Akap1 (A-kinase anchoring protein 1) - Rat Genome Database

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Gene: Akap1 (A-kinase anchoring protein 1) Rattus norvegicus
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Symbol: Akap1
Name: A-kinase anchoring protein 1
RGD ID: 620826
Description: Enables several functions, including enzyme binding activity; protein kinase A regulatory subunit binding activity; and tubulin binding activity. Involved in several processes, including cellular response to cAMP; negative regulation of cell growth involved in cardiac muscle cell development; and negative regulation of protein import into nucleus. Located in lipid droplet; mitochondrial crista; and postsynaptic membrane. Is active in neuromuscular junction and postsynaptic specialization, intracellular component. Biomarker of brain ischemia. Orthologous to human AKAP1 (A-kinase anchoring protein 1); PARTICIPATES IN protein kinase A (PKA) signaling pathway; vascular endothelial growth factor signaling pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: A kinase (PRKA) anchor protein 1; a kinase anchor protein 1, mitochondrial; A-kinase anchor protein 1, mitochondrial; A-kinase anchor protein 121 kDa; AKAP 121; Akap84; D-AKAP-1; dual specificity A-kinase-anchoring protein 1; PRKA1; protein kinase A-anchoring protein 1; S-AKAP84; spermatid A-kinase anchor protein 84
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Bmd4
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81074,118,232 - 74,151,366 (-)NCBIGRCr8
mRatBN7.21073,621,021 - 73,654,123 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,621,883 - 73,653,896 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1078,236,555 - 78,250,887 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01077,741,478 - 77,755,810 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01073,204,658 - 73,218,993 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01076,151,013 - 76,183,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1076,151,038 - 76,166,276 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01073,927,523 - 73,960,524 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41077,262,592 - 77,276,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11077,276,968 - 77,291,202 (-)NCBI
Celera1072,528,421 - 72,542,825 (-)NCBICelera
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
Akap1Ratbrain ischemia  IEP 2313128protein:altered expression:parietal cortex, hippocampus (rat)RGD 
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Original Reference(s)
Akap1Rathereditary breast ovarian cancer syndrome  ISORGD:13436768554872ClinVar Annotator: match by term: Breast-ovarian cancer, familial, susceptibility to, 1ClinVarPMID:38922859
Akap1RatJoubert syndrome 1  ISORGD:13436768554872ClinVar Annotator: match by term: Familial aplasia of the vermisClinVarPMID:28492532
Akap1Ratprostate cancer  ISORGD:13436768554872ClinVar Annotator: match by term: Malignant tumor of prostateClinVarPMID:23265383
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Akap1Ratobesity  ISORGD:134367611554173CTD Direct Evidence: marker/mechanismCTDPMID:20975297

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Original Reference(s)
Akap1Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of AKAP1 mRNA]CTDPMID:31150632
Akap1Rat(1->4)-beta-D-glucan multiple interactionsISORGD:7313576480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of AKAP1 mRNACTDPMID:36331819
Akap1Rat1,2-dimethylhydrazine increases expressionISORGD:73135764804641,2-Dimethylhydrazine results in increased expression of AKAP1 mRNACTDPMID:22206623
Akap1Rat14-Deoxy-11,12-didehydroandrographolide decreases expressionISORGD:1343676648046414-deoxy-11,12-didehydroandrographolide results in decreased expression of AKAP1 mRNACTDPMID:22101062
Akap1Rat17beta-estradiol affects expressionISORGD:13436766480464Estradiol affects the expression of AKAP1 mRNACTDPMID:14699072|PMID:22574217
Akap1Rat17beta-estradiol increases expressionISORGD:13436766480464Estradiol results in increased expression of AKAP1 mRNACTDPMID:31614463
Akap1Rat17beta-estradiol increases expressionISORGD:7313576480464Estradiol results in increased expression of AKAP1 mRNACTDPMID:39298647
Akap1Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of AKAP1 mRNACTDPMID:32145629
Akap1Rat17beta-estradiol decreases expressionISORGD:13436766480464Estradiol results in decreased expression of AKAP1 mRNACTDPMID:31646340
Akap1Rat17beta-estradiol multiple interactionsISORGD:13436766480464[Estradiol binds to ESR2 protein] which results in increased expression of AKAP1 mRNA; Estradiol inhibits more ...CTDPMID:20404318|PMID:31646340
Akap1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:7313576480464Tetrachlorodibenzodioxin results in increased expression of AKAP1 mRNACTDPMID:19933214
Akap1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of AKAP1 mRNACTDPMID:34747641
Akap1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:7313576480464Tetrachlorodibenzodioxin affects the expression of AKAP1 mRNACTDPMID:21570461
Akap1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of AKAP1 mRNACTDPMID:21215274|PMID:33387578
Akap1Rat2-amino-14,16-dimethyloctadecan-3-ol decreases expressionISORGD:134367664804642-amino-14,16-dimethyloctadecan-3-ol results in decreased expression of AKAP1 proteinCTDPMID:32044396
Akap1Rat3-chloropropane-1,2-diol decreases expressionEXP 6480464alpha-Chlorohydrin results in decreased expression of AKAP1 mRNACTDPMID:28522335
Akap1Rat4,4'-sulfonyldiphenol decreases expressionISORGD:7313576480464bisphenol S results in decreased expression of AKAP1 mRNACTDPMID:39298647
Akap1Rat4,4'-sulfonyldiphenol affects methylationISORGD:7313576480464bisphenol S affects the methylation of AKAP1 geneCTDPMID:31683443
Akap1Rat4-hydroxyphenyl retinamide increases expressionISORGD:7313576480464Fenretinide results in increased expression of AKAP1 mRNACTDPMID:28973697
Akap1Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of AKAP1 mRNACTDPMID:30047161

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Biological Process
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Akap1Ratantiviral innate immune response involved_inISORGD:13436761624291 PMID:31522117RGDPMID:31522117
Akap1Ratantiviral innate immune response involved_inIEAUniProtKB:Q92667|ensembl:ENSP000003377361600115GO_REF:0000107EnsemblGO_REF:0000107
Akap1Ratantiviral innate immune response involved_inISSUniProtKB:Q926671600115GO_REF:0000024UniProtGO_REF:0000024
Akap1Ratapoptotic process involved_inIEAUniProtKB:O08715|ensembl:ENSMUSP000001035371600115GO_REF:0000107EnsemblGO_REF:0000107
Akap1Ratapoptotic process involved_inISORGD:7313571624291 PMID:32072193RGDPMID:32072193
Akap1Ratapoptotic process involved_inISSUniProtKB:O087151600115GO_REF:0000024UniProtGO_REF:0000024
Akap1Ratcellular response to cAMP  IEP 2313127CPT-cAMPRGD 
Akap1Ratcellular response to peptide hormone stimulus  IEP 2313127 RGD 
Akap1Ratnegative regulation of cell growth involved in cardiac muscle cell development  IMP 2312604 RGD 
Akap1Ratnegative regulation of dephosphorylation  IMP 2312604NFATc3RGD 
Akap1Ratnegative regulation of protein import into nucleus  IMP 2312604NFATc3RGD 
Akap1Ratpositive regulation of meiotic cell cycle process involved in oocyte maturation involved_inISORGD:142610741624291 PMID:23426434RGDPMID:23426434
Akap1Ratprotein localization involved_inISORGD:142610741624291 PMID:23426434RGDPMID:23426434
Akap1Ratregulation of protein kinase A signaling  ICGO:00434952312597 RGD 
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Cellular Component
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Akap1Ratcytoplasm located_inISORGD:142610741624291 PMID:23426434RGDPMID:23426434
Akap1Ratlipid droplet  IDA 2312597 RGD 
Akap1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Akap1Ratmembrane is_active_inIBAPANTHER:PTN000296152|RGD:6208261600115GO_REF:0000033GO_CentralGO_REF:0000033
Akap1Ratmitochondrial crista  IDA 2312601 RGD 
Akap1Ratmitochondrial outer membrane located_inIEAUniProtKB-SubCell:SL-01721600115GO_REF:0000044UniProtGO_REF:0000044
Akap1Ratmitochondrial outer membrane located_inIEAUniProtKB-KW:KW-10001600115GO_REF:0000043UniProtGO_REF:0000043
Akap1Ratmitochondrion located_inISORGD:1343676|UniProtKB:Q92667-1|UniProtKB:Q92667-21624291 RGDGO_REF:0000052
Akap1Ratmitochondrion located_inIEAUniProtKB:O08715|ensembl:ENSMUSP000001035371600115GO_REF:0000107EnsemblGO_REF:0000107
Akap1Ratmitochondrion located_inIEAUniProtKB:Q92667|ensembl:ENSP000003377361600115GO_REF:0000107EnsemblGO_REF:0000107
Akap1Ratmitochondrion located_inISORGD:7313571624291 PMID:32072193RGDPMID:32072193
Akap1Ratmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
Akap1Ratmitochondrion located_inIEAARBA:ARBA000269621600115GO_REF:0000117UniProtGO_REF:0000117
Akap1Ratmitochondrion is_active_inIBAMGI:104729|PANTHER:PTN000296152|RGD:620826|UniProtKB:Q926671600115GO_REF:0000033GO_CentralGO_REF:0000033
Akap1Ratmitochondrion located_inIEAUniProtKB:A0A140VK05|ensembl:ENSP000003377361600115GO_REF:0000107EnsemblGO_REF:0000107
Akap1Ratmitochondrion located_inIEAUniProtKB-SubCell:SL-01731600115GO_REF:0000044UniProtGO_REF:0000044
Akap1Ratneuromuscular junction  IDA 2313126 RGD 
Akap1Ratneuromuscular junction is_active_inIDA 2313126PMID:11716788SynGO 
Akap1Ratpostsynaptic membrane  IDA 2313126 RGD 
Akap1Ratpostsynaptic specialization, intracellular component is_active_inIDA 2313126PMID:11716788SynGO 
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Molecular Function
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Original Reference(s)
Akap1Ratbeta-tubulin binding  IDA 2313124 RGD 
Akap1Ratmicrotubule binding  IDA 2313124 RGD 
Akap1Ratmolecular adaptor activity  IDA 2312597 RGD 
Akap1Ratnucleic acid binding enablesIEAInterPro:IPR0040871600115GO_REF:0000002InterProGO_REF:0000002
Akap1Ratprotein binding enablesISORGD:13436761624291UniProtKB:P13861|UniProtKB:Q9H078 PMID:16642035, PMID:24083380, PMID:24981860, PMID:26496610, PMID:31522117, PMID:33961781RGDPMID:16642035|PMID:24083380|PMID:24981860|PMID:26496610|PMID:31522117|PMID:33961781
Akap1Ratprotein binding enablesISORGD:7313571624291UniProtKB:Q06986|UniProtKB:Q91VD9 PMID:18323779, PMID:32072193RGDPMID:18323779|PMID:32072193
Akap1Ratprotein binding enablesISORGD:731357,PR:O08715-51624291UniProtKB:Q16825 PMID:15143158RGDPMID:15143158
Akap1Ratprotein binding enablesISORGD:1343676,UniProtKB:Q92667-21624291UniProtKB:Q7Z4T9-3|UniProtKB:Q99417 PMID:12223483RGDPMID:12223483
Akap1Ratprotein kinase A regulatory subunit binding  IDA 2312597 RGD 
Akap1Ratprotein kinase A regulatory subunit binding enablesIBAPANTHER:PTN000296152|RGD:620826|UniProtKB:Q926671600115GO_REF:0000033GO_CentralGO_REF:0000033
Akap1Ratprotein kinase A regulatory subunit binding enablesISORGD:142610741624291UniProtKB:C1PIG4|UniProtKB:P05207 PMID:23426434RGDPMID:23426434
Akap1Ratprotein kinase A regulatory subunit binding enablesISORGD:13436761624291UniProtKB:P13861 PMID:17911601RGDPMID:17911601
Akap1Ratprotein kinase A regulatory subunit binding enablesIEAUniProtKB:Q92667|ensembl:ENSP000003377361600115GO_REF:0000107EnsemblGO_REF:0000107
Akap1Ratprotein kinase binding  IDA 724797 RGD 
Akap1Ratprotein kinase binding  IPIRGD:33942312601 RGD 
Akap1Ratprotein phosphatase binding  IDA 2312597 RGD 
Akap1RatRNA binding enablesIEAUniProtKB-KW:KW-06941600115GO_REF:0000043UniProtGO_REF:0000043
Akap1RatRNA binding enablesIEAInterPro:IPR004088|InterPro:IPR0366121600115GO_REF:0000002InterProGO_REF:0000002
Akap1RatRNA binding enablesIEAUniRule:UR0004154221600115GO_REF:0000104UniProtGO_REF:0000104
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RGD Manual Annotations


  
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Original Reference(s)
Akap1Ratprotein kinase A (PKA) signaling pathway   ISORGD:13436762312475 RGD 
Akap1Ratprotein kinase A (PKA) signaling pathway   ISORGD:13436762312477 RGD 

Imported Annotations - PID (archival)

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Original Reference(s)
Akap1Ratvascular endothelial growth factor signaling pathway   ISORGD:13436766484113 PIDPID:200188

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#
Reference Title
Reference Citation
1. The A-kinase anchor protein AKAP121 is a negative regulator of cardiomyocyte hypertrophy. Abrenica B, etal., J Mol Cell Cardiol. 2009 May;46(5):674-81.
2. Identification and characterization of D-AKAP1 as a major adipocyte PKA and PP1 binding protein. Bridges D, etal., Biochem Biophys Res Commun. 2006 Jul 21;346(1):351-7. Epub 2006 Jun 2.
3. A-kinase anchor protein 84/121 are targeted to mitochondria and mitotic spindles by overlapping amino-terminal motifs. Cardone L, etal., J Mol Biol. 2002 Jul 12;320(3):663-75.
4. Proteolysis of AKAP121 regulates mitochondrial activity during cellular hypoxia and brain ischaemia. Carlucci A, etal., EMBO J. 2008 Apr 9;27(7):1073-84. Epub 2008 Mar 6.
5. A-kinase anchoring proteins: from protein complexes to physiology and disease. Carnegie GK, etal., IUBMB Life. 2009 Apr;61(4):394-406.
6. Organelle-specific targeting of protein kinase AII (PKAII). Molecular and in situ characterization of murine A kinase anchor proteins that recruit regulatory subunits of PKAII to the cytoplasmic surface of mitochondria. Chen Q, etal., J Biol Chem 1997 Jun 13;272(24):15247-57.
7. Expression of a kinase anchor protein 121 is regulated by hormones in thyroid and testicular germ cells. Feliciello A, etal., J Biol Chem. 1998 Sep 4;273(36):23361-6.
8. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
9. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
10. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
11. PKA, PKC, and AKAP localization in and around the neuromuscular junction. Perkins GA, etal., BMC Neurosci. 2001;2:17. Epub 2001 Oct 23.
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Occurrence of A-kinase anchor protein and associated cAMP-dependent protein kinase in the inner compartment of mammalian mitochondria. Sardanelli AM, etal., FEBS Lett. 2006 Oct 16;580(24):5690-6. Epub 2006 Sep 18.
16. Localized effects of cAMP mediated by distinct routes of protein kinase A. Tasken K and Aandahl EM, Physiol Rev. 2004 Jan;84(1):137-67.
17. AAT-1, a novel testis-specific AMY-1-binding protein, forms a quaternary complex with AMY-1, A-kinase anchor protein 84, and a regulatory subunit of cAMP-dependent protein kinase and is phosphorylated by its kinase. Yukitake H, etal., J Biol Chem. 2002 Nov 22;277(47):45480-92. Epub 2002 Sep 9.
1 to 17 of 17 rows
PMID:12477932   PMID:14651853   PMID:15143158   PMID:17537920   PMID:17911601   PMID:18614015   PMID:19946888   PMID:20511238   PMID:21526220   PMID:22658674   PMID:22681889   PMID:32108342  
PMID:38850669  



Akap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81074,118,232 - 74,151,366 (-)NCBIGRCr8
mRatBN7.21073,621,021 - 73,654,123 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,621,883 - 73,653,896 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1078,236,555 - 78,250,887 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01077,741,478 - 77,755,810 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01073,204,658 - 73,218,993 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01076,151,013 - 76,183,987 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1076,151,038 - 76,166,276 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01073,927,523 - 73,960,524 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41077,262,592 - 77,276,832 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11077,276,968 - 77,291,202 (-)NCBI
Celera1072,528,421 - 72,542,825 (-)NCBICelera
Cytogenetic Map10q26NCBI
AKAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381757,085,246 - 57,121,344 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1757,085,092 - 57,121,346 (+)EnsemblGRCh38hg38GRCh38
GRCh371755,162,607 - 55,198,705 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361752,517,552 - 52,553,709 (+)NCBINCBI36Build 36hg18NCBI36
Build 341752,529,085 - 52,553,608NCBI
Celera1751,624,091 - 51,660,266 (+)NCBICelera
Cytogenetic Map17q22ENTREZGENE
HuRef1750,523,434 - 50,559,589 (+)NCBIHuRef
CHM1_11755,227,656 - 55,263,814 (+)NCBICHM1_1
T2T-CHM13v2.01757,959,590 - 57,995,715 (+)NCBIT2T-CHM13v2.0
Akap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,721,618 - 88,755,426 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,721,618 - 88,755,412 (-)EnsemblGRCm39 Ensembl
GRCm381188,830,792 - 88,864,596 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,830,792 - 88,864,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv371188,692,106 - 88,725,900 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361188,647,760 - 88,667,593 (-)NCBIMGSCv36mm8
Celera1198,443,444 - 98,477,088 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1154.34NCBI
Akap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554515,756,835 - 5,770,238 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554515,756,648 - 5,787,617 (-)NCBIChiLan1.0ChiLan1.0
AKAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21973,258,822 - 73,295,090 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11778,069,847 - 78,106,113 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01751,162,993 - 51,199,202 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11756,023,381 - 56,058,744 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1756,023,381 - 56,058,744 (+)Ensemblpanpan1.1panPan2
AKAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1931,884,028 - 31,908,142 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl931,885,478 - 31,904,386 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha931,111,289 - 31,147,661 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0932,679,514 - 32,715,929 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl932,679,552 - 32,713,004 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1931,465,187 - 31,501,542 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0931,748,681 - 31,785,035 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0931,832,099 - 31,868,463 (+)NCBIUU_Cfam_GSD_1.0
Akap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560231,227,485 - 31,245,312 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364905,830,973 - 5,845,441 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364905,829,728 - 5,842,217 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AKAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1233,396,473 - 33,411,440 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11233,396,473 - 33,410,395 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
AKAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11636,275,287 - 36,313,612 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1636,275,209 - 36,306,012 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660777,095,917 - 7,132,219 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Akap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479512,107,622 - 12,125,064 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479512,089,519 - 12,121,501 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Akap1
116 total Variants

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:125
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000003251, ENSRNOT00000055683
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105166340575085664Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat

1 to 10 of 84 rows
RH141905  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21073,621,080 - 73,621,293 (+)MAPPERmRatBN7.2
mRatBN7.21617,844,021 - 17,844,237 (+)MAPPERmRatBN7.2
Rnor_6.01619,568,001 - 19,568,216NCBIRnor6.0
Rnor_6.01076,151,073 - 76,151,285NCBIRnor6.0
Rnor_5.01619,425,028 - 19,425,243UniSTSRnor5.0
Rnor_5.01073,960,252 - 73,960,464UniSTSRnor5.0
RGSC_v3.41077,261,760 - 77,261,972UniSTSRGSC3.4
RGSC_v3.41618,331,190 - 18,331,405UniSTSRGSC3.4
Celera1618,052,386 - 18,052,601UniSTS
Celera1072,527,589 - 72,527,801UniSTS
RH 3.4 Map10681.4UniSTS
Cytogenetic Map10q26UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 21 of 21 rows
RefSeq Transcripts NM_053665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039085025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063268272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF068202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF092523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 21 of 21 rows

Ensembl Acc Id: ENSRNOT00000003251   ⟹   ENSRNOP00000003251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1073,621,913 - 73,653,896 (-)Ensembl
Rnor_6.0 Ensembl1076,164,046 - 76,166,251 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000055683   ⟹   ENSRNOP00000052543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1073,621,883 - 73,640,980 (-)Ensembl
Rnor_6.0 Ensembl1076,151,038 - 76,166,276 (-)Ensembl
RefSeq Acc Id: NM_053665   ⟹   NP_446117
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,119,124 - 74,133,457 (-)NCBI
mRatBN7.21073,621,913 - 73,636,246 (-)NCBI
Rnor_6.01076,151,905 - 76,166,251 (-)NCBI
Rnor_5.01073,927,523 - 73,960,524 (+)NCBI
RGSC_v3.41077,262,592 - 77,276,832 (-)RGD
Celera1072,528,421 - 72,542,825 (-)RGD
Sequence:
RefSeq Acc Id: XM_006247067   ⟹   XP_006247129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,138,230 (-)NCBI
mRatBN7.21073,621,021 - 73,641,070 (-)NCBI
Rnor_6.01076,151,013 - 76,170,990 (-)NCBI
Rnor_5.01073,927,523 - 73,960,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247068   ⟹   XP_006247130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,151,366 (-)NCBI
mRatBN7.21073,621,021 - 73,654,123 (-)NCBI
Rnor_6.01076,151,013 - 76,183,987 (-)NCBI
Rnor_5.01073,927,523 - 73,960,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767930   ⟹   XP_008766152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,137,415 (-)NCBI
mRatBN7.21073,621,021 - 73,638,851 (-)NCBI
Rnor_6.01076,151,013 - 76,168,889 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039085023   ⟹   XP_038940951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,126,936 - 74,138,223 (-)NCBI
mRatBN7.21073,629,726 - 73,641,213 (-)NCBI
RefSeq Acc Id: XM_039085025   ⟹   XP_038940953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,129,082 - 74,138,223 (-)NCBI
mRatBN7.21073,631,871 - 73,641,213 (-)NCBI
RefSeq Acc Id: XM_063268268   ⟹   XP_063124338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,138,214 (-)NCBI
RefSeq Acc Id: XM_063268270   ⟹   XP_063124340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,151,329 (-)NCBI
RefSeq Acc Id: XM_063268271   ⟹   XP_063124341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,131,344 (-)NCBI
RefSeq Acc Id: XM_063268272   ⟹   XP_063124342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,118,232 - 74,131,317 (-)NCBI
RefSeq Acc Id: XR_005489674
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,129,159 - 74,138,223 (-)NCBI
mRatBN7.21073,631,966 - 73,641,213 (-)NCBI
RefSeq Acc Id: XR_005489675
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,129,082 - 74,138,223 (-)NCBI
mRatBN7.21073,631,871 - 73,641,213 (-)NCBI
RefSeq Acc Id: XR_005489676
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,130,919 - 74,138,223 (-)NCBI
mRatBN7.21073,633,755 - 73,641,213 (-)NCBI
RefSeq Acc Id: XR_005489677
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81074,127,680 - 74,138,223 (-)NCBI
mRatBN7.21073,630,469 - 73,641,213 (-)NCBI
1 to 5 of 12 rows
1 to 5 of 12 rows
RefSeq Acc Id: NP_446117   ⟸   NM_053665
- UniProtKB: O88980 (UniProtKB/Swiss-Prot),   O88884 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006247130   ⟸   XM_006247068
- Peptide Label: isoform X1
- UniProtKB: F1LMK0 (UniProtKB/TrEMBL),   A6HHY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247129   ⟸   XM_006247067
- Peptide Label: isoform X1
- UniProtKB: F1LMK0 (UniProtKB/TrEMBL),   A6HHY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766152   ⟸   XM_008767930
- Peptide Label: isoform X1
- UniProtKB: F1LMK0 (UniProtKB/TrEMBL),   A6HHY7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000052543   ⟸   ENSRNOT00000055683
KH   RII binding   Tudor

Name Modeler Protein Id AA Range Protein Structure
AF-O88884-F1-model_v2 AlphaFold O88884 1-854 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 41 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-23710 BioCyc
Ensembl Genes ENSRNOG00000002373 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000003251 ENTREZGENE
  ENSRNOT00000055683 ENTREZGENE
Gene3D-CATH 2.30.30.140 UniProtKB/Swiss-Prot
  2.40.50.90 UniProtKB/Swiss-Prot
  3.30.1370.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7114881 IMAGE-MGC_LOAD
InterPro KH-I_AKAP1 UniProtKB/Swiss-Prot
  KH_dom UniProtKB/Swiss-Prot
  KH_dom_type_1 UniProtKB/Swiss-Prot
  KH_dom_type_1_sf UniProtKB/Swiss-Prot
  RII_binding_1 UniProtKB/Swiss-Prot
  SNase_OB-fold_sf UniProtKB/Swiss-Prot
  Tudor UniProtKB/Swiss-Prot
  Tudor_AKAP1 UniProtKB/Swiss-Prot
  Tudor_domain_containing UniProtKB/Swiss-Prot
KEGG Report rno:114124 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93292 IMAGE-MGC_LOAD
NCBI Gene 114124 ENTREZGENE
PANTHER A-KINASE ANCHOR PROTEIN 1, MITOCHONDRIAL UniProtKB/Swiss-Prot
  TUDOR DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot
Pfam KH_1 UniProtKB/Swiss-Prot
  RII_binding_1 UniProtKB/Swiss-Prot
  TUDOR UniProtKB/Swiss-Prot
PhenoGen Akap1 PhenoGen
PROSITE KH_TYPE_1 UniProtKB/Swiss-Prot
  TUDOR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002373 RatGTEx
SMART SM00322 UniProtKB/Swiss-Prot
  TUDOR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot
  Tudor/PWWP/MBT UniProtKB/Swiss-Prot
UniProt A6HHY7 ENTREZGENE, UniProtKB/TrEMBL
  A6HHY9 ENTREZGENE, UniProtKB/TrEMBL
  AKAP1_RAT UniProtKB/Swiss-Prot
  D4A9M6 ENTREZGENE, UniProtKB/TrEMBL
  F1LMK0 ENTREZGENE, UniProtKB/TrEMBL
  O88884 ENTREZGENE
  O88980 ENTREZGENE
1 to 40 of 41 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Akap1  A-kinase anchoring protein 1  Akap1  A kinase (PRKA) anchor protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Akap1  A kinase (PRKA) anchor protein 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Akap1  A kinase (PRKA) anchor protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_physical_interaction binds to type I and II regulatory subunits of protein kinase A and anchors them to the cytoplasmic face of the mitochondrial outer membrane 724707