan1.0ChiLan1.0
SP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21917,254,674 - 17,258,249 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11719,220,262 - 19,223,837 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0179,673,572 - 9,692,382 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,863,804 - 9,874,693 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,871,175 - 9,872,305 (+)Ensemblpanpan1.1panPan2
SP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1924,175,979 - 24,183,245 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl924,178,438 - 24,179,568 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha923,644,007 - 23,652,241 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0924,971,025 - 24,979,266 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl924,973,486 - 24,974,616 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1923,741,134 - 23,749,372 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0924,001,979 - 24,010,212 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0924,128,664 - 24,136,901 (-)NCBIUU_Cfam_GSD_1.0
Sp6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560223,607,525 - 23,613,413 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649013,456,393 - 13,465,684 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649013,456,393 - 13,466,813 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1224,100,801 - 24,106,792 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11224,100,769 - 24,106,828 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21223,978,634 - 23,983,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11668,243,319 - 68,276,951 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1668,247,695 - 68,248,825 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607739,295,985 - 39,302,284 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sp6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247954,501,141 - 4,502,280 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247954,499,022 - 4,504,565 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Sp6
294 total Variants

Predicted Target Of
Summary Value
Count of predictions:2056
Count of miRNA genes:536
Interacting mature miRNAs:653
Transcripts:ENSMUST00000047997, ENSMUST00000107622
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 60 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse

1 to 10 of 60 rows
RH125032  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381197,022,954 - 97,023,138UniSTSGRCm38
MGSCv371196,884,268 - 96,884,452UniSTSGRCm37
Celera11106,674,271 - 106,674,455UniSTS
Cytogenetic Map11DUniSTS
UniSTS:236717  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381197,024,375 - 97,024,575UniSTSGRCm38
MGSCv371196,885,689 - 96,885,889UniSTSGRCm37
Celera11106,675,692 - 106,675,892UniSTS
Cytogenetic Map11DUniSTS
AI592962  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381197,024,400 - 97,024,492UniSTSGRCm38
MGSCv371196,885,714 - 96,885,806UniSTSGRCm37
Celera11106,675,717 - 106,675,809UniSTS
Cytogenetic Map11DUniSTS
Whitehead/MRC_RH111276.12UniSTS







Ensembl Acc Id: ENSMUST00000047997   ⟹   ENSMUSP00000039307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,904,220 - 96,915,560 (+)Ensembl
GRCm38.p6 Ensembl1197,013,394 - 97,024,734 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107622   ⟹   ENSMUSP00000103248
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,909,559 - 96,915,557 (+)Ensembl
GRCm38.p6 Ensembl1197,018,733 - 97,024,731 (+)Ensembl
RefSeq Acc Id: NM_001363230   ⟹   NP_001350159
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,909,568 - 96,915,565 (+)NCBI
GRCm381197,018,742 - 97,024,739 (+)NCBI
Sequence:
RefSeq Acc Id: NM_031183   ⟹   NP_112460
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,904,395 - 96,915,565 (+)NCBI
GRCm381197,013,569 - 97,024,739 (+)NCBI
MGSCv371196,874,883 - 96,886,052 (+)RGD
Celera11106,665,454 - 106,676,055 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_112460   ⟸   NM_031183
- UniProtKB: Q6VM22 (UniProtKB/Swiss-Prot),   Q9ESX2 (UniProtKB/Swiss-Prot),   A2A708 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001350159   ⟸   NM_001363230
- UniProtKB: Q9ESX2 (UniProtKB/Swiss-Prot),   Q6VM22 (UniProtKB/Swiss-Prot),   A2A708 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000103248   ⟸   ENSMUST00000107622
Ensembl Acc Id: ENSMUSP00000039307   ⟸   ENSMUST00000047997
C2H2-type

Name Modeler Protein Id AA Range Protein Structure
AF-Q9ESX2-F1-model_v2 AlphaFold Q9ESX2 1-376 view protein structure

RGD ID:6822193
Promoter ID:MM_KWN:9450
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:UC007LDI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361196,880,066 - 96,880,566 (+)MPROMDB
RGD ID:8676378
Promoter ID:EPDNEW_M16220
Type:single initiation site
Name:Sp6_1
Description:Mus musculus trans-acting transcription factor 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381197,018,763 - 97,018,823EPDNEW


1 to 23 of 23 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000038560 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000047997 ENTREZGENE
  ENSMUST00000047997.8 UniProtKB/Swiss-Prot
  ENSMUST00000107622 ENTREZGENE
  ENSMUST00000107622.2 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report mmu:83395 UniProtKB/Swiss-Prot
MGD MGI:1932575 ENTREZGENE
NCBI Gene 83395 ENTREZGENE
PANTHER KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot
  TRANSCRIPTION FACTOR SP6 UniProtKB/Swiss-Prot
Pfam zf-C2H2 UniProtKB/Swiss-Prot
PhenoGen Sp6 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot
UniProt A2A708 ENTREZGENE, UniProtKB/TrEMBL
  Q6VM22 ENTREZGENE
  Q9ESX2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q6VM22 UniProtKB/Swiss-Prot
1 to 23 of 23 rows