Myo19 (myosin XIX) - Rat Genome Database

Name: Myo19
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Myo19 (myosin XIX) Rattus norvegicus

Analyze

Symbol:

Myo19

Name:

myosin XIX

RGD ID:

1559961

Description:

Predicted to enable ATP hydrolysis activity; cytoskeletal protein binding activity; and plus-end directed microfilament motor activity. Predicted to be involved in several processes, including regulation of cytokinesis; regulation of mitochondrial fission; and vesicle transport along actin filament. Predicted to act upstream of or within mitochondrion migration along actin filament and mitocytosis. Predicted to be located in cytosol and mitochondrial outer membrane. Predicted to be part of myosin complex. Predicted to be active in several cellular components, including actin cytoskeleton; cytoplasm; and vesicle. Orthologous to human MYO19 (myosin XIX); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC497974; RGD1559961; similar to novel protein; unconventional myosin-XIX

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MYO19 (myosin XIX)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Myo19 (myosin XIX)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Myo19 (myosin XIX)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MYO19 (myosin XIX)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MYO19 (myosin XIX)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Myo19 (myosin XIX)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MYO19 (myosin XIX)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MYO19 (myosin XIX)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Myo19 (myosin XIX)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	LSAMP (limbic system associated membrane protein)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MYO19 (myosin XIX)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Myo19 (myosin XIX)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	myo19	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	70,250,500 - 70,279,867 (+)	NCBI		GRCr8
mRatBN7.2	10	69,753,082 - 69,782,450 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	69,753,068 - 69,782,450 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	74,373,160 - 74,402,445 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	73,877,927 - 73,907,212 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	69,342,595 - 69,371,881 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	72,198,475 - 72,227,892 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	72,197,977 - 72,227,462 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	72,105,466 - 72,134,751 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	73,156,527 - 73,185,812 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	68,681,147 - 68,710,436 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

chromosome 17q12 deletion syndrome (ISO)

cleft palate (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

Glycosylphosphatidylinositol Biosynthesis Defect 1 (ISO)

hyperphosphatasia with impaired intellectual development syndrome 5 (ISO)

Neurodevelopmental Disorders (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amitrole (EXP)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

folic acid (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

ketamine (EXP)

menadione (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

morphine (ISO)

nickel atom (ISO)

nitrofen (EXP)

ozone (ISO)

paraquat (EXP)

PCB138 (ISO)

perfluorooctanoic acid (ISO)

phenethyl isothiocyanate (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

testosterone (ISO)

theophylline (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

Triptolide (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (IBA)

mitochondrion migration along actin filament (ISO)

mitocytosis (ISO)

regulation of cytokinesis (ISO)

regulation of mitochondrial fission (ISO)

vesicle transport along actin filament (IBA)

Cellular Component

actin cytoskeleton (IBA)

cytoplasm (IBA)

cytosol (IEA,ISO)

membrane (IBA)

mitochondrial outer membrane (ISO)

mitochondrion (ISO)

myosin complex (IEA)

plasma membrane bounded cell projection (IEA)

vesicle (IBA)

Molecular Function

actin binding (ISO)

actin filament binding (IBA)

ATP binding (IEA)

ATP hydrolysis activity (ISO)

microfilament motor activity (IBA)

myosin light chain binding (ISO)

plus-end directed microfilament motor activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19932026	PMID:23568824	PMID:24825904	PMID:25447992	PMID:27126804

Genomics

Comparative Map Data

Myo19
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	70,250,500 - 70,279,867 (+)	NCBI		GRCr8
mRatBN7.2	10	69,753,082 - 69,782,450 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	69,753,068 - 69,782,450 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	74,373,160 - 74,402,445 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	73,877,927 - 73,907,212 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	69,342,595 - 69,371,881 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	72,198,475 - 72,227,892 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	72,197,977 - 72,227,462 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	72,105,466 - 72,134,751 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	73,156,527 - 73,185,812 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	68,681,147 - 68,710,436 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

MYO19
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	36,495,636 - 36,544,815 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	36,495,636 - 36,543,435 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	34,851,480 - 34,890,695 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	31,925,712 - 31,964,838 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	31,925,712 - 31,964,788	NCBI
Celera	17	31,673,687 - 31,713,368 (-)	NCBI		Celera
Cytogenetic Map	17	q12	NCBI
HuRef	17	30,788,413 - 30,828,072 (-)	NCBI		HuRef
CHM1_1	17	34,887,320 - 34,927,020 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	37,481,389 - 37,530,568 (-)	NCBI		T2T-CHM13v2.0

Myo19
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	84,770,996 - 84,802,052 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	84,770,974 - 84,802,052 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	84,880,170 - 84,911,226 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	84,880,148 - 84,911,226 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	84,693,722 - 84,724,633 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	84,964,503 - 84,981,026 (+)	NCBI		MGSCv36	mm8
Celera	11	94,500,519 - 94,531,341 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	51.34	NCBI

Myo19
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	1,392,645 - 1,436,514 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	1,391,793 - 1,436,514 (+)	NCBI	ChiLan1.0	ChiLan1.0

MYO19
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	28,226,242 - 28,265,314 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	30,105,978 - 30,146,996 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	20,546,652 - 20,586,131 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	20,840,913 - 20,880,359 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	20,840,913 - 20,880,242 (+)	Ensembl	panpan1.1		panPan2

MYO19
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	36,383,777 - 36,429,730 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	36,349,191 - 36,428,091 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	35,609,742 - 35,656,205 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	37,196,479 - 37,239,380 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	37,162,166 - 37,229,295 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	35,975,162 - 36,021,869 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	36,262,114 - 36,308,816 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	36,350,352 - 36,397,060 (-)	NCBI		UU_Cfam_GSD_1.0

Myo19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	35,367,635 - 35,396,076 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	1,679,187 - 1,706,976 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	1,679,092 - 1,706,976 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MYO19
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	38,020,110 - 38,061,883 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	38,020,102 - 38,073,968 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	39,554,707 - 39,584,059 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MYO19
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	31,270,855 - 31,313,273 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	31,271,586 - 31,312,621 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	2,011,389 - 2,054,781 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Myo19
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624871	3,585,009 - 3,616,277 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624871	3,585,009 - 3,616,289 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Myo19
119 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	208
Count of miRNA genes:	143
Interacting mature miRNAs:	156
Transcripts:	ENSRNOT00000003886
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
631565	Hcuc4	Hepatic copper content QTL 4	4.15		liver copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	10	66941813	73452992	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	49444551	81709989	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	66743655	98003205	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	65927233	82565079	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61345276	81714865	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61345413	82564856	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67502108	73579767	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	49444551	81709989	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49444551	81709989	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat

Markers in Region

RH131035

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	69,776,124 - 69,776,336 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	72,221,568 - 72,221,779	NCBI	Rnor6.0
Rnor_5.0	10	72,128,427 - 72,128,638	UniSTS	Rnor5.0
RGSC_v3.4	10	73,179,488 - 73,179,699	UniSTS	RGSC3.4
Celera	10	68,704,112 - 68,704,323	UniSTS
Cytogenetic Map	10	q26	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	19	8	2	5	2			53	31	20
Low	1	24	49	39	14	39	8	11	21	4	21	11	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001163736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003886 ⟹ ENSRNOP00000003886

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	69,753,164 - 69,782,450 (+)	Ensembl
Rnor_6.0 Ensembl	10	72,197,977 - 72,227,462 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119574 ⟹ ENSRNOP00000096238

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	69,753,068 - 69,764,646 (+)	Ensembl

RefSeq Acc Id:

NM_001163736 ⟹ NP_001157208

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,582 - 70,279,867 (+)	NCBI
mRatBN7.2	10	69,753,164 - 69,782,450 (+)	NCBI
Rnor_6.0	10	72,198,607 - 72,227,892 (+)	NCBI
Rnor_5.0	10	72,105,466 - 72,134,751 (+)	NCBI
RGSC_v3.4	10	73,156,527 - 73,185,812 (+)	RGD
Celera	10	68,681,147 - 68,710,436 (+)	RGD

Sequence:

show sequence

CGCCTTTCCAATCGGTCTGGGCCGGGACTACACGCTGGGCGCCGGGGCCGTGGGACCGAAATTC
TTGGTGGTAAACTCGAGAGGAGGGAGCAGGAGAACTGGAGAAAACTGCTCTGATTCGATTTGAC
TTCAACCAGGAGTTGACGCTGCAAAGTAATAACCAGCATTTACTCAGCTCTCTCGCAGGTTTCG
AGATGACTTGTGGGCGATTCCCACACACCTGAGTCTTCTGCTGGAGTGATGGCCTCATGACCAG
GTTGACAGACAGTACTGCCAGTGTCTGTGACACAGAACTCTGGCTGACCACACTGAAGCACGAT
GCACCAGCAGGTGAATGGCCACAGTTTAGGCTCTGATACCCAAGGCAGGACATCCCTCAAGGGC
GACCTAAGGGAGTTCCTGGGTGGGGAGGTCCCACTGCACCAGCTGGATGACCTCACCAAGGTGA
ATCCCGTGACACTGGAAACAGTCCTGAGGTGCCTGCAGGCCCGGTACACAGAAGACATATTCTA
TACCAATGCTGGCTGTACCTTGGTAGCTCTGAACCCCTTTAAGCACATCCCTCAACTCTATGCA
CCAGAACTGATGCAAGAGTACCATGCTGCACCTCAGCCTCAGAAATTAAAACCCCACATCTTCA
CAGTGGGTGAGCAGACCTACAGGAATGTCAAGAGCTTGATTGAGCCGATCAACCAATCCATTGT
GGTCAGTGGAGAGAGCGGAGCAGGAAAGACATGGACATCCCGATGCCTGATGAAGTTCTATGCT
GTGGTGGCTGCCTCACCTACTTCCTGTGAGAACCACAAGATGGCAGAGCGGATTGAAGAGCGGA
TCCTGAACTCCAACCCTGTCATGGAAGCTTTTGGGAACGCATGCACACTGAGGAATAACAACAG
CAGTCGCTTTGGGAAGTTCATCCAGCTCCAGCTGAACAGAGCCCAACAGATGACAGGAGCTGCA
GTCCAGACCTACCTCCTAGAGAAAACCCGTGTGGCCTGTCAGGCCGCCAGTGAGAGGAACTTCC
ACATCTTCTACCAGATTTGCAAAGGAGCCACCAAGGAAGAAAGGCTCCAGTGGTGCCTCCCTGA
GGGAACTGCCTTCTCCTGGCTACCCAATCCAGAAAGCAGTCTGGAAGAGGATTGTTTCGAGGTG
ACCAGAGAGGCCATGCTCCATCTGGGCATCGACACCCCCACCCAGAACAACATCTTTAAGGTCC
TAGCTGGACTACTGCACCTTGGCAATGTCCACTTCGTTGACTCAGAGGATGAAGCCCAGCCCTG
CCAACTGATGGATGGTACCAAGGGCTCTGTCAGGACCTCAGCCTTGCTGCTGCAGCTCCCAGAC
AACATGCTGCTGGAGAGCATGCAGATTCGAACCATCAAGGCAGGCAAGCAGCAGCAGGTGTTCC
AGAAGCCCTGCTCCAGAGCTGAGTGTGACACACGCAGAGACTGTCTGGCCAAACTGATCTATGC
ACGGCTATTCGACTGGCTGGTATCTGTGATCAACAGCAGCATCTGTGCAGACTTCAGCTCATGG
ACTGCCTTCATAGGTCTGCTAGATGTGTACGGGTTTGAGTCATTTCCTGACAACAGTCTGGAAC
AGTTGTGCATCAATTATGCCAATGAGAAGCTACAGCAGCACTTCGTGGCTCACTACCTCAGGGC
CCAGCAGGAGGAATATGAAGTTGAGGGCCTGGAGTGGTCATTTGTCAACTACCAGGACAACCAG
ACCTGTTTAGATCTCCTCGAAGGGAGCCCCATCAGCATCTGTTCCCTCATAAATGAGGAATGCC
GCCTTAACCGTCCGAGCAGTGCAGCACAACTACAGACACGCATTGAGAGCACGCTGGCAGGCAG
GCCCTGCCTGGGCCATAACAAGCTCAGCCGGGAGCCCAGCTTTGTGGTGATGCATTTCGCAGGA
CCTGTACGGTACTGCACAGCGGGCCTAGTGGAAAAGAACAAGGACCCTGTTCCCCCTGAGCTGA
CTGGGCTCCTGCAGCAATCCCAAGACCCCCTGCTCATGATGCTGTTTCCTGCTAACCCTGAAGA
GAAGACCCAGGAGGAGCTGTCTGGCCAGAGCAGGGCTCCTGCATTGACTGTGGTGTCCAAGTTC
AAGGCCTCACTGGAACAGCTCCTGCAGGTCCTGCATAAAACAACCCCCCACTACATTCGCTGCA
TCAAGCCCAACAGCCAGAGTCAGCCGCAGACTTTCCTCCAGGAAGAGGTCCTGAACCAGTTAGA
GGCCTGTGGTCTTGTGGAGACCATCCACATCAGTGCTGCTGGCTTTCCCATCCGGGTCTCTCAC
CAGAACTTCATGGAAAGATATAAATTGCTAACAAGACTCCGACCTCGTACATCCTCTGGCCTCA
GGAGCCTGTGTCCTGCCAAAGGGTCCTCTGAGCAGCCTCTGTGTGCCAAGGAGGCCACACTGCA
GCCTCTACTACAGGACATTCTCCATGCTCTGCCAGCTTTAATTCAGACAGCAACCACTCCCAGT
GACCCAGCTAAGACTGCACAAATCCCACTATACTGTGGCAGGACAAAGATTTTCATGACTGACT
CCATGCTAGAGCTTCTGGAATGTGGGCGTGCCCAGATGCTAGAGCAGTGTGCCCGCTGCATCCA
GTGTGGCTGGAGGCGACACCGGCTCCAAAAGCAGGAGAAGCAGAGGCGGGCGGCCGTGATCATT
CAGGCAGCTTTTCGGTCCTGGTTAACTCGGAAACACATCAGAAGGTTACACATAGCTGCCACAG
TCATCAAGCACGCATGGCATAAGTGGAGAATCAGAATGGCCTGTCTTGCCTCTAAAGAACTGGA
TGGTATGGAGGAAAAACTCATGCCTCAGGCTCCCGGTACCCTGCGTTCCTCGCTGTCCCCAGCA
CACACTAGGTTCCTGGGAGCAATAATCCACCTCTGGCCCCTGGGACTGGTGCTAGCCAACTCAG
CTGATGGCATGCGTGGCTTTCAGAGGAAACTGGTAGCCCATGCCTGCCTTCGGCTTCCCGCAAG
CGGCCCCAGCAACAAAGTCCAGACACCACAACAAGATCAGGCTGGTATCACATCCATCAGAGCA
CTGCCCCAGGGCTCAATAAAGTTCCACTGCAGGAAGTCTCCACTTCAGTATGCTGACATCTGCC
CTGACCCTTCAGCCTCTAATGTTACTGGCTTTAATCAGATTCTGCTGCTAGAAAGACACAGGCC
AGTCCAAGTGTGACTCTTCTACCCCCACCTGCCTGAGTGATCTTTACTGCTTTGTTTCCACAAG
CCCTTTTCCTGCCAGCTGCCTTGCCAAAGACATCTGATCCCACACACAAGTGCCAAGCTATTCC
CACAGCAACTCCAACTGACTCCAACTGCACGTGCAAGCAGATTCCAGCCTAAGCCAGGGCTTCA
TGGCCAAAGTGCCACCCTCCAGGGCTATGGCCTCAGCACTGGCAGGATCTGGGGGTGCTGGGTA
CCAAGCCAGGATTAGGGCCACAACATCCCAGCTTACTGTCTTTAGGCTCAGACTCATCAGATGT
AACTGTCCATCCAGAATGTCACTACAGCAAGATGGACACTGGGCCATCCACAAGCACTTTAAAG
GGCCAAGTCACCCTAAAATTGGCTCTAGAATTTTGGCTGGGGGAAAACTTGCATATAATTCATT
AAGGGAAGAATAATATTTAATAAACTGATTTATTTAATGTTACCAAGGACAATGAACAATACAG
GGTCAAGAGAACCACACCTTAAATTTCTTAACACTATCAGTTTTCGATTCAAATGGATACACTT
GGTATTTATGATGTAACTCTGAACTGTACAAGAAATAAAATTTAGACCCACCATCTAAATATAA
A

hide sequence

RefSeq Acc Id:

XM_039086621 ⟹ XP_038942549

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,500 - 70,274,187 (+)	NCBI
mRatBN7.2	10	69,753,082 - 69,775,378 (+)	NCBI

RefSeq Acc Id:

XM_063269649 ⟹ XP_063125719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,500 - 70,277,143 (+)	NCBI

RefSeq Acc Id:

XM_063269651 ⟹ XP_063125721

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,500 - 70,275,924 (+)	NCBI

RefSeq Acc Id:

XR_005489917

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,500 - 70,276,191 (+)	NCBI
mRatBN7.2	10	69,753,082 - 69,778,773 (+)	NCBI

RefSeq Acc Id:

XR_005489918

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,500 - 70,276,191 (+)	NCBI
mRatBN7.2	10	69,753,082 - 69,778,773 (+)	NCBI

RefSeq Acc Id:

XR_005489919

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,500 - 70,277,147 (+)	NCBI
mRatBN7.2	10	69,753,082 - 69,779,729 (+)	NCBI

RefSeq Acc Id:

XR_005489921

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,500 - 70,276,191 (+)	NCBI
mRatBN7.2	10	69,753,082 - 69,778,773 (+)	NCBI

RefSeq Acc Id:

XR_005489922

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,500 - 70,276,191 (+)	NCBI
mRatBN7.2	10	69,753,082 - 69,778,773 (+)	NCBI

RefSeq Acc Id:

XR_005489923

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,500 - 70,276,191 (+)	NCBI
mRatBN7.2	10	69,753,082 - 69,778,773 (+)	NCBI

RefSeq Acc Id:

XR_010055226

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,500 - 70,277,140 (+)	NCBI

RefSeq Acc Id:

XR_010055227

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	70,250,500 - 70,276,561 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001157208	(Get FASTA)	NCBI Sequence Viewer
	XP_038942549	(Get FASTA)	NCBI Sequence Viewer
	XP_063125719	(Get FASTA)	NCBI Sequence Viewer
	XP_063125721	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM05531	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003886.3
	ENSRNOP00000096238.1

RefSeq Acc Id:

NP_001157208 ⟸ NM_001163736

- UniProtKB:

D3Z8I9 (UniProtKB/TrEMBL), A6HHM6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MHQQVNGHSLGSDTQGRTSLKGDLREFLGGEVPLHQLDDLTKVNPVTLETVLRCLQARYTEDIF
YTNAGCTLVALNPFKHIPQLYAPELMQEYHAAPQPQKLKPHIFTVGEQTYRNVKSLIEPINQSI
VVSGESGAGKTWTSRCLMKFYAVVAASPTSCENHKMAERIEERILNSNPVMEAFGNACTLRNNN
SSRFGKFIQLQLNRAQQMTGAAVQTYLLEKTRVACQAASERNFHIFYQICKGATKEERLQWCLP
EGTAFSWLPNPESSLEEDCFEVTREAMLHLGIDTPTQNNIFKVLAGLLHLGNVHFVDSEDEAQP
CQLMDGTKGSVRTSALLLQLPDNMLLESMQIRTIKAGKQQQVFQKPCSRAECDTRRDCLAKLIY
ARLFDWLVSVINSSICADFSSWTAFIGLLDVYGFESFPDNSLEQLCINYANEKLQQHFVAHYLR
AQQEEYEVEGLEWSFVNYQDNQTCLDLLEGSPISICSLINEECRLNRPSSAAQLQTRIESTLAG
RPCLGHNKLSREPSFVVMHFAGPVRYCTAGLVEKNKDPVPPELTGLLQQSQDPLLMMLFPANPE
EKTQEELSGQSRAPALTVVSKFKASLEQLLQVLHKTTPHYIRCIKPNSQSQPQTFLQEEVLNQL
EACGLVETIHISAAGFPIRVSHQNFMERYKLLTRLRPRTSSGLRSLCPAKGSSEQPLCAKEATL
QPLLQDILHALPALIQTATTPSDPAKTAQIPLYCGRTKIFMTDSMLELLECGRAQMLEQCARCI
QCGWRRHRLQKQEKQRRAAVIIQAAFRSWLTRKHIRRLHIAATVIKHAWHKWRIRMACLASKEL
DGMEEKLMPQAPGTLRSSLSPAHTRFLGAIIHLWPLGLVLANSADGMRGFQRKLVAHACLRLPA
SGPSNKVQTPQQDQAGITSIRALPQGSIKFHCRKSPLQYADICPDPSASNVTGFNQILLLERHR
PVQV

hide sequence

Ensembl Acc Id:

ENSRNOP00000003886 ⟸ ENSRNOT00000003886

RefSeq Acc Id:	XP_038942549 ⟸ XM_039086621
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000096238 ⟸ ENSRNOT00000119574

RefSeq Acc Id:	XP_063125719 ⟸ XM_063269649
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063125721 ⟸ XM_063269651
- Peptide Label:	isoform X2

Protein Domains

Myosin motor

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z8I9-F1-model_v2	AlphaFold	D3Z8I9	1-964	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1559961	AgrOrtholog
BioCyc Gene	G2FUF-23832	BioCyc
Ensembl Genes	ENSRNOG00000002852	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003886.7	UniProtKB/TrEMBL
	ENSRNOT00000119574.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.820	UniProtKB/TrEMBL
	1.20.5.190	UniProtKB/TrEMBL
	1.20.58.530	UniProtKB/TrEMBL
	3.40.850.10	UniProtKB/TrEMBL
	6.20.240.20	UniProtKB/TrEMBL
	Myosin VI head, motor domain, U50 subdomain	UniProtKB/TrEMBL
InterPro	IQ_CaM-bd_region	UniProtKB/TrEMBL
	Kinesin_motor_dom_sf	UniProtKB/TrEMBL
	Myosin_head_motor_dom	UniProtKB/TrEMBL
	MYSc_Myo19	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
KEGG Report	rno:497974	UniProtKB/TrEMBL
NCBI Gene	497974	ENTREZGENE
PANTHER	MYOSIN	UniProtKB/TrEMBL
	UNCONVENTIONAL MYOSIN-XIX	UniProtKB/TrEMBL
Pfam	Myosin_head	UniProtKB/TrEMBL
	PF00612	UniProtKB/TrEMBL
PhenoGen	Myo19	PhenoGen
PRINTS	MYOSINHEAVY	UniProtKB/TrEMBL
PROSITE	MYOSIN_MOTOR	UniProtKB/TrEMBL
	PS50096	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002852	RatGTEx
SMART	MYSc	UniProtKB/TrEMBL
	SM00015	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I6AUT5_RAT	UniProtKB/TrEMBL
	A6HHM6	ENTREZGENE, UniProtKB/TrEMBL
	D3Z8I9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-12-10	Myo19	myosin XIX	RGD1559961	similar to novel protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1559961	similar to novel protein	RGD1559961_predicted	similar to novel protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1559961_predicted	similar to novel protein (predicted)	LOC497974	similar to novel protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC497974	similar to novel protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar