Spop (speckle type BTB/POZ protein)

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Gene: Spop (speckle type BTB/POZ protein) Rattus norvegicus

Analyze

Symbol:

Spop

Name:

speckle type BTB/POZ protein

RGD ID:

1311613

Description:

Predicted to have RNA polymerase II transcription factor binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in several processes, including cellular protein metabolic process; positive regulation of apoptotic process; and regulation of transcription, DNA-templated. Predicted to localize to Cul3-RING ubiquitin ligase complex and nuclear speck. Orthologous to human SPOP (speckle type BTB/POZ protein); PARTICIPATES IN Hedgehog signaling pathway; INTERACTS WITH bisphenol A; flutamide; ochratoxin A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

LOC287643; speckle-type POZ protein

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPOP (speckle type BTB/POZ protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Spop (speckle-type BTB/POZ protein)	HGNC	EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Spop (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPOP (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPOP (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Spop (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SPOP (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	LOC103243644 (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Spop (speckle type BTB/POZ protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SPOP (speckle type BTB/POZ protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Mus musculus (house mouse):	Spop (speckle-type BTB/POZ protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	spop (speckle-type POZ protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	bath-42	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	bath-43	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	rdx	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	bath-40	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	80,358,121 - 80,438,983 (+)	NCBI
Rnor_6.0 Ensembl	10	83,231,238 - 83,311,592 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	10	83,231,187 - 83,311,987 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	83,040,592 - 83,121,901 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	84,099,990 - 84,185,130 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	84,102,831 - 84,199,894 (+)	NCBI
Celera	10	79,129,126 - 79,210,141 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ductal Carcinoma (ISO)

Endometrial Neoplasms (ISO)

genetic disease (ISO)

Nabais Sa-de Vries Syndrome, Type 1 (ISO)

Nabais Sa-de Vries Syndrome, Type 2 (ISO)

prostate adenocarcinoma (ISO)

prostate cancer (ISO)

Prostatic Neoplasms (ISO)

uterine cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

acrolein (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

carbon nanotube (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenofibrate (ISO)

flutamide (EXP)

folic acid (ISO)

glyphosate (ISO)

ochratoxin A (EXP)

ozone (ISO)

PCB138 (ISO)

SB 431542 (ISO)

tetraphene (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

glucose homeostasis (ISO)

negative regulation of DNA-binding transcription factor activity (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway (ISO)

positive regulation of type B pancreatic cell apoptotic process (ISO)

proteasome-mediated ubiquitin-dependent protein catabolic process (IBA,ISO)

protein polyubiquitination (ISO)

regulation of proteolysis (IBA)

ubiquitin-dependent protein catabolic process (ISO)

Cellular Component

Cul3-RING ubiquitin ligase complex (ISO)

cytoplasm (IBA)

nuclear speck (ISO)

nucleus (IBA,ISO)

Molecular Function

protein binding (ISO)

RNA polymerase II transcription factor binding (ISO)

ubiquitin protein ligase binding (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Hedgehog signaling pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	MGD data from the GO Consortium
4.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5.	RGD automated data pipeline
6.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11279055	PMID:12477932	PMID:14528312	PMID:15121856	PMID:19684112	PMID:20679732	PMID:20811152	PMID:22085717

Genomics

Comparative Map Data

Spop
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	80,358,121 - 80,438,983 (+)	NCBI
Rnor_6.0 Ensembl	10	83,231,238 - 83,311,592 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	10	83,231,187 - 83,311,987 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	83,040,592 - 83,121,901 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	84,099,990 - 84,185,130 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	84,102,831 - 84,199,894 (+)	NCBI
Celera	10	79,129,126 - 79,210,141 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

SPOP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	49,598,884 - 49,678,163 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	49,598,884 - 49,678,163 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	47,676,246 - 47,755,525 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	45,031,245 - 45,110,524 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	17	45,031,246 - 45,110,524	NCBI
Celera	17	44,131,243 - 44,210,519 (-)	NCBI
Cytogenetic Map	17	q21.33	NCBI
HuRef	17	43,041,208 - 43,120,660 (-)	NCBI		HuRef
CHM1_1	17	47,741,302 - 47,820,599 (-)	NCBI		CHM1_1

Spop
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	95,304,909 - 95,384,236 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	95,304,906 - 95,384,232 (+)	Ensembl
GRCm38	11	95,414,083 - 95,493,410 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	95,414,080 - 95,493,406 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	95,275,397 - 95,354,724 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	95,230,204 - 95,309,103 (+)	NCBI			mm8
Celera	11	105,038,004 - 105,132,151 (+)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	59.01	NCBI

Spop
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	11,897,592 - 11,970,269 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	11,897,642 - 11,970,269 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPOP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	48,417,634 - 48,495,725 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	48,417,634 - 48,440,623 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	43,685,913 - 43,765,277 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SPOP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	9	25,686,439 - 25,752,900 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	9	25,685,723 - 25,752,953 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Spop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936490	11,894,449 - 11,969,730 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPOP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	25,792,626 - 25,860,712 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	25,792,621 - 25,860,630 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	25,770,383 - 25,777,618 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103243644
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	69,990,554 - 70,073,241 (-)	NCBI

Spop
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624795	5,698,131 - 5,769,209 (-)	NCBI

Position Markers

AU048745

Rat Assembly	Chr	Position (strand)	Source
Cytogenetic Map	5	q32	UniSTS
Cytogenetic Map	13	q24	UniSTS
Cytogenetic Map	6	q32	UniSTS
Cytogenetic Map	17	p12	UniSTS
Cytogenetic Map	16	p14	UniSTS
Cytogenetic Map	13	q26	UniSTS
Cytogenetic Map	10	q22	UniSTS
Cytogenetic Map	7	q11	UniSTS
Cytogenetic Map	8	q24	UniSTS
Cytogenetic Map	5	q21	UniSTS
Cytogenetic Map	4	q24	UniSTS
Cytogenetic Map	2	q11	UniSTS
Cytogenetic Map	1	q54	UniSTS
Cytogenetic Map	1	q36	UniSTS
Cytogenetic Map	18	p11	UniSTS
Cytogenetic Map	13	q13	UniSTS
Cytogenetic Map	10	q24	UniSTS
Cytogenetic Map	8	q31	UniSTS
Cytogenetic Map	3	q21	UniSTS
Cytogenetic Map	13	p13	UniSTS
Cytogenetic Map	1	q21	UniSTS
Cytogenetic Map	11	q23	UniSTS
Cytogenetic Map	10	q31	UniSTS
Cytogenetic Map	16	q12.2	UniSTS
Cytogenetic Map	3	q24	UniSTS
Cytogenetic Map	5	q36	UniSTS
Cytogenetic Map	3	p13	UniSTS

BE104182

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	10	83,311,761 - 83,311,919	NCBI	Rnor6.0
Rnor_5.0	10	83,121,675 - 83,121,833	UniSTS	Rnor5.0
RGSC_v3.4	10	84,185,298 - 84,185,456	UniSTS	RGSC3.4
Celera	10	79,210,309 - 79,210,467	UniSTS
RH 3.4 Map	10	745.3	UniSTS
Cytogenetic Map	10	q31	UniSTS

MARC_9787-9788:996688611:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	10	83,289,985 - 83,290,667	NCBI	Rnor6.0
Rnor_5.0	10	83,099,899 - 83,100,581	UniSTS	Rnor5.0
RGSC_v3.4	10	84,163,522 - 84,164,204	UniSTS	RGSC3.4
Celera	10	79,188,532 - 79,189,214	UniSTS
Cytogenetic Map	10	q31	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6429075	99492409	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9841807	108540162	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14827894	92423564	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14827894	107857673	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14827894	110992275	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	20170031	102897474	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	21523906	83549467	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	21523906	90312401	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	21523906	90312401	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	21523906	90312401	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	21523906	90312401	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	21523906	90312401	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22901497	93886300	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	23861015	112626471	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24483076	107857673	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24483076	107857673	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24483076	107857673	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27237530	101482600	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27237530	102427718	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	36185929	95845311	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	40514044	85514044	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	40514044	85514044	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	41260363	106105607	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	41260363	107857673	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	41260363	107857673	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	43289657	108540162	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	43704955	88704955	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	46593021	98939209	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	46848346	91848346	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	46848346	91848346	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	46848346	91848346	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	50638337	95638337	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	51289203	84596393	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	51289203	84596393	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	51289203	84596393	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	10	51289203	84596393	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	51289203	84596393	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	53104718	98104718	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	53621375	112626471	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	53621375	112626471	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	53625815	98939209	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	53637485	94807701	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	55224855	100224855	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	55678976	112626471	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	55679084	102427604	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	56698730	101698730	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	60450007	105450007	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	60875260	105875260	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	60875260	105875260	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	60875260	105875260	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	62096293	107096293	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	64648175	84601269	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	64648175	101691360	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	64648175	102149713	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	64648175	102149713	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	64648311	85513822	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	65590122	110590122	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	65992275	110992275	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	65992275	110992275	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	67880046	112626471	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	67988218	110992091	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	68305037	85514044	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	69123603	101482600	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	69385595	112626471	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	69385595	112626471	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	70166960	112626471	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	70800069	112626471	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	71692298	112626471	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	73008136	112626471	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	73008136	112626471	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	73008136	112626471	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	73467158	112626471	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	75045391	97308358	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	75544754	112626471	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	75544754	112626471	Rat
12880053	Cm104	Cardiac mass QTL 104		0.009	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	75983662	86419171	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	75983805	99492217	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	75983805	99492217	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	77055741	86962563	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	77055741	98282519	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	78343027	90042115	Rat
2325836	Bp346	Blood pressure QTL 346		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	78970279	86962563	Rat
10450495	Bp383	Blood pressure QTL 383		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	78970279	98282519	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	78970279	112626471	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	79927661	112626471	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	80239190	112626471	Rat
724516	Uae17	Urinary albumin excretion QTL 17	3.6		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	80946110	88200662	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	81515116	101758478	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	81649775	90297007	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	82675233	88141097	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	130
Count of miRNA genes:	98
Interacting mature miRNAs:	117
Transcripts:	ENSRNOT00000006230
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000006230 ⟹ ENSRNOP00000006230

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	83,231,409 - 83,311,592 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000077625 ⟹ ENSRNOP00000072808

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	83,231,238 - 83,310,660 (+)	Ensembl

RefSeq Acc Id:

NM_001100496 ⟹ NP_001093966

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	80,358,160 - 80,438,983 (+)	NCBI
Rnor_6.0	10	83,231,409 - 83,311,593 (+)	NCBI
Rnor_5.0	10	83,040,592 - 83,121,901 (+)	NCBI
RGSC_v3.4	10	84,099,990 - 84,185,130 (+)	RGD
Celera	10	79,129,126 - 79,210,141 (+)	RGD

Sequence:

show sequence

GTGTATCGGCGGTCCCGCAGGTCCCGGATGTTGCGGGCAGTATGAGGCGAGCGCAGGGGGACAG
GGACCAGCAGCTGTCGCCGCCGTTCTCAGGGTGAAGAAAGACCAGAAATCTTTGCCCCCTGACT
TTGGAGACCCAGTTTAACCTTCAAACTGGCGATGTCAAGGGTTCCAAGTCCTCCACCTCCGGCA
GAAATGTCGAGTGGTCCTGTTGCTGAGAGCTGGTGCTATACACAGATCAAGGTAGTGAAGTTCT
CCTACATGTGGACCATCAATAACTTTAGTTTTTGCCGGGAGGAAATGGGTGAAGTCATAAAAAG
TTCAACTTTTTCATCAGGAGCCAATGATAAGCTGAAATGGTGTTTGCGAGTAAACCCGAAGGGG
CTGGATGAGGAAAGCAAAGATTACCTGTCGCTCTACCTGTTGTTGGTCAGCTGTCCAAAGAGTG
AGGTTCGGGCCAAGTTCAAGTTCTCCATCCTGAATGCCAAGGGAGAAGAAACCAAAGCTATGGA
GAGCCAGCGAGCTTATAGGTTCGTGCAAGGCAAAGACTGGGGATTCAAAAAATTCATCCGTAGA
GATTTTCTCTTGGACGAGGCCAATGGACTTCTCCCTGATGACAAGCTCACCCTCTTCTGCGAGG
TGAGTGTAGTCCAAGACTCTGTCAATATCTCTGGGCAGAATACTATGAACATGGTAAAGGTCCC
TGAATGCCGGTTGGCTGACGAGTTAGGAGGGCTGTGGGAGAACTCTCGATTCACAGACTGCTGC
TTGTGTGTGGCTGGCCAAGAATTCCAGGCTCACAAGGCTATCTTAGCAGCTCGGTCTCCAGTTT
TCAGTGCCATGTTTGAACATGAAATGGAGGAGAGCAAAAAGAATCGGGTTGAAATTAACGATGT
AGAACCTGAAGTTTTTAAGGAAATGATGTGCTTCATCTACACGGGGAAGGCACCAAACCTTGAC
AAAATGGCTGATGATTTGCTGGCAGCTGCTGACAAGTACGCCCTGGAGCGTTTGAAGGTCATGT
GCGAGGATGCCCTCTGCAGTAACCTCTCTGTGGAGAACGCTGCAGAGATTCTCATCCTGGCTGA
CCTCCACAGCGCAGATCAGCTGAAAACCCAGGCAGTGGATTTCATCAACTATCATGCTTCGGAT
GTCTTGGAGACCTCTGGGTGGAAGTCAATGGTGGTGTCACATCCCCACTTAGTGGCAGAAGCGT
ACCGCTCTCTGGCTTCCGCACAATGCCCTTTCCTGGGGCCCCCGCGCAAACGCCTGAAGCAATC
CTAAGATCCTGCCTGTTGGGAGACTCCATTCATTTTCCAGCAGCAGCAGCCACCGTTGCTGCCA
CTGACTGCCAGGTAGACCGCGCGGTCTGTGCGGCTTTTACTCTGTGTCGGGGGAGATGGCACCA
TGGCCACCCAGACTTTAACAGCACTAAATAACTTAGGGGAGCTGGGGGAGGGAAGGGCCCAGGA
CTCGGGCCACTCAGCCTAATGAAACCCTGTTGCTCTGTCACCGTGTGCCCTTTGGCCTGACCAA
GTTTGACACTGGGATTCAGTTTAGGCGCCAGCCTCAAGCACATCCCAGCAGTGGTACTTCGGAG
AAATCAGCATCTGACTGAGCAGAACAAATCGTCAGGTGCCTGGAGCAAAAAGGAAAAAAAAAGC
AGAAACAAGTGGACATTTAGTTTTAAGAGATGGAAAAAGGAAAGAAGAAAGATTTTTTTTCGAA
AATCAGTTTGTGGATTCCAGTAGTATTTATGTTGAAAGAAGCAAATTTTAGTTCAACTGTGGAT
ATTTGTGAAAACTCCTCACCACCACCCAAGTGTCAGAAGAGCTCTCTCGCTAGCACTTACTGTT
TGCAAGAAGCCATCCTTTATCCTCTGAAAGGTGGCCCATGGCGGCAGAAGGGAGGAAGTCATCT
GATCTGGAAAGCGAGTGTTTGACAGTAGTGGCTTCTGCAGAAATTCTTACTGGTATTAAAAACT
GGAAAAAATAATTCATCCAGAATTCATACTGTCTTGATAAAAACTATGATTCTGTTTTTTAGAT
ATCGTGGAAAATGGATTTTTTTGGCATTTTTCTCTGATTTTATGTTTTCTTCCCTTCCCTTTTT
CTGAGAGAGAGGGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAAAGAGAGGAGAAACAAATACAGAAAATACATAAAACGAAAAGAAGAGAAAAGG
AAATTTTATTATTATTGCTATGTGAAAAAAAATCTCAGCCCAGATGGCCTGGCTGTTTGTACCT
GACTCGTCGCCTGCATAGGAGCCGGTCCTGTCACTTCTGATTAGCCCCTCTTCCAAAGGGGAGA
CTTCAAATGTTAACTTTTTCTTTTTGAAAATATAAATAATTACTATTTTGTACTGTGTGGTAAA
AAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006247180 ⟹ XP_006247242

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	83,234,711 - 83,311,987 (+)	NCBI
Rnor_5.0	10	83,040,592 - 83,121,901 (+)	NCBI

Sequence:

show sequence

TAAAAATCTTATGCAGTGTTTTCTCTTTTCTGTTAAGCTCTTGTATAGTTTCATAAATTTCATT
ACACTGAGGAGTTATGGACAAACTCTGTGCCTGTTTTGTACTTCGAGAGTATTAGGGGACACTC
TTCTATGAAAGAATGATGCATAGGGACATAGCCTGGGTAACAACAAACCCATGGCATTTCCAGG
AAGGCCTATGAGACCTGAATTCCAGTTTCCTCATCTTCACTCTCAGTCTGGTTTGTGTGGAACT
CCAAAAGCTTATGTGTTCTTTTGTGATATCATCTTGGTAGCTATGAGCAAAGGCCAATGAGCTG
CTTTTTGTTGAGTTGAAAAAATAACTCAGTAGCTAAGATACTTTACTAAGTGTCTATTTTCTCA
GCAGAATGTTGGCCTTAGCAGTCTTCTGACTGCAGAATACCTTATTATGAGCTGTAAAGAGAGA
AAAGGCTGGGTATGATGGAGCACACCTTTAATCTCAGTACTCAAGAGGCAGAAGCAGGCAGATC
AATGTGGGTTTAAGGCCAGCTAGAACTTCATAGTGAGACCCCTACCTCTCCCAGCTCCAGCCCC
ACAAAAAAGAATGAATGAATGAATGAATGAATGAATGAATGAAGAGATGTCTGTACCTGAAGGA
GATTGTGGTCTAACAAGATGCACTGACTATGAAATGAGTCAGAAAATAAAGTGTAAATAATACT
ATGCTTATGTTCTCTGAGATGTGATGAAGGATTGAGAGAGTTTGCTTGGAGGGCTTTCTGAGGG
AGGAAGTGTATGCTGAGGTGTGTGTTGTTTGCTTTTCTTCTACTATTGAAAGTTCAAACATACA
GAAAAGTAGAGAGAAATTTCCTGCTAGACAAGAAAAATTAGAGTTTTCCTACAGATTTGACTTG
GGTGAAGAAAGACCAGAAATCTTTGCCCCCTGACTTTGGAGACCCAGTTTAACCTTCAAACTGG
CGATGTCAAGGGTTCCAAGTCCTCCACCTCCGGCAGAAATGTCGAGTGGTCCTGTTGCTGAGAG
CTGGTGCTATACACAGATCAAGGTAGTGAAGTTCTCCTACATGTGGACCATCAATAACTTTAGT
TTTTGCCGGGAGGAAATGGGTGAAGTCATAAAAAGTTCAACTTTTTCATCAGGAGCCAATGATA
AGCTGAAATGGTGTTTGCGAGTAAACCCGAAGGGGCTGGATGAGGAAAGCAAAGATTACCTGTC
GCTCTACCTGTTGTTGGTCAGCTGTCCAAAGAGTGAGGTTCGGGCCAAGTTCAAGTTCTCCATC
CTGAATGCCAAGGGAGAAGAAACCAAAGCTATGGAGAGCCAGCGAGCTTATAGGTTCGTGCAAG
GCAAAGACTGGGGATTCAAAAAATTCATCCGTAGAGATTTTCTCTTGGACGAGGCCAATGGACT
TCTCCCTGATGACAAGCTCACCCTCTTCTGCGAGGTGAGTGTAGTCCAAGACTCTGTCAATATC
TCTGGGCAGAACACTATGAACATGGTAAAGGTCCCTGAATGCCGGTTGGCTGACGAGTTAGGAG
GGCTGTGGGAGAACTCTCGATTCACAGACTGCTGCTTGTGTGTGGCTGGCCAAGAATTCCAGGC
TCACAAGGCTATCTTAGCAGCTCGGTCTCCAGTTTTCAGTGCCATGTTTGAACATGAAATGGAG
GAGAGCAAAAAGAATCGGGTTGAAATTAACGATGTAGAACCTGAAGTTTTTAAGGAAATGATGT
GCTTCATCTACACGGGGAAGGCACCAAACCTTGACAAAATGGCTGATGATTTGCTGGCAGCTGC
TGACAAGTACGCCCTGGAGCGTTTGAAGGTCATGTGCGAGGATGCCCTCTGCAGTAACCTCTCT
GTGGAGAACGCTGCAGAGATTCTCATCCTGGCTGACCTCCACAGCGCAGATCAGCTGAAAACCC
AGGCAGTGGATTTCATCAACTATCATGCTTCGGATGTCTTGGAGACCTCTGGGTGGAAGTCAAT
GGTGGTGTCACATCCCCACTTAGTGGCAGAAGCGTACCGCTCTCTGGCTTCCGCACAATGCCCT
TTCCTGGGGCCCCCGCGCAAACGCCTGAAGCAATCCTAAGATCCTGCCTGTTGGGAGACTCCAT
TCATTTTCCAGCAGCAGCAGCCACCGTTGCTGCCACTGACTGCCAGGTAGACCGCGCGGTCTGT
GCGGCTTTTACTCTGTGTCGGGGGAGATGGCACCATGGCCACCCAGACTTTAACAGCACTAAAT
AACTTAGGGGAGCTGGGGGAGGGAAGGGCCCAGGACTCGGGCCACTCAGCCTAATGAAACCCTG
TTGCTCTGTCACCGTGTGCCCTTTGGCCTGACCAAGTTTGACACTGGGATTCAGTTTAGGCGCC
AGCCTCAAGCACATCCCAGCAGTGGTACTTCGGAGAAATCAGCATCTGACTGAGCAGAACAAAT
CGTCAGGTGCCTGGAGCAAAAAGGAAAAAAAAAGCAGAAACAAGTGGACATTTAGTTTTAAGAG
ATGGAAAAAGGAAAGAAGAAAGATTTTTTTTCGAAAATCAGTTTGTGGATTCCAGTAGTATTTA
TGTTGAAAGAAGCAAATTTTAGTTCAACTGTGGATATTTGTGAAAACTCCTCACCACCACCCAA
GTGTCAGAAGAGCTCTCTCGCTAGCACTTACTGTTTGCAAGAAGCCATCCTTTATCCTCTGAAA
GGTGGCCCATGGCGGCAGAAGGGAGGAAGTCATCTGATCTGGAAAGCGAGTGTTTGACAGTAGT
GGCTTCTGCAGAAATTCTTACTGGTATTAAAAACTGGAAAAAATAATTCATCCAGAATTCATAC
TGTCTTGATAAAAACTATGATTCTGTTTTTTAGATATCGTGGAAAATGGATTTTTTTGGCATTT
TTCTCTGATTTTATGTTTTCTTCCCTTCCCTTTTTCTGAGAGAGAGGGAGAGAGAGAGGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAAGAGAGGAGAAACAAATACAGAAAATACATAAA
ACGAAAAGAAGAGAAAAGGAAATTTTATTATTATTGCTATGTGAAAAAAAATCCCAGCCCAGAT
GGCCTGGCTGTTTGTACCTGACTCGTCGCCTGCATAGGAGCCGGTCCTGTCACTTCTGATTAGC
CCCTCTTCCAAAGGGGAGACTTCAAATGTTAACTTTTTCTTTTTGAAAATATAAATAATTACTA
TTTTGTACTGTGTGGTATCTCTGGTCTTTTGTTTCATTCACTTGGCTTGCCTCTTGGGTCTCAG
TTTCTTGCTTGTGAGATTTCGAAGCCCTGGTTTGAGCTTCGTCTTGCAGGGATTATGTTCAGAA
TGTCTAAGAAGCAGTAGGGAGTTATTTACTCTCCATAGTCTCAAGTTTTCTTTGTGAGCTCAGC
ATCTGCCAGTCTTTTGTCCTCCTTGAGGTTCTGCCAACCATGTCCTGGTGAGAGTCTGGGACCA
GGTCCCACTCCACCAAGGCAAACAATTGTAGTGGGCTTCTTCTGCACCCTGTGTGTGTTAATAC
CTGATCCCAAATCTCCTTTCTCCTAACAAAATAAAAAGAAATATTTAGGGGTCATGAACATGGA
GATTAAATAAAGGGAAATTGTTGTGTC

hide sequence

RefSeq Acc Id:

XM_006247182 ⟹ XP_006247244

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	83,231,187 - 83,311,987 (+)	NCBI
Rnor_5.0	10	83,040,592 - 83,121,901 (+)	NCBI

Sequence:

show sequence

CGGGAAGCCGGGGGAGGAGGCCGCGCGGGGTGGGGCCCGGCGGGTACGCGCTCGCTGCGTCGAC
GTGCTGACGACAGGACGCCCAGGCCGGTCCCGGATGTTGCGGGCAGTATGAGGCGAGCGCAGGG
GGACAGGGACCAGCAGCTGTCGCCGCCGTTCTCAGGGTGAAGAAAGACCAGAAATCTTTGCCCC
CTGACTTTGGAGACCCAGTTTAACCTTCAAACTGGCGATGTCAAGGGTTCCAAGTCCTCCACCT
CCGGCAGAAATGTCGAGTGGTCCTGTTGCTGAGAGCTGGTGCTATACACAGATCAAGGTAGTGA
AGTTCTCCTACATGTGGACCATCAATAACTTTAGTTTTTGCCGGGAGGAAATGGGTGAAGTCAT
AAAAAGTTCAACTTTTTCATCAGGAGCCAATGATAAGCTGAAATGGTGTTTGCGAGTAAACCCG
AAGGGGCTGGATGAGGAAAGCAAAGATTACCTGTCGCTCTACCTGTTGTTGGTCAGCTGTCCAA
AGAGTGAGGTTCGGGCCAAGTTCAAGTTCTCCATCCTGAATGCCAAGGGAGAAGAAACCAAAGC
TATGGAGAGCCAGCGAGCTTATAGGTTCGTGCAAGGCAAAGACTGGGGATTCAAAAAATTCATC
CGTAGAGATTTTCTCTTGGACGAGGCCAATGGACTTCTCCCTGATGACAAGCTCACCCTCTTCT
GCGAGGTGAGTGTAGTCCAAGACTCTGTCAATATCTCTGGGCAGAACACTATGAACATGGTAAA
GGTCCCTGAATGCCGGTTGGCTGACGAGTTAGGAGGGCTGTGGGAGAACTCTCGATTCACAGAC
TGCTGCTTGTGTGTGGCTGGCCAAGAATTCCAGGCTCACAAGGCTATCTTAGCAGCTCGGTCTC
CAGTTTTCAGTGCCATGTTTGAACATGAAATGGAGGAGAGCAAAAAGAATCGGGTTGAAATTAA
CGATGTAGAACCTGAAGTTTTTAAGGAAATGATGTGCTTCATCTACACGGGGAAGGCACCAAAC
CTTGACAAAATGGCTGATGATTTGCTGGCAGCTGCTGACAAGTACGCCCTGGAGCGTTTGAAGG
TCATGTGCGAGGATGCCCTCTGCAGTAACCTCTCTGTGGAGAACGCTGCAGAGATTCTCATCCT
GGCTGACCTCCACAGCGCAGATCAGCTGAAAACCCAGGCAGTGGATTTCATCAACTATCATGCT
TCGGATGTCTTGGAGACCTCTGGGTGGAAGTCAATGGTGGTGTCACATCCCCACTTAGTGGCAG
AAGCGTACCGCTCTCTGGCTTCCGCACAATGCCCTTTCCTGGGGCCCCCGCGCAAACGCCTGAA
GCAATCCTAAGATCCTGCCTGTTGGGAGACTCCATTCATTTTCCAGCAGCAGCAGCCACCGTTG
CTGCCACTGACTGCCAGGTAGACCGCGCGGTCTGTGCGGCTTTTACTCTGTGTCGGGGGAGATG
GCACCATGGCCACCCAGACTTTAACAGCACTAAATAACTTAGGGGAGCTGGGGGAGGGAAGGGC
CCAGGACTCGGGCCACTCAGCCTAATGAAACCCTGTTGCTCTGTCACCGTGTGCCCTTTGGCCT
GACCAAGTTTGACACTGGGATTCAGTTTAGGCGCCAGCCTCAAGCACATCCCAGCAGTGGTACT
TCGGAGAAATCAGCATCTGACTGAGCAGAACAAATCGTCAGGTGCCTGGAGCAAAAAGGAAAAA
AAAAGCAGAAACAAGTGGACATTTAGTTTTAAGAGATGGAAAAAGGAAAGAAGAAAGATTTTTT
TTCGAAAATCAGTTTGTGGATTCCAGTAGTATTTATGTTGAAAGAAGCAAATTTTAGTTCAACT
GTGGATATTTGTGAAAACTCCTCACCACCACCCAAGTGTCAGAAGAGCTCTCTCGCTAGCACTT
ACTGTTTGCAAGAAGCCATCCTTTATCCTCTGAAAGGTGGCCCATGGCGGCAGAAGGGAGGAAG
TCATCTGATCTGGAAAGCGAGTGTTTGACAGTAGTGGCTTCTGCAGAAATTCTTACTGGTATTA
AAAACTGGAAAAAATAATTCATCCAGAATTCATACTGTCTTGATAAAAACTATGATTCTGTTTT
TTAGATATCGTGGAAAATGGATTTTTTTGGCATTTTTCTCTGATTTTATGTTTTCTTCCCTTCC
CTTTTTCTGAGAGAGAGGGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAG
AAAGAGAGGAGAAACAAATACAGAAAATACATAAAACGAAAAGAAGAGAAAAGGAAATTTTATT
ATTATTGCTATGTGAAAAAAAATCCCAGCCCAGATGGCCTGGCTGTTTGTACCTGACTCGTCGC
CTGCATAGGAGCCGGTCCTGTCACTTCTGATTAGCCCCTCTTCCAAAGGGGAGACTTCAAATGT
TAACTTTTTCTTTTTGAAAATATAAATAATTACTATTTTGTACTGTGTGGTATCTCTGGTCTTT
TGTTTCATTCACTTGGCTTGCCTCTTGGGTCTCAGTTTCTTGCTTGTGAGATTTCGAAGCCCTG
GTTTGAGCTTCGTCTTGCAGGGATTATGTTCAGAATGTCTAAGAAGCAGTAGGGAGTTATTTAC
TCTCCATAGTCTCAAGTTTTCTTTGTGAGCTCAGCATCTGCCAGTCTTTTGTCCTCCTTGAGGT
TCTGCCAACCATGTCCTGGTGAGAGTCTGGGACCAGGTCCCACTCCACCAAGGCAAACAATTGT
AGTGGGCTTCTTCTGCACCCTGTGTGTGTTAATACCTGATCCCAAATCTCCTTTCTCCTAACAA
AATAAAAAGAAATATTTAGGGGTCATGAACATGGAGATTAAATAAAGGGAAATTGTTGTGTC

hide sequence

RefSeq Acc Id:

XM_008767968 ⟹ XP_008766190

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	80,358,171 - 80,438,977 (+)	NCBI
Rnor_6.0	10	83,231,304 - 83,311,987 (+)	NCBI

Sequence:

show sequence

TGTGTGTGTGTGTGTGGTGTGTGTGTGGTGTGTGTGGTGTGTGTGTGTGTATGTGTGTGTGTGT
GTGTGTGTTTGTATGTGTGTGCGCGCTCCAAGAGTGTATTTGTGTATCGGCGGTCCCGCAGGTC
CCGGATGTTGCGGGCAGTATGAGGCGAGCGCAGGGGGACAGGGACCAGCAGCTGTCGCCGCCGT
TCTCAGAAATTTCCTGCTAGACAAGAAAAATTAGAGTTTTCCTACAGATTTGACTTGGGTGAAG
AAAGACCAGAAATCTTTGCCCCCTGACTTTGGAGACCCAGTTTAACCTTCAAACTGGCGATGTC
AAGGGTTCCAAGTCCTCCACCTCCGGCAGAAATGTCGAGTGGTCCTGTTGCTGAGAGCTGGTGC
TATACACAGATCAAGGTAGTGAAGTTCTCCTACATGTGGACCATCAATAACTTTAGTTTTTGCC
GGGAGGAAATGGGTGAAGTCATAAAAAGTTCAACTTTTTCATCAGGAGCCAATGATAAGCTGAA
ATGGTGTTTGCGAGTAAACCCGAAGGGGCTGGATGAGGAAAGCAAAGATTACCTGTCGCTCTAC
CTGTTGTTGGTCAGCTGTCCAAAGAGTGAGGTTCGGGCCAAGTTCAAGTTCTCCATCCTGAATG
CCAAGGGAGAAGAAACCAAAGCTATGGAGAGCCAGCGAGCTTATAGGTTCGTGCAAGGCAAAGA
CTGGGGATTCAAAAAATTCATCCGTAGAGATTTTCTCTTGGACGAGGCCAATGGACTTCTCCCT
GATGACAAGCTCACCCTCTTCTGCGAGGTGAGTGTAGTCCAAGACTCTGTCAATATCTCTGGGC
AGAACACTATGAACATGGTAAAGGTCCCTGAATGCCGGTTGGCTGACGAGTTAGGAGGGCTGTG
GGAGAACTCTCGATTCACAGACTGCTGCTTGTGTGTGGCTGGCCAAGAATTCCAGGCTCACAAG
GCTATCTTAGCAGCTCGGTCTCCAGTTTTCAGTGCCATGTTTGAACATGAAATGGAGGAGAGCA
AAAAGAATCGGGTTGAAATTAACGATGTAGAACCTGAAGTTTTTAAGGAAATGATGTGCTTCAT
CTACACGGGGAAGGCACCAAACCTTGACAAAATGGCTGATGATTTGCTGGCAGCTGCTGACAAG
TACGCCCTGGAGCGTTTGAAGGTCATGTGCGAGGATGCCCTCTGCAGTAACCTCTCTGTGGAGA
ACGCTGCAGAGATTCTCATCCTGGCTGACCTCCACAGCGCAGATCAGCTGAAAACCCAGGCAGT
GGATTTCATCAACTATCATGCTTCGGATGTCTTGGAGACCTCTGGGTGGAAGTCAATGGTGGTG
TCACATCCCCACTTAGTGGCAGAAGCGTACCGCTCTCTGGCTTCCGCACAATGCCCTTTCCTGG
GGCCCCCGCGCAAACGCCTGAAGCAATCCTAAGATCCTGCCTGTTGGGAGACTCCATTCATTTT
CCAGCAGCAGCAGCCACCGTTGCTGCCACTGACTGCCAGGTAGACCGCGCGGTCTGTGCGGCTT
TTACTCTGTGTCGGGGGAGATGGCACCATGGCCACCCAGACTTTAACAGCACTAAATAACTTAG
GGGAGCTGGGGGAGGGAAGGGCCCAGGACTCGGGCCACTCAGCCTAATGAAACCCTGTTGCTCT
GTCACCGTGTGCCCTTTGGCCTGACCAAGTTTGACACTGGGATTCAGTTTAGGCGCCAGCCTCA
AGCACATCCCAGCAGTGGTACTTCGGAGAAATCAGCATCTGACTGAGCAGAACAAATCGTCAGG
TGCCTGGAGCAAAAAGGAAAAAAAAAGCAGAAACAAGTGGACATTTAGTTTTAAGAGATGGAAA
AAGGAAAGAAGAAAGATTTTTTTTCGAAAATCAGTTTGTGGATTCCAGTAGTATTTATGTTGAA
AGAAGCAAATTTTAGTTCAACTGTGGATATTTGTGAAAACTCCTCACCACCACCCAAGTGTCAG
AAGAGCTCTCTCGCTAGCACTTACTGTTTGCAAGAAGCCATCCTTTATCCTCTGAAAGGTGGCC
CATGGCGGCAGAAGGGAGGAAGTCATCTGATCTGGAAAGCGAGTGTTTGACAGTAGTGGCTTCT
GCAGAAATTCTTACTGGTATTAAAAACTGGAAAAAATAATTCATCCAGAATTCATACTGTCTTG
ATAAAAACTATGATTCTGTTTTTTAGATATCGTGGAAAATGGATTTTTTTGGCATTTTTCTCTG
ATTTTATGTTTTCTTCCCTTCCCTTTTTCTGAGAGAGAGGGAGAGAGAGAGGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAAAGAGAAAGAGAGGAGAAACAAATACAGAAAATACATAAAACGAAAA
GAAGAGAAAAGGAAATTTTATTATTATTGCTATGTGAAAAAAAATCCCAGCCCAGATGGCCTGG
CTGTTTGTACCTGACTCGTCGCCTGCATAGGAGCCGGTCCTGTCACTTCTGATTAGCCCCTCTT
CCAAAGGGGAGACTTCAAATGTTAACTTTTTCTTTTTGAAAATATAAATAATTACTATTTTGTA
CTGTGTGGTATCTCTGGTCTTTTGTTTCATTCACTTGGCTTGCCTCTTGGGTCTCAGTTTCTTG
CTTGTGAGATTTCGAAGCCCTGGTTTGAGCTTCGTCTTGCAGGGATTATGTTCAGAATGTCTAA
GAAGCAGTAGGGAGTTATTTACTCTCCATAGTCTCAAGTTTTCTTTGTGAGCTCAGCATCTGCC
AGTCTTTTGTCCTCCTTGAGGTTCTGCCAACCATGTCCTGGTGAGAGTCTGGGACCAGGTCCCA
CTCCACCAAGGCAAACAATTGTAGTGGGCTTCTTCTGCACCCTGTGTGTGTTAATACCTGATCC
CAAATCTCCTTTCTCCTAACAAAATAAAAAGAAATATTTAGGGGTCATGAACATGGAGATTAAA
TAAAGGGAAATTGTTGTGTC

hide sequence

RefSeq Acc Id:

XM_017597130 ⟹ XP_017452619

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	80,358,165 - 80,438,977 (+)	NCBI
Rnor_6.0	10	83,231,268 - 83,311,987 (+)	NCBI

Sequence:

show sequence

CCCAGGCCGGTGTGTGTCGGTCCCGGATGTTGCGGGCAGTATGAGGCGAGCGCAGGGGGACAGG
GACCAGCAGCTGTCGCCGCCGTTCTCAGGGTGAAGAAAGACCAGAAATCTTTGCCCCCTGACTT
TGGAGACCCAGTTTAACCTTCAAACTGGCGATGTCAAGGGTTCCAAGTCCTCCACCTCCGGCAG
AAATGTCGAGTGGTCCTGTTGCTGAGAGCTGGTGCTATACACAGATCAAGGTAGTGAAGTTCTC
CTACATGTGGACCATCAATAACTTTAGTTTTTGCCGGGAGGAAATGGGTGAAGTCATAAAAAGT
TCAACTTTTTCATCAGGAGCCAATGATAAGCTGAAATGGTGTTTGCGAGTAAACCCGAAGGGGC
TGGATGAGGAAAGCAAAGATTACCTGTCGCTCTACCTGTTGTTGGTCAGCTGTCCAAAGAGTGA
GGTTCGGGCCAAGTTCAAGTTCTCCATCCTGAATGCCAAGGGAGAAGAAACCAAAGCTATGGAG
AGCCAGCGAGCTTATAGGTTCGTGCAAGGCAAAGACTGGGGATTCAAAAAATTCATCCGTAGAG
ATTTTCTCTTGGACGAGGCCAATGGACTTCTCCCTGATGACAAGCTCACCCTCTTCTGCGAGGT
GAGTGTAGTCCAAGACTCTGTCAATATCTCTGGGCAGAACACTATGAACATGGTAAAGGTCCCT
GAATGCCGGTTGGCTGACGAGTTAGGAGGGCTGTGGGAGAACTCTCGATTCACAGACTGCTGCT
TGTGTGTGGCTGGCCAAGAATTCCAGGCTCACAAGGCTATCTTAGCAGCTCGGTCTCCAGTTTT
CAGTGCCATGTTTGAACATGAAATGGAGGAGAGCAAAAAGAATCGGGTTGAAATTAACGATGTA
GAACCTGAAGTTTTTAAGGAAATGATGTGCTTCATCTACACGGGGAAGGCACCAAACCTTGACA
AAATGGCTGATGATTTGCTGGCAGCTGCTGACAAGTACGCCCTGGAGCGTTTGAAGGTCATGTG
CGAGGATGCCCTCTGCAGTAACCTCTCTGTGGAGAACGCTGCAGAGATTCTCATCCTGGCTGAC
CTCCACAGCGCAGATCAGCTGAAAACCCAGGCAGTGGATTTCATCAACTATCATGCTTCGGATG
TCTTGGAGACCTCTGGGTGGAAGTCAATGGTGGTGTCACATCCCCACTTAGTGGCAGAAGCGTA
CCGCTCTCTGGCTTCCGCACAATGCCCTTTCCTGGGGCCCCCGCGCAAACGCCTGAAGCAATCC
TAAGATCCTGCCTGTTGGGAGACTCCATTCATTTTCCAGCAGCAGCAGCCACCGTTGCTGCCAC
TGACTGCCAGGTAGACCGCGCGGTCTGTGCGGCTTTTACTCTGTGTCGGGGGAGATGGCACCAT
GGCCACCCAGACTTTAACAGCACTAAATAACTTAGGGGAGCTGGGGGAGGGAAGGGCCCAGGAC
TCGGGCCACTCAGCCTAATGAAACCCTGTTGCTCTGTCACCGTGTGCCCTTTGGCCTGACCAAG
TTTGACACTGGGATTCAGTTTAGGCGCCAGCCTCAAGCACATCCCAGCAGTGGTACTTCGGAGA
AATCAGCATCTGACTGAGCAGAACAAATCGTCAGGTGCCTGGAGCAAAAAGGAAAAAAAAAGCA
GAAACAAGTGGACATTTAGTTTTAAGAGATGGAAAAAGGAAAGAAGAAAGATTTTTTTTCGAAA
ATCAGTTTGTGGATTCCAGTAGTATTTATGTTGAAAGAAGCAAATTTTAGTTCAACTGTGGATA
TTTGTGAAAACTCCTCACCACCACCCAAGTGTCAGAAGAGCTCTCTCGCTAGCACTTACTGTTT
GCAAGAAGCCATCCTTTATCCTCTGAAAGGTGGCCCATGGCGGCAGAAGGGAGGAAGTCATCTG
ATCTGGAAAGCGAGTGTTTGACAGTAGTGGCTTCTGCAGAAATTCTTACTGGTATTAAAAACTG
GAAAAAATAATTCATCCAGAATTCATACTGTCTTGATAAAAACTATGATTCTGTTTTTTAGATA
TCGTGGAAAATGGATTTTTTTGGCATTTTTCTCTGATTTTATGTTTTCTTCCCTTCCCTTTTTC
TGAGAGAGAGGGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAAGAGA
GGAGAAACAAATACAGAAAATACATAAAACGAAAAGAAGAGAAAAGGAAATTTTATTATTATTG
CTATGTGAAAAAAAATCCCAGCCCAGATGGCCTGGCTGTTTGTACCTGACTCGTCGCCTGCATA
GGAGCCGGTCCTGTCACTTCTGATTAGCCCCTCTTCCAAAGGGGAGACTTCAAATGTTAACTTT
TTCTTTTTGAAAATATAAATAATTACTATTTTGTACTGTGTGGTATCTCTGGTCTTTTGTTTCA
TTCACTTGGCTTGCCTCTTGGGTCTCAGTTTCTTGCTTGTGAGATTTCGAAGCCCTGGTTTGAG
CTTCGTCTTGCAGGGATTATGTTCAGAATGTCTAAGAAGCAGTAGGGAGTTATTTACTCTCCAT
AGTCTCAAGTTTTCTTTGTGAGCTCAGCATCTGCCAGTCTTTTGTCCTCCTTGAGGTTCTGCCA
ACCATGTCCTGGTGAGAGTCTGGGACCAGGTCCCACTCCACCAAGGCAAACAATTGTAGTGGGC
TTCTTCTGCACCCTGTGTGTGTTAATACCTGATCCCAAATCTCCTTTCTCCTAACAAAATAAAA
AGAAATATTTAGGGGTCATGAACATGGAGATTAAATAAAGGGAAATTGTTGTGTC

hide sequence

RefSeq Acc Id:

XM_039085592 ⟹ XP_038941520

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	80,358,165 - 80,438,977 (+)	NCBI

RefSeq Acc Id:

XM_039085593 ⟹ XP_038941521

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	80,402,224 - 80,438,977 (+)	NCBI

RefSeq Acc Id:

XM_039085594 ⟹ XP_038941522

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	80,402,157 - 80,438,977 (+)	NCBI

RefSeq Acc Id:

XM_039085596 ⟹ XP_038941524

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	80,358,121 - 80,438,977 (+)	NCBI

RefSeq Acc Id:

XM_039085597 ⟹ XP_038941525

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	80,358,165 - 80,438,977 (+)	NCBI

RefSeq Acc Id:

XM_039085598 ⟹ XP_038941526

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	80,379,632 - 80,438,977 (+)	NCBI

RefSeq Acc Id:

XM_039085599 ⟹ XP_038941527

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	80,362,460 - 80,438,977 (+)	NCBI

RefSeq Acc Id:

XM_039085600 ⟹ XP_038941528

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	80,358,219 - 80,438,977 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001093966	(Get FASTA)	NCBI Sequence Viewer
	XP_008766190	(Get FASTA)	NCBI Sequence Viewer
	XP_017452619	(Get FASTA)	NCBI Sequence Viewer
	XP_038941520	(Get FASTA)	NCBI Sequence Viewer
	XP_038941521	(Get FASTA)	NCBI Sequence Viewer
	XP_038941522	(Get FASTA)	NCBI Sequence Viewer
	XP_038941524	(Get FASTA)	NCBI Sequence Viewer
	XP_038941525	(Get FASTA)	NCBI Sequence Viewer
	XP_038941526	(Get FASTA)	NCBI Sequence Viewer
	XP_038941527	(Get FASTA)	NCBI Sequence Viewer
	XP_038941528	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91435	(Get FASTA)	NCBI Sequence Viewer
	AAI66743	(Get FASTA)	NCBI Sequence Viewer
	EDM05757	(Get FASTA)	NCBI Sequence Viewer
	EDM05758	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001093966 ⟸ NM_001100496

- UniProtKB:

B2RYD9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDK
LKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQG
KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGG
LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC
FIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQ
AVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS

hide sequence

RefSeq Acc Id:

XP_006247244 ⟸ XM_006247182

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDK
LKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQG
KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGG
LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC
FIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQ
AVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS

hide sequence

RefSeq Acc Id:

XP_006247242 ⟸ XM_006247180

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDK
LKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQG
KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGG
LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC
FIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQ
AVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS

hide sequence

RefSeq Acc Id:	XP_008766190 ⟸ XM_008767968
- Peptide Label:	isoform X1
- UniProtKB:	B2RYD9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDK LKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQG KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGG LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC FIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQ AVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS hide sequence

RefSeq Acc Id:	XP_017452619 ⟸ XM_017597130
- Peptide Label:	isoform X1
- UniProtKB:	B2RYD9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDK LKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQG KDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGG LWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMC FIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQ AVDFINYHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS hide sequence

RefSeq Acc Id:

ENSRNOP00000006230 ⟸ ENSRNOT00000006230

RefSeq Acc Id:

ENSRNOP00000072808 ⟸ ENSRNOT00000077625

RefSeq Acc Id:	XP_038941524 ⟸ XM_039085596
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038941520 ⟸ XM_039085592
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038941525 ⟸ XM_039085597
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038941528 ⟸ XM_039085600
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038941527 ⟸ XM_039085599
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038941526 ⟸ XM_039085598
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038941522 ⟸ XM_039085594
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038941521 ⟸ XM_039085593
- Peptide Label:	isoform X1

Protein Domains

BTB MATH

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697630

Promoter ID:

EPDNEW_R8144

Type:

initiation region

Name:

Spop_1

Description:

speckle type BTB/POZ protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	83,231,263 - 83,231,323	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311613	AgrOrtholog
Ensembl Genes	ENSRNOG00000004686	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000006230	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000072808	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006230	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000077625	UniProtKB/TrEMBL
Gene3D-CATH	2.60.210.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7368091	IMAGE-MGC_LOAD
	IMAGE:7938440	IMAGE-MGC_LOAD
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	MATH	UniProtKB/TrEMBL
	SPOP_C	UniProtKB/TrEMBL
	TRAF-like	UniProtKB/TrEMBL
KEGG Report	rno:287643	UniProtKB/TrEMBL
MGC_CLONE	MGC:109643	IMAGE-MGC_LOAD
	MGC:188472	IMAGE-MGC_LOAD
NCBI Gene	287643	ENTREZGENE
Pfam	BTB	UniProtKB/TrEMBL
	MATH	UniProtKB/TrEMBL
PhenoGen	Spop	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	MATH	UniProtKB/TrEMBL
SMART	BTB	UniProtKB/TrEMBL
	MATH	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	Traf_like	UniProtKB/TrEMBL
UniProt	B2RYD9	ENTREZGENE, UniProtKB/TrEMBL
	Q5BJL3_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Spop	speckle type BTB/POZ protein	Spop	speckle-type POZ protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Spop	speckle-type POZ protein	Spop_predicted	speckle-type POZ protein (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Spop_predicted	speckle-type POZ protein (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)