D10Rat60 Marker Search Result - Rat Genome Database

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Marker: D10Rat60

Symbol: D10Rat60
Previously known as: oxsts5993; R033-A01; R0033-A01; 
RGD ID: 36233
Expected Size: 161 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21055,050,213 - 55,050,374 (+)MAPPERmRatBN7.2
Rnor_6.01056,943,496 - 56,943,656NCBIRnor6.0
Rnor_5.01056,693,945 - 56,694,105UniSTSRnor5.0
RGSC_v3.41057,175,740 - 57,175,898RGDRGSC3.4
RGSC_v3.41057,175,741 - 57,175,901UniSTSRGSC3.4
RGSC_v3.11057,189,361 - 57,189,618RGD
Celera1054,201,461 - 54,201,617UniSTS
FHH x ACI Map1044.8799RGD
FHH x ACI Map1044.8799UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer TGTGAGCTCACAGCGCATA
Reverse Primer TTATGTTTGTGTGTGTATGTTTGTG
 
Template 
ATCAGAGGATCCCCACAGAATTTAAGACCATTTGCTTCAAAGTCATAGTGGGCTGGCCAGCTAA
CACCTGCAACTCCATTCCAAAGGACCCAGAGCCTCCTCTGGCCTCTGTGAGCTCACAGCGCATA
ACACACACACACACACACACACACACACACACACACATAAACACACACATAGACACACACACAG
ACACACAGAGACATACACACAAACACACAGACACAGAAACACACATACAGATATACACAAACAT
ACACACACAAACATAAGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGT
GTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCC
TGGGGTGCCTAATGAGTGAGCTA
Strain, Expected Size(s)

AVN/Orl 166 BBDP/Rhw 168 BBDR/Rhw 168
BC/CpbU 166 BDIX/Han 166 BDVII/Cub 166
BN-Lx/Cub 164 BN/SsNHsd 164 BP/Cub 170
BUF/Pit 166 DA/PitN 166 DON/Melb 166
F344/Pit 166 FHH/Eur 158 GH/Omr 166
GK/KyoSwe 168 IS/Kyo 158 LEW/Pit 166
LH/Mav 158 LN/Mav 164 LOU/CHan 166
M520/N 166 MHS/Gib 166 MNR/N 166
MNRA/N 166 MNS/Gib 160 MR/Pit 166
NEDH/K 158 ODU/N 166 OKA/Wsl 166
OM/Ztm 164 P5C 162 PVG/Pit 166
SD/Rij 158 SHR/OlaHsd 166 SHRSP/Riv 166
SR/Jr 158 SS/Jr 158 WAG/RijKyo 166
WF/Pit 166 WIST/Nhg 158 WN/N 166
WTC/Kyo 166


GenBank Nucleotide CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 77 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103571058068663659Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
152025227Bw195Body weight QTL 1955.73body mass (VT:0001259)104698969968663659Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105166340575085664Rat

1 to 10 of 77 rows