Hoxb5 (homeobox B5) - Rat Genome Database

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Gene: Hoxb5 (homeobox B5) Mus musculus
Analyze
Symbol: Hoxb5
Name: homeobox B5
RGD ID: 1556931
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including embryonic skeletal system morphogenesis; endothelial cell differentiation; and regulation of DNA-templated transcription. Located in nucleus. Is expressed in several structures, including embryo mesenchyme; genitourinary system; gut; lung; and nervous system. Orthologous to human HOXB5 (homeobox B5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI385717; homeo box B5; homeobox protein H24.1; homeobox protein Hox-2.1; homeobox protein Hox-B5; homeobox protein Mu-1; Hox-2.; Hox-2.1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,194,338 - 96,196,947 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1196,194,162 - 96,196,947 (+)EnsemblGRCm39 Ensembl
GRCm381196,303,512 - 96,306,121 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,303,336 - 96,306,121 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,164,826 - 96,167,435 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,119,602 - 96,122,210 (+)NCBIMGSCv36mm8
Celera11105,954,390 - 105,956,999 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)
fibrillar center  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IDA)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1292750   PMID:1346798   PMID:1348361   PMID:1353982   PMID:1358459   PMID:1363087   PMID:1683482   PMID:1685115   PMID:1688181   PMID:1972280   PMID:1976088   PMID:1983472  
PMID:1989904   PMID:2458220   PMID:2463210   PMID:2482246   PMID:2566383   PMID:2571936   PMID:2875852   PMID:2881353   PMID:2882472   PMID:2889591   PMID:2890503   PMID:2899893  
PMID:2906328   PMID:2907403   PMID:3000607   PMID:4058581   PMID:4065933   PMID:4075393   PMID:7541756   PMID:7628700   PMID:7828847   PMID:7903957   PMID:7909996   PMID:8099712  
PMID:8105001   PMID:8555112   PMID:8625838   PMID:8703472   PMID:8887324   PMID:8889548   PMID:8930688   PMID:9106661   PMID:9108390   PMID:9174240   PMID:9334279   PMID:9367423  
PMID:9415485   PMID:9450632   PMID:9501100   PMID:9575880   PMID:9639506   PMID:9694798   PMID:10208743   PMID:10328847   PMID:10349636   PMID:10419695   PMID:10579975   PMID:10642791  
PMID:10885747   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11518511   PMID:11869294   PMID:12370779   PMID:12466851   PMID:12477932   PMID:12505043   PMID:12514132   PMID:12527197  
PMID:12753872   PMID:12897140   PMID:15042701   PMID:15053971   PMID:15489334   PMID:15618518   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16632597   PMID:16870358   PMID:16919269  
PMID:16971476   PMID:17572674   PMID:17626057   PMID:18287559   PMID:18395091   PMID:18547144   PMID:18554416   PMID:18562676   PMID:18832391   PMID:19091803   PMID:19204410   PMID:19922872  
PMID:20059953   PMID:20211142   PMID:20932939   PMID:21098569   PMID:21267068   PMID:21873635   PMID:22174793   PMID:22701719   PMID:22711520   PMID:22872086   PMID:22988430   PMID:23103965  
PMID:23307742   PMID:23585229   PMID:23843306   PMID:24078914   PMID:24141719   PMID:24146773   PMID:24218595   PMID:24525295   PMID:24952961   PMID:25220476   PMID:25381007   PMID:26235626  
PMID:26329601   PMID:26863982   PMID:26930384   PMID:27650319   PMID:28041967   PMID:28188179   PMID:28576978   PMID:29031500   PMID:29434353   PMID:30169530   PMID:30254164   PMID:30348760  
PMID:30470704   PMID:30931988   PMID:30959515   PMID:31112136   PMID:31754028   PMID:32479258   PMID:32553152   PMID:33257809   PMID:33897880   PMID:35582777   PMID:36577717   PMID:37167859  
PMID:37390208   PMID:38324932   PMID:38636517   PMID:39289460  


Genomics

Comparative Map Data
Hoxb5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,194,338 - 96,196,947 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1196,194,162 - 96,196,947 (+)EnsemblGRCm39 Ensembl
GRCm381196,303,512 - 96,306,121 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,303,336 - 96,306,121 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,164,826 - 96,167,435 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,119,602 - 96,122,210 (+)NCBIMGSCv36mm8
Celera11105,954,390 - 105,956,999 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.82NCBI
HOXB5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381748,591,257 - 48,593,779 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1748,591,257 - 48,593,779 (-)EnsemblGRCh38hg38GRCh38
GRCh371746,668,619 - 46,671,141 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361744,023,618 - 44,026,102 (-)NCBINCBI36Build 36hg18NCBI36
Build 341744,023,618 - 44,026,117NCBI
Celera1743,122,774 - 43,125,258 (-)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1742,037,429 - 42,039,913 (-)NCBIHuRef
CHM1_11746,734,583 - 46,737,067 (-)NCBICHM1_1
T2T-CHM13v2.01749,454,847 - 49,457,369 (-)NCBIT2T-CHM13v2.0
Hoxb5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81081,765,911 - 81,768,119 (+)NCBIGRCr8
mRatBN7.21081,269,372 - 81,271,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1081,269,372 - 81,271,580 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1086,218,371 - 86,220,576 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01085,716,406 - 85,718,611 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01081,108,879 - 81,111,087 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01084,152,152 - 84,154,360 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,152,152 - 84,154,360 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01083,954,884 - 83,957,092 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41085,035,516 - 85,037,724 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1080,035,535 - 80,037,743 (+)NCBICelera
Cytogenetic Map10q26NCBI
Hoxb5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545112,637,822 - 12,650,261 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545112,637,229 - 12,650,261 (+)NCBIChiLan1.0ChiLan1.0
HOXB5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21916,506,021 - 16,511,439 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11718,474,509 - 18,478,120 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0178,941,990 - 8,945,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,127,630 - 9,130,616 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,127,630 - 9,130,616 (+)Ensemblpanpan1.1panPan2
HOXB5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1924,853,759 - 24,856,478 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl924,853,759 - 24,856,437 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha924,317,644 - 24,320,366 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0925,648,188 - 25,650,916 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl925,648,192 - 25,651,900 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1924,416,318 - 24,419,025 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0924,676,928 - 24,679,617 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0924,805,163 - 24,807,879 (-)NCBIUU_Cfam_GSD_1.0
Hoxb5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,278,920 - 24,281,649 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649012,793,485 - 12,796,219 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649012,793,485 - 12,796,219 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXB5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1224,845,225 - 24,847,918 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11224,845,224 - 24,849,639 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,873,469 - 24,877,903 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOXB5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11669,004,385 - 69,008,789 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1669,004,251 - 69,006,827 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607740,060,023 - 40,064,367 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hoxb5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247955,089,323 - 5,092,764 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247955,089,259 - 5,092,770 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hoxb5
41 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1144
Count of miRNA genes:570
Interacting mature miRNAs:653
Transcripts:ENSMUST00000049272
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14700796Syncq9_msynovial calcification QTL 9 (mouse)119593782696992826Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
15092049Wsigrme3_mweek six growth rate, maternal effect 3 (mouse)118487732496629512Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
15092057Lgrme3_mlate growth rate, maternal effect 3 (mouse)118487732496629512Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1301491Abbp4_mA/J and C57BL/6 blood pressure 4 (mouse)Not determined118869958899081597Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
13524529Bodwtq10_mbody wweight QTL 10 (mouse)119067951297699512Mouse

Markers in Region
AI385717  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381196,305,791 - 96,305,935UniSTSGRCm38
MGSCv371196,167,105 - 96,167,249UniSTSGRCm37
Celera11105,956,669 - 105,956,813UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.04UniSTS
Whitehead/MRC_RH111268.32UniSTS
Hoxb5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371196,166,969 - 96,167,132UniSTSGRCm37
MGSCv371196,167,024 - 96,167,380UniSTSGRCm37
Celera11105,956,588 - 105,956,944UniSTS
Celera11105,956,533 - 105,956,696UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
cM Map1156.04UniSTS
Hoxb5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381196,305,655 - 96,305,818UniSTSGRCm38
MGSCv371196,166,969 - 96,167,132UniSTSGRCm37
Celera11105,956,533 - 105,956,696UniSTS
Cytogenetic Map11DUniSTS
cM Map1156.0UniSTS
Hoxb5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381196,305,710 - 96,306,066UniSTSGRCm38
MGSCv371196,167,024 - 96,167,380UniSTSGRCm37
Celera11105,956,588 - 105,956,944UniSTS
Cytogenetic Map11DUniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000049272   ⟹   ENSMUSP00000035423
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,194,338 - 96,196,946 (+)Ensembl
GRCm38.p6 Ensembl1196,303,512 - 96,306,120 (+)Ensembl
Ensembl Acc Id: ENSMUST00000190470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1196,194,162 - 96,196,947 (+)Ensembl
GRCm38.p6 Ensembl1196,303,336 - 96,306,121 (+)Ensembl
RefSeq Acc Id: NM_008268   ⟹   NP_032294
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391196,194,338 - 96,196,947 (+)NCBI
GRCm381196,303,512 - 96,306,121 (+)ENTREZGENE
MGSCv371196,164,826 - 96,167,435 (+)RGD
Celera11105,954,390 - 105,956,999 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032294   ⟸   NM_008268
- UniProtKB: Q3ZAY8 (UniProtKB/Swiss-Prot),   P09079 (UniProtKB/Swiss-Prot),   Q9CZV0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000035423   ⟸   ENSMUST00000049272
Protein Domains
Homeobox

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P09079-F1-model_v2 AlphaFold P09079 1-269 view protein structure

Promoters
RGD ID:6821077
Promoter ID:MM_KWN:9395
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:NM_008268
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361196,164,336 - 96,165,237 (+)MPROMDB
RGD ID:8676404
Promoter ID:EPDNEW_M16197
Type:initiation region
Name:Hoxb5_1
Description:Mus musculus homeobox B5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381196,303,537 - 96,303,597EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96186 AgrOrtholog
Ensembl Genes ENSMUSG00000038700 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000049272 ENTREZGENE
  ENSMUST00000049272.5 UniProtKB/Swiss-Prot
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Antp_homeobox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_antennapedia UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_Antennapedia_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15413 UniProtKB/Swiss-Prot
MGD MGI:96186 ENTREZGENE
NCBI Gene 15413 ENTREZGENE
PANTHER HOMEOBOX PROTEIN HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX PROTEIN HOX-B5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hoxb5 PhenoGen
PRINTS ANTENNAPEDIA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANTENNAPEDIA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt HXB5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3ZAY8 ENTREZGENE
  Q9CZV0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q3ZAY8 UniProtKB/Swiss-Prot