LOC120095484 (U2 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120095484 (U2 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120095484
Name: U2 spliceosomal RNA
RGD ID: 41019588
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: U2
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,373,070 - 86,373,206 (+)NCBIGRCr8
mRatBN7.21085,872,769 - 85,872,905 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1085,872,769 - 85,872,905 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map10q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in LOC120095484
2 total Variants

1 to 10 of 79 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631555Bp134Blood pressure QTL 1340.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)108051528791230079Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
4889948Bss91Bone structure and strength QTL 914tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)108256485692369470Rat

1 to 10 of 79 rows





GenBank Nucleotide JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000106923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1085,872,769 - 85,872,905 (+)Ensembl

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-23209 BioCyc
Ensembl Genes ENSRNOG00000067236 Ensembl
NCBI Gene LOC120095484 ENTREZGENE
PhenoGen LOC120095484 PhenoGen
RatGTEx ENSRNOG00000067236 RatGTEx
RNAcentral URS000070C8DF RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-26 LOC120095484  U2 spliceosomal RNA  U2  U2 spliceosomal RNA  Data merged from RGD:150340965 737654 PROVISIONAL
2021-08-31 U2  U2 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-27 LOC120095484  U2 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL