Akap1 (A-kinase anchoring protein 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Akap1 (A-kinase anchoring protein 1) Rattus norvegicus
Analyze
Symbol: Akap1
Name: A-kinase anchoring protein 1
RGD ID: 620826
Description: Enables several functions, including enzyme binding activity; protein kinase A regulatory subunit binding activity; and tubulin binding activity. Involved in several processes, including cellular response to cAMP; negative regulation of cell growth involved in cardiac muscle cell development; and negative regulation of protein import into nucleus. Located in lipid droplet; mitochondrial crista; and postsynaptic membrane. Is active in neuromuscular junction and postsynaptic specialization, intracellular component. Biomarker of brain ischemia. Orthologous to human AKAP1 (A-kinase anchoring protein 1); PARTICIPATES IN protein kinase A (PKA) signaling pathway; vascular endothelial growth factor signaling pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: A kinase (PRKA) anchor protein 1; a kinase anchor protein 1, mitochondrial; A-kinase anchor protein 1, mitochondrial; A-kinase anchor protein 121 kDa; AKAP 121; Akap84; D-AKAP-1; dual specificity A-kinase-anchoring protein 1; PRKA1; protein kinase A-anchoring protein 1; S-AKAP84; spermatid A-kinase anchor protein 84
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Bmd4
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81074,118,232 - 74,151,366 (-)NCBIGRCr8
mRatBN7.21073,621,021 - 73,654,123 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,621,883 - 73,653,896 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1078,236,555 - 78,250,887 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01077,741,478 - 77,755,810 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01073,204,658 - 73,218,993 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01076,151,013 - 76,183,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1076,151,038 - 76,166,276 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01073,927,523 - 73,960,524 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41077,262,592 - 77,276,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11077,276,968 - 77,291,202 (-)NCBI
Celera1072,528,421 - 72,542,825 (-)NCBICelera
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
celecoxib  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
cyproconazole  (ISO)
DDE  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenvalerate  (EXP)
finasteride  (EXP)
flavonoids  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glutathione  (EXP)
hexadecanoic acid  (ISO)
isoprenaline  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
progesterone  (EXP)
propiconazole  (ISO)
raloxifene  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulindac  (EXP)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The A-kinase anchor protein AKAP121 is a negative regulator of cardiomyocyte hypertrophy. Abrenica B, etal., J Mol Cell Cardiol. 2009 May;46(5):674-81.
2. Identification and characterization of D-AKAP1 as a major adipocyte PKA and PP1 binding protein. Bridges D, etal., Biochem Biophys Res Commun. 2006 Jul 21;346(1):351-7. Epub 2006 Jun 2.
3. A-kinase anchor protein 84/121 are targeted to mitochondria and mitotic spindles by overlapping amino-terminal motifs. Cardone L, etal., J Mol Biol. 2002 Jul 12;320(3):663-75.
4. Proteolysis of AKAP121 regulates mitochondrial activity during cellular hypoxia and brain ischaemia. Carlucci A, etal., EMBO J. 2008 Apr 9;27(7):1073-84. Epub 2008 Mar 6.
5. A-kinase anchoring proteins: from protein complexes to physiology and disease. Carnegie GK, etal., IUBMB Life. 2009 Apr;61(4):394-406.
6. Organelle-specific targeting of protein kinase AII (PKAII). Molecular and in situ characterization of murine A kinase anchor proteins that recruit regulatory subunits of PKAII to the cytoplasmic surface of mitochondria. Chen Q, etal., J Biol Chem 1997 Jun 13;272(24):15247-57.
7. Expression of a kinase anchor protein 121 is regulated by hormones in thyroid and testicular germ cells. Feliciello A, etal., J Biol Chem. 1998 Sep 4;273(36):23361-6.
8. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
9. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
10. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
11. PKA, PKC, and AKAP localization in and around the neuromuscular junction. Perkins GA, etal., BMC Neurosci. 2001;2:17. Epub 2001 Oct 23.
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Occurrence of A-kinase anchor protein and associated cAMP-dependent protein kinase in the inner compartment of mammalian mitochondria. Sardanelli AM, etal., FEBS Lett. 2006 Oct 16;580(24):5690-6. Epub 2006 Sep 18.
16. Localized effects of cAMP mediated by distinct routes of protein kinase A. Tasken K and Aandahl EM, Physiol Rev. 2004 Jan;84(1):137-67.
17. AAT-1, a novel testis-specific AMY-1-binding protein, forms a quaternary complex with AMY-1, A-kinase anchor protein 84, and a regulatory subunit of cAMP-dependent protein kinase and is phosphorylated by its kinase. Yukitake H, etal., J Biol Chem. 2002 Nov 22;277(47):45480-92. Epub 2002 Sep 9.
Additional References at PubMed
PMID:12477932   PMID:14651853   PMID:15143158   PMID:17537920   PMID:17911601   PMID:18614015   PMID:19946888   PMID:20511238   PMID:21526220   PMID:22658674   PMID:22681889   PMID:32108342  
PMID:38850669  


Genomics

Comparative Map Data
Akap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81074,118,232 - 74,151,366 (-)NCBIGRCr8
mRatBN7.21073,621,021 - 73,654,123 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,621,883 - 73,653,896 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1078,236,555 - 78,250,887 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01077,741,478 - 77,755,810 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01073,204,658 - 73,218,993 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01076,151,013 - 76,183,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1076,151,038 - 76,166,276 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01073,927,523 - 73,960,524 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41077,262,592 - 77,276,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11077,276,968 - 77,291,202 (-)NCBI
Celera1072,528,421 - 72,542,825 (-)NCBICelera
Cytogenetic Map10q26NCBI
AKAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381757,085,246 - 57,121,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1757,085,092 - 57,121,346 (+)EnsemblGRCh38hg38GRCh38
GRCh371755,162,607 - 55,198,705 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361752,517,552 - 52,553,709 (+)NCBINCBI36Build 36hg18NCBI36
Build 341752,529,085 - 52,553,608NCBI
Celera1751,624,091 - 51,660,266 (+)NCBICelera
Cytogenetic Map17q22ENTREZGENE
HuRef1750,523,434 - 50,559,589 (+)NCBIHuRef
CHM1_11755,227,656 - 55,263,814 (+)NCBICHM1_1
T2T-CHM13v2.01757,959,590 - 57,995,715 (+)NCBIT2T-CHM13v2.0
Akap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,721,618 - 88,755,426 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,721,618 - 88,755,412 (-)EnsemblGRCm39 Ensembl
GRCm381188,830,792 - 88,864,596 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,830,792 - 88,864,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv371188,692,106 - 88,725,900 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361188,647,760 - 88,667,593 (-)NCBIMGSCv36mm8
Celera1198,443,444 - 98,477,088 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1154.34NCBI
Akap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554515,756,835 - 5,770,238 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554515,756,648 - 5,787,617 (-)NCBIChiLan1.0ChiLan1.0
AKAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21973,258,822 - 73,295,090 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11778,069,847 - 78,106,113 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01751,162,993 - 51,199,202 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11756,023,381 - 56,058,744 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1756,023,381 - 56,058,744 (+)Ensemblpanpan1.1panPan2
AKAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1931,884,028 - 31,908,142 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl931,885,478 - 31,904,386 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha931,111,289 - 31,147,661 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0932,679,514 - 32,715,929 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl932,679,552 - 32,713,004 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1931,465,187 - 31,501,542 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0931,748,681 - 31,785,035 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0931,832,099 - 31,868,463 (+)NCBIUU_Cfam_GSD_1.0
Akap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560231,227,485 - 31,245,312 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364905,830,973 - 5,845,441 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364905,829,728 - 5,842,217 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AKAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1233,396,473 - 33,411,440 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11233,396,473 - 33,410,395 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AKAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11636,275,287 - 36,313,612 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1636,275,209 - 36,306,012 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660777,095,917 - 7,132,219 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Akap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479512,107,622 - 12,125,064 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479512,089,519 - 12,121,501 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Akap1
116 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:125
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000003251, ENSRNOT00000055683
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
2289982Bp303Blood pressure QTL 303arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)107345299275632053Rat
2289983Bp304Blood pressure QTL 304arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)107357954174119158Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2292617Ept18Estrogen-induced pituitary tumorigenesis QTL 183.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
724555Bp150Blood pressure QTL 1500.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)107345299278210622Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
2306793Ean5Experimental allergic neuritis QTL 54.7nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)107255241693995749Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2298481Eau9Experimental allergic uveoretinitis QTL 90.0169uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)106592723382565079Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106134527681714865Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106134541382564856Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
12880053Cm104Cardiac mass QTL 1040.009heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)107345299283463334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
1358188Ept9Estrogen-induced pituitary tumorigenesis QTL 93.9pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)107345313696120911Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat

Markers in Region
RH141905  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,621,080 - 73,621,293 (+)MAPPERmRatBN7.2
mRatBN7.21617,844,021 - 17,844,237 (+)MAPPERmRatBN7.2
Rnor_6.01619,568,001 - 19,568,216NCBIRnor6.0
Rnor_6.01076,151,073 - 76,151,285NCBIRnor6.0
Rnor_5.01619,425,028 - 19,425,243UniSTSRnor5.0
Rnor_5.01073,960,252 - 73,960,464UniSTSRnor5.0
RGSC_v3.41077,261,760 - 77,261,972UniSTSRGSC3.4
RGSC_v3.41618,331,190 - 18,331,405UniSTSRGSC3.4
Celera1618,052,386 - 18,052,601UniSTS
Celera1072,527,589 - 72,527,801UniSTS
RH 3.4 Map10681.4UniSTS
Cytogenetic Map10q26UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF068202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF092523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000003251   ⟹   ENSRNOP00000003251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1073,621,913 - 73,653,896 (-)Ensembl
Rnor_6.0 Ensembl1076,164,046 - 76,166,251 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000055683   ⟹   ENSRNOP00000052543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1073,621,883 - 73,640,980 (-)Ensembl
Rnor_6.0 Ensembl1076,151,038 - 76,166,276 (-)Ensembl
RefSeq Acc Id: NM_053665   ⟹   NP_446117
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,119,124 - 74,133,457 (-)NCBI
mRatBN7.21073,621,913 - 73,636,246 (-)NCBI
Rnor_6.01076,151,905 - 76,166,251 (-)NCBI
Rnor_5.01073,927,523 - 73,960,524 (+)NCBI
RGSC_v3.41077,262,592 - 77,276,832 (-)RGD
Celera1072,528,421 - 72,542,825 (-)RGD
Sequence:
RefSeq Acc Id: XM_006247067   ⟹   XP_006247129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,138,230 (-)NCBI
mRatBN7.21073,621,021 - 73,641,070 (-)NCBI
Rnor_6.01076,151,013 - 76,170,990 (-)NCBI
Rnor_5.01073,927,523 - 73,960,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247068   ⟹   XP_006247130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,151,366 (-)NCBI
mRatBN7.21073,621,021 - 73,654,123 (-)NCBI
Rnor_6.01076,151,013 - 76,183,987 (-)NCBI
Rnor_5.01073,927,523 - 73,960,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767930   ⟹   XP_008766152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,137,415 (-)NCBI
mRatBN7.21073,621,021 - 73,638,851 (-)NCBI
Rnor_6.01076,151,013 - 76,168,889 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039085023   ⟹   XP_038940951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,126,936 - 74,138,223 (-)NCBI
mRatBN7.21073,629,726 - 73,641,213 (-)NCBI
RefSeq Acc Id: XM_039085025   ⟹   XP_038940953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,129,082 - 74,138,223 (-)NCBI
mRatBN7.21073,631,871 - 73,641,213 (-)NCBI
RefSeq Acc Id: XM_063268268   ⟹   XP_063124338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,138,214 (-)NCBI
RefSeq Acc Id: XM_063268270   ⟹   XP_063124340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,151,329 (-)NCBI
RefSeq Acc Id: XM_063268271   ⟹   XP_063124341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,131,344 (-)NCBI
RefSeq Acc Id: XM_063268272   ⟹   XP_063124342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,131,317 (-)NCBI
RefSeq Acc Id: XR_005489674
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,129,159 - 74,138,223 (-)NCBI
mRatBN7.21073,631,966 - 73,641,213 (-)NCBI
RefSeq Acc Id: XR_005489675
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,129,082 - 74,138,223 (-)NCBI
mRatBN7.21073,631,871 - 73,641,213 (-)NCBI
RefSeq Acc Id: XR_005489676
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,130,919 - 74,138,223 (-)NCBI
mRatBN7.21073,633,755 - 73,641,213 (-)NCBI
RefSeq Acc Id: XR_005489677
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,127,680 - 74,138,223 (-)NCBI
mRatBN7.21073,630,469 - 73,641,213 (-)NCBI
RefSeq Acc Id: NP_446117   ⟸   NM_053665
- UniProtKB: O88980 (UniProtKB/Swiss-Prot),   O88884 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006247130   ⟸   XM_006247068
- Peptide Label: isoform X1
- UniProtKB: F1LMK0 (UniProtKB/TrEMBL),   A6HHY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247129   ⟸   XM_006247067
- Peptide Label: isoform X1
- UniProtKB: F1LMK0 (UniProtKB/TrEMBL),   A6HHY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766152   ⟸   XM_008767930
- Peptide Label: isoform X1
- UniProtKB: F1LMK0 (UniProtKB/TrEMBL),   A6HHY7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000052543   ⟸   ENSRNOT00000055683
Ensembl Acc Id: ENSRNOP00000003251   ⟸   ENSRNOT00000003251
RefSeq Acc Id: XP_038940951   ⟸   XM_039085023
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038940953   ⟸   XM_039085025
- Peptide Label: isoform X3
- UniProtKB: D4A9M6 (UniProtKB/TrEMBL),   A6HHY9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063124340   ⟸   XM_063268270
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063124338   ⟸   XM_063268268
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063124341   ⟸   XM_063268271
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063124342   ⟸   XM_063268272
- Peptide Label: isoform X5
Protein Domains
KH   RII binding   Tudor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88884-F1-model_v2 AlphaFold O88884 1-854 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620826 AgrOrtholog
BioCyc Gene G2FUF-23710 BioCyc
Ensembl Genes ENSRNOG00000002373 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003251.8 UniProtKB/TrEMBL
  ENSRNOT00000055683.6 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.50.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7114881 IMAGE-MGC_LOAD
InterPro KH-I_AKAP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RII_binding_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNase_OB-fold_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor_AKAP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor_domain_containing UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:114124 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93292 IMAGE-MGC_LOAD
NCBI Gene 114124 ENTREZGENE
PANTHER A-KINASE ANCHOR PROTEIN 1, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RII_binding_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Akap1 PhenoGen
PROSITE KH_TYPE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002373 RatGTEx
SMART SM00322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6HHY7 ENTREZGENE, UniProtKB/TrEMBL
  A6HHY9 ENTREZGENE, UniProtKB/TrEMBL
  AKAP1_RAT UniProtKB/Swiss-Prot
  D4A9M6 ENTREZGENE, UniProtKB/TrEMBL
  F1LMK0 ENTREZGENE, UniProtKB/TrEMBL
  O88884 ENTREZGENE
  O88980 ENTREZGENE
UniProt Secondary O88980 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Akap1  A-kinase anchoring protein 1  Akap1  A kinase (PRKA) anchor protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Akap1  A kinase (PRKA) anchor protein 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Akap1  A kinase (PRKA) anchor protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_physical_interaction binds to type I and II regulatory subunits of protein kinase A and anchors them to the cytoplasmic face of the mitochondrial outer membrane 724707