Septin4 (septin 4) - Rat Genome Database

Name: Septin4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Septin4 (septin 4) Rattus norvegicus

Analyze

Symbol:

Septin4

Name:

septin 4

RGD ID:

1308781

Description:

Predicted to enable several functions, including GTP binding activity; GTPase activity; and magnesium ion binding activity. Predicted to be involved in several processes, including flagellated sperm motility; positive regulation of intrinsic apoptotic signaling pathway; and positive regulation of protein ubiquitination. Predicted to act upstream of or within brain development; sperm capacitation; and sperm mitochondrion organization. Predicted to be located in several cellular components, including dendrite; perikaryon; and sperm flagellum. Predicted to be part of septin complex. Predicted to be active in several cellular components, including cytoskeleton; sperm annulus; and synaptic vesicle. Orthologous to human SEPTIN4 (septin 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

EG3-1RVC; EG3RVC; expression gene 3 in rat visual cortex; expression gene 3-1 in rat visual cortex; LOC287606; MGC156532; peanut-like 2; peanut-like 2 (Drosophila); Pnutl2; Sept4; septin-4

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SEPTIN4 (septin 4)	HGNC	Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Septin4 (septin 4)	HGNC	OMA, Inparanoid, Panther, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Septin4 (septin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SEPTIN4 (septin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SEPTIN4 (septin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Septin4 (septin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SEPTIN4 (septin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SEPTIN4 (septin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Septin4 (septin 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Septin4 (septin 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Homo sapiens (human):	SEPTIN4 (septin 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	sept4b (septin 4b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Sep4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector)
Caenorhabditis elegans (roundworm):	unc-59	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector)
Saccharomyces cerevisiae (baker's yeast):	CDC3	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	72,366,729 - 72,390,764 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	72,366,873 - 72,390,768 (+)	Ensembl
Rnor_6.0	10	74,860,068 - 74,884,196 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	74,861,714 - 74,884,196 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	75,217,843 - 75,227,838 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	75,871,422 - 75,880,878 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	75,885,791 - 75,895,248 (+)	NCBI
Celera	10	71,297,013 - 71,304,586 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Fanconi anemia complementation group O (ISO)

Lewy body dementia (ISO)

Parkinson's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aconitine (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (EXP,ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium atom (ISO)

carbon nanotube (ISO)

carmustine (EXP)

cisplatin (EXP,ISO)

cobalt dichloride (EXP)

cocaine (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

copper(II) chloride (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (ISO)

folic acid (ISO)

heroin (ISO)

indole-3-methanol (EXP)

ketamine (EXP)

methotrexate (EXP)

methylmercury chloride (ISO)

mifepristone (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

O-methyleugenol (ISO)

ochratoxin A (EXP)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

propanal (ISO)

propiconazole (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium dichromate (EXP)

tetrachloromethane (ISO)

tioguanine (EXP)

topotecan (EXP)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (ISO)

cellular protein localization (IBA)

cytoskeleton-dependent cytokinesis (IBA)

flagellated sperm motility (ISO)

hematopoietic stem cell homeostasis (ISO)

negative regulation of stem cell proliferation (ISO)

neuron migration (ISO)

positive regulation of apoptotic process (ISO)

positive regulation of intrinsic apoptotic signaling pathway (ISO)

positive regulation of protein ubiquitination (ISO)

regulation of exocytosis (IBA)

sperm capacitation (ISO)

sperm mitochondrion organization (ISO)

spermatid development (ISO)

spermatid differentiation (ISO)

tissue morphogenesis (ISO)

Cellular Component

axon (ISO)

axon terminus (ISO)

cell division site (IBA)

cell projection (ISO)

cytoplasm (ISO)

dendrite (ISO)

microtubule cytoskeleton (IBA)

mitochondrion (ISO)

motile cilium (ISO)

nucleoplasm (ISO)

perikaryon (ISO)

septin complex (IBA,ISO)

septin ring (IBA)

sperm annulus (IBA,ISO)

sperm flagellum (ISO)

synaptic vesicle (IBA)

Molecular Function

GTP binding (ISO)

GTPase activity (IBA,ISO)

identical protein binding (ISO)

magnesium ion binding (ISO)

molecular adaptor activity (IBA)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Ihara M, etal., J Biol Chem. 2003 Jun 27;278(26):24095-102. doi: 10.1074/jbc.M301352200. Epub 2003 Apr 14.
3.	MGD data from the GO Consortium
4.	RGD automated data pipeline
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11064363	PMID:12477932	PMID:15033532	PMID:15737931	PMID:16314519	PMID:17105210	PMID:17546647	PMID:17634366	PMID:18614015	PMID:18809578	PMID:21185211	PMID:23976951
PMID:25588830

Genomics

Comparative Map Data

Septin4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	72,366,729 - 72,390,764 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	72,366,873 - 72,390,768 (+)	Ensembl
Rnor_6.0	10	74,860,068 - 74,884,196 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	74,861,714 - 74,884,196 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	75,217,843 - 75,227,838 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	75,871,422 - 75,880,878 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	75,885,791 - 75,895,248 (+)	NCBI
Celera	10	71,297,013 - 71,304,586 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

SEPTIN4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	58,520,250 - 58,544,368 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	58,520,255 - 58,544,372 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	56,597,617 - 56,621,689 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	53,952,615 - 53,964,410 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	17	53,952,614 - 53,961,662	NCBI
Celera	17	53,059,414 - 53,071,208 (-)	NCBI
Cytogenetic Map	17	q22	NCBI
HuRef	17	51,957,926 - 51,978,501 (-)	NCBI		HuRef
CHM1_1	17	56,663,185 - 56,683,752 (-)	NCBI		CHM1_1

Septin4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	87,457,515 - 87,481,369 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	87,457,479 - 87,481,365 (+)	Ensembl
GRCm38	11	87,566,689 - 87,590,543 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	87,566,653 - 87,590,539 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	87,394,633 - 87,404,041 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	87,397,326 - 87,406,734 (+)	NCBI			mm8
Celera	11	97,176,498 - 97,185,884 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI

Septin4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955451	4,505,318 - 4,530,387 (+)	NCBI	ChiLan1.0	ChiLan1.0

SEPTIN4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	57,448,904 - 57,472,837 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	57,448,904 - 57,472,690 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	52,595,185 - 52,607,020 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

SEPTIN4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	33,138,167 - 33,162,212 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	33,138,165 - 33,157,996 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	32,373,320 - 32,397,361 (-)	NCBI
ROS_Cfam_1.0	9	33,944,231 - 33,967,292 (-)	NCBI
UMICH_Zoey_3.1	9	32,730,857 - 32,754,884 (-)	NCBI
UNSW_CanFamBas_1.0	9	33,014,223 - 33,038,236 (-)	NCBI
UU_Cfam_GSD_1.0	9	33,106,394 - 33,130,433 (-)	NCBI

Septin4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	32,465,161 - 32,489,497 (-)	NCBI
SpeTri2.0	NW_004936490	4,597,888 - 4,609,905 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEPTIN4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	34,772,776 - 34,785,176 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	36,013,607 - 36,043,161 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SEPTIN4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	34,863,357 - 34,887,433 (+)	NCBI	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666077	5,677,698 - 5,701,831 (+)	NCBI	Vero_WHO_p1.0

Septin4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624871	330,225 - 402,327 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH129619

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	72,390,276 - 72,390,714 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	76,546,629 - 76,547,066	NCBI	Rnor6.0
Rnor_6.0	10	74,883,709 - 74,884,146	NCBI	Rnor6.0
Rnor_5.0	10	75,217,893 - 75,218,330	UniSTS	Rnor5.0
Rnor_5.0	10	76,428,697 - 76,429,134	UniSTS	Rnor5.0
RGSC_v3.4	10	75,880,391 - 75,880,828	UniSTS	RGSC3.4
Celera	10	71,304,099 - 71,304,536	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH144106

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	72,386,966 - 72,387,098 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	74,880,399 - 74,880,530	NCBI	Rnor6.0
Rnor_5.0	10	75,221,509 - 75,221,640	UniSTS	Rnor5.0
Rnor_5.0	10	75,226,017 - 75,226,148	UniSTS	Rnor5.0
RGSC_v3.4	10	75,877,081 - 75,877,212	UniSTS	RGSC3.4
Cytogenetic Map	10	q26	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	10	49444551	81709989	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49444551	81709989	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	49444551	81709989	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61345276	81714865	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61345413	82564856	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	65927233	82565079	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	66743655	98003205	Rat
631565	Hcuc4	Hepatic copper content QTL 4	4.15		hepatic copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	10	66941813	73452992	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67502108	73579767	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
12903245	Cm110	Cardiac mass QTL 110		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	71115217	72606468	Rat
12903246	Cm111	Cardiac mass QTL 111		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	71115217	72606468	Rat
12903247	Cm112	Cardiac mass QTL 112		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	71115217	72606468	Rat
12903248	Am14	Aortic mass QTL 14		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	71115217	72606468	Rat
12903249	Kidm68	Kidney mass QTL 68		0.02	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	71115217	72606468	Rat
12902615	Bw185	Body weight QTL 185		0.01	body mass (VT:0001259)	body weight (CMO:0000012)	10	71115217	72606468	Rat
1579918	Bp279	Blood pressure QTL 279		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	71115217	72606468	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	120
Count of miRNA genes:	86
Interacting mature miRNAs:	95
Transcripts:	ENSRNOT00000044226
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	24	28	19	12	19	2	2	54	31	22	11	2
Low	1	19	29	22	7	22	6	9	20	4	19		6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597118	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005489745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY208293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY208294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC126069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000044226 ⟹ ENSRNOP00000041380

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	72,381,310 - 72,390,764 (+)	Ensembl
Rnor_6.0 Ensembl	10	74,874,130 - 74,884,196 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076026 ⟹ ENSRNOP00000068198

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	72,378,689 - 72,390,764 (+)	Ensembl
Rnor_6.0 Ensembl	10	74,871,578 - 74,884,196 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076050 ⟹ ENSRNOP00000068282

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	72,381,293 - 72,390,764 (+)	Ensembl
Rnor_6.0 Ensembl	10	74,874,130 - 74,884,196 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076078

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	72,368,894 - 72,383,766 (+)	Ensembl
Rnor_6.0 Ensembl	10	74,861,714 - 74,877,199 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076196 ⟹ ENSRNOP00000068036

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	74,874,138 - 74,878,793 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076396

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	74,882,068 - 74,882,804 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076701 ⟹ ENSRNOP00000067917

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	74,871,582 - 74,882,804 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076750

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	74,883,173 - 74,884,196 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076841

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	72,388,715 - 72,390,768 (+)	Ensembl
Rnor_6.0 Ensembl	10	74,882,002 - 74,882,994 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000076995 ⟹ ENSRNOP00000068253

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	72,366,873 - 72,390,764 (+)	Ensembl
Rnor_6.0 Ensembl	10	74,871,523 - 74,884,194 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000085052 ⟹ ENSRNOP00000069431

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	72,384,103 - 72,390,764 (+)	Ensembl
Rnor_6.0 Ensembl	10	74,874,130 - 74,884,196 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088581 ⟹ ENSRNOP00000072349

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	72,378,761 - 72,390,762 (+)	Ensembl
Rnor_6.0 Ensembl	10	74,871,581 - 74,884,194 (+)	Ensembl

RefSeq Acc Id:

NM_001011893 ⟹ NP_001011893

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,381,310 - 72,390,764 (+)	NCBI
Rnor_6.0	10	74,874,130 - 74,884,196 (+)	NCBI
Rnor_5.0	10	75,217,843 - 75,227,838 (-)	NCBI
RGSC_v3.4	10	75,871,422 - 75,880,878 (+)	RGD
Celera	10	71,297,013 - 71,304,586 (+)	RGD

Sequence:

show sequence

GAGATGACAGCAGGAGCATCAAGACAAGCCTGTTTCTGTTCGAGGACCTTTGCCTGGAGATAGA
ATTAGACCTAGAGCTTGCTGACAGGGGTCTCAAGTGTGGGGCATGGACCATTCACTGGGATGGC
AAGGGAACCCTGTCCCCGAGGACGGGACTGAAGCTGGGGATGACAAGGAGTACTGTGGGCTTTG
CAACCCTCCCCAATCAAGTTCATAGGAAGTCTGTGAAGAAAGGCTTTGACTTTACCCTCATGGT
GGCAGGAGAATCTGGTCTGGGTAAATCCACTCTTGTCAACAGTCTCTTCCTCACTGACTTGTAC
CGGGATCGGAAATTGCTAGGTGCGGAAGAGAGGATCATGCAAACCGTGGAGATTACTAAGCATG
CGGTGGATATAGAAGAGAAGGGAGTGAGGCTGCGACTCACCATTGTGGACACTCCGGGTTTCGG
GGATGCAGTCAACAACACAGAGTGCTGGAGGCCCGTGGCTGAGTACATTGACCAGCAGTTTGAA
CAGTATTTCCGAGATGAGAGTGGCCTGAATCGCAAGAACATCCAAGACAACAGGGTGCACTGCT
ACCTGTACTTCATCTCACCCTTTGGCCACGGGCTCCGGCCATTGGATGTTGAATTCATGAAGGC
CCTGCATCAGCGGGTCAACATTGTGCCTATCTTGGCTAAGGCAGACACACTGACACCCTCTGAA
GTGGACCGAAAGAAATGCAAAATCCGGGAGGAGATCGAGCACTTTGGAATCAAGATCTATCAGT
TCCCAGATTGTGATTCTGATGAGGATGAGGACTTCAAATTACAGGACCAAGCCCTAAAGGAAAG
CATCCCATTCGCGGTGATTGGCAGCAACACTGTGGTAGAAGCCAGGGGGCGGAGAGTTCGAGGC
CGGCTCTACCCTTGGGGCATCGTGGAAGTGGAAAACCCAGGTCACTGCGACTTTGTCAAGTTGA
GGACAATGCTGGTGCGTACCCACATGCAGGACCTAAAGGATGTGACCCGAGAGACACACTATGA
GAACTACAGGGCACAGTGCATCCAGAGCATGACCCGGCTAGTAGTGAAGGAACGGAATCGCAAG
GACAGATCCAGAAACTGAGAAGCTCATCCGGGAGAAAGATGAAGAGCTGCGGCGGATGCAGGAG
ATGCTACACAAAATCCAAAGACAGATGAAGGAGACTCACTAACTGGCTTTTGGACCTGAATATT
TAAATCTCTTCTACCAGCCCACGCCGGCCTCTCTCCCTGCATCAGCTCTGCTCAGGCCCCCTGC
AGCTCCTACCAGTTCGCCTTATATCCCTGCTGACTTCTCAGAGACTCAGAGGAAATAAACTAAC
CTATATGTGGCATAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017597118 ⟹ XP_017452607

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,366,738 - 72,390,764 (+)	NCBI
Rnor_6.0	10	74,860,750 - 74,884,196 (+)	NCBI

Sequence:

show sequence

CCACTGTGAGGTCCCCACCCCGAGAACGTGAGGTCGGACGCAAGGTGACCATCTCCCCAGGAAA
ACAGTCAATGCAGTCACCTCATCATGTGACATGTCGAACAGTGTCTGAAGGAACCTATAAGTCT
CCCCTATATTCAGAGCTTTCTCCAAAGCCCTCTACCCAAGCCACTGCAGCCTTTGAGTTGACCC
CTCGGCCTTTGCCCCCTCGGTCCTTACCTAAGTATGGGCCTGATTGCTCATGGTGGGCCTTACT
GAATCCTAAAGTTGAAACACCCCAAAACCAATCCATATTTGATTTTGAACCTAAGTCGCCTCCC
TTCCTAGACCCTTTAGAGTCCTTTTATGAAATGGACTCAACCTCTTTCTGTGAGGACCTGATGT
TCCAGAGAGACAAAGCAAGCTTACCACCATCCCCAAAGGAGTCTTTATACCGGGTACCATTGAC
AGAAGTGCAAAAGACCCCGAAGTGCACCAGCAAACAACCCTCTCAAGGGTTCAATGCTTTCTTC
CTCGATGTTTCCGAGGAAATGTACAACCGGATCCTCTGGTGGCTGAAAGATGAGGAGATCAAGC
ACTTCCTGGAGGACAACAGTGATGATGCTGAACTGAGCAAGTTCGTGAAGGATTTCCCAGGAAG
CGAACCCTGCCACCCAACGGAGTCCAAGACAAGGGTGGCCAGGCCCCAGATCTTGGAGCCAAGG
CCCCAGAGCCCAGACCTCTGTGATGATGATGTGGAGTTCAGAGCCACGTTGTGGTCCCAGCCCT
CTGACAGTCAGCAGTACTTCTGTCCCCCAGCCCCTCTCAGCCCTTCCTCCAGGCCCCGCAGTCC
ATGGGGCAAGCTTGATCCTTACGATTCCTCTGAGGATGACAAGGAGTACGTGGGCTTTGCAACC
CTCCCCAATCAAGTTCATAGGAAGTCTGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGGCAG
GAGAATCTGGTCTGGGTAAATCCACTCTTGTCAACAGTCTCTTCCTCACTGACTTGTACCGGGA
TCGGAAATTGCTAGGTGCGGAAGAGAGGATCATGCAAACCGTGGAGATTACTAAGCATGCGGTG
GATATAGAAGAGAAGGGAGTGAGGCTGCGACTCACCATTGTGGACACTCCGGGTTTCGGGGATG
CAGTCAACAACACAGAGTGCTGGAGGCCCGTGGCTGAGTACATTGACCAGCAGTTTGAACAGTA
TTTCCGAGATGAGAGTGGCCTGAATCGCAAGAACATCCAAGACAACAGGGTGCACTGCTGCCTG
TACTTCATCTCACCCTTTGGCCACGGGCTCCGGCCATTGGATGTTGAATTCATGAAGGCCCTGC
ATCAGCGGGTCAACATTGTGCCTATCTTGGCTAAGGCAGACACACTGACACCCTCTGAAGTGGA
CCGAAAGAAATGCAAAATCCGGGAGGAGATCGAGCACTTTGGAATCAAGATCTATCAGTTCCCA
GATTGTGATTCTGATGAGGATGAGGACTTCAAATTACAGGACCAAGCCCTAAAGGAAAGCATCC
CATTCGCGGTGATTGGCAGCAACACTGTGGTAGAAGCCAGGGGGCGGAGAGTTCGAGGCCGGCT
CTACCCTTGGGGCATCGTGGAAGTGGAAAACCCAGGTCACTGCGACTTTGTCAAGTTGAGGACA
ATGCTGGTGCGTACCCACATGCAGGACCTAAAGGATGTGACCCGAGAGACACACTATGAGAACT
ACAGGGCACAGTGCATCCAGAGCATGACCCGGCTAGTAGTGAAGGAACGGAATCGCAAGGACAG
ATCCAGAAACTGAGAAGCTCATCCGGGAGAAAGATGAAGAGCTGCGGCGGATGCAGGAGATGCT
ACACAAAATCCAAAGACAGATGAAGGAGACTCACTAACTGGCTTTTGGACCTGAATATTTAAAT
CTCTTCTACCAGCCCACGCCGGCCTCTCTCCCTGCATCAGCTCTGCTCAGGCCCCCTGCAGCTC
CTACCAGTTCGCCTTATATCCCTGCTGACTTCTCAGAGACTCAGAGGAAATAAACTAACCTATA
TGTGGC

hide sequence

RefSeq Acc Id:

XM_017597120 ⟹ XP_017452609

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,381,294 - 72,390,764 (+)	NCBI
Rnor_6.0	10	74,874,091 - 74,884,196 (+)	NCBI

Sequence:

show sequence

GGGTCAAAGAAAAAGGGGGAAGGAACAAACCAGGAAGCCAGATGACAGCAGGAGCATCAAGACA
AGCCTGTTTCTGTTCGAGGACCTTTGCCTGGAGATAGAATTAGACCTAGAGCTTGCTGACAGGG
GTCTCAAGTGTGGGGCATGGACCATTCACTGGGATGGCAAGGGAACCCTGTCCCCGAGGACGGG
ACTGAAGCTGGGATCAAGCACTTCCTGGAGGACAACAGTGATGATGCTGAACTGAGCAAGTTCG
TGAAGGATTTCCCAGGAAGCGAACCCTGCCACCCAACGGAGTCCAAGACAAGGGTGGCCAGGCC
CCAGATCTTGGAGCCAAGGCCCCAGAGCCCAGACCTCTGTGATGATGATGTGGAGTTCAGAGCC
ACGTTGTGGTCCCAGCCCTCTGACAGTCAGCAGTACTTCTGTCCCCCAGCCCCTCTCAGCCCTT
CCTCCAGGCCCCGCAGTCCATGGGGCAAGCTTGATCCTTACGATTCCTCTGAGGATGACAAGGA
GTACGTGGGCTTTGCAACCCTCCCCAATCAAGTTCATAGGAAGTCTGTGAAGAAAGGCTTTGAC
TTTACCCTCATGGTGGCAGGAGAATCTGGTCTGGGTAAATCCACTCTTGTCAACAGTCTCTTCC
TCACTGACTTGTACCGGGATCGGAAATTGCTAGGTGCGGAAGAGAGGATCATGCAAACCGTGGA
GATTACTAAGCATGCGGTGGATATAGAAGAGAAGGGAGTGAGGCTGCGACTCACCATTGTGGAC
ACTCCGGGTTTCGGGGATGCAGTCAACAACACAGAGTGCTGGAGGCCCGTGGCTGAGTACATTG
ACCAGCAGTTTGAACAGTATTTCCGAGATGAGAGTGGCCTGAATCGCAAGAACATCCAAGACAA
CAGGGTGCACTGCTGCCTGTACTTCATCTCACCCTTTGGCCACGGGCTCCGGCCATTGGATGTT
GAATTCATGAAGGCCCTGCATCAGCGGGTCAACATTGTGCCTATCTTGGCTAAGGCAGACACAC
TGACACCCTCTGAAGTGGACCGAAAGAAATGCAAAATCCGGGAGGAGATCGAGCACTTTGGAAT
CAAGATCTATCAGTTCCCAGATTGTGATTCTGATGAGGATGAGGACTTCAAATTACAGGACCAA
GCCCTAAAGGAAAGCATCCCATTCGCGGTGATTGGCAGCAACACTGTGGTAGAAGCCAGGGGGC
GGAGAGTTCGAGGCCGGCTCTACCCTTGGGGCATCGTGGAAGTGGAAAACCCAGGTCACTGCGA
CTTTGTCAAGTTGAGGACAATGCTGGTGCGTACCCACATGCAGGACCTAAAGGATGTGACCCGA
GAGACACACTATGAGAACTACAGGGCACAGTGCATCCAGAGCATGACCCGGCTAGTAGTGAAGG
AACGGAATCGCAACAAGCTGACAAGAGAGAGTGGTACTGACTTCCCTATCCCTGCTGTCCCACC
AGGGACAGATCCAGAAACTGAGAAGCTCATCCGGGAGAAAGATGAAGAGCTGCGGCGGATGCAG
GAGATGCTACACAAAATCCAAAGACAGATGAAGGAGACTCACTAACTGGCTTTTGGACCTGAAT
ATTTAAATCTCTTCTACCAGCCCACGCCGGCCTCTCTCCCTGCATCAGCTCTGCTCAGGCCCCC
TGCAGCTCCTACCAGTTCGCCTTATATCCCTGCTGACTTCTCAGAGACTCAGAGGAAATAAACT
AACCTATATGTGGC

hide sequence

RefSeq Acc Id:

XM_017597121 ⟹ XP_017452610

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,378,673 - 72,390,764 (+)	NCBI
Rnor_6.0	10	74,871,487 - 74,884,196 (+)	NCBI

Sequence:

show sequence

GCCCCAGGCCCGACTAGCCCCGCCCCACCCCGCCACCAGCGGACCGCACTCTTGCAAGGCTAGT
GGGGGCCCCGCGGTGCAACGAGGTCCGCGCGCAGCTCGCACCAAGGGTGGCTGGGGCGCTGTCC
AGGAGGAGCTGGCCCGGCTCGGGCTGCAACCATGATCAAGCACTTCCTGGAGGACAACAGTGAT
GATGCTGAACTGAGCAAGTTCGTGAAGGATTTCCCAGGAAGCGAACCCTGCCACCCAACGGAGT
CCAAGACAAGGGTGGCCAGGCCCCAGATCTTGGAGCCAAGGCCCCAGAGCCCAGACCTCTGTGA
TGATGATGTGGAGTTCAGAGCCACGTTGTGGTCCCAGCCCTCTGACAGTCAGCAGTACTTCTGT
CCCCCAGCCCCTCTCAGCCCTTCCTCCAGGCCCCGCAGTCCATGGGGCAAGCTTGATCCTTACG
ATTCCTCTGAGGATGACAAGGAGTACGTGGGCTTTGCAACCCTCCCCAATCAAGTTCATAGGAA
GTCTGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGGCAGGAGAATCTGGTCTGGGTAAATCC
ACTCTTGTCAACAGTCTCTTCCTCACTGACTTGTACCGGGATCGGAAATTGCTAGGTGCGGAAG
AGAGGATCATGCAAACCGTGGAGATTACTAAGCATGCGGTGGATATAGAAGAGAAGGGAGTGAG
GCTGCGACTCACCATTGTGGACACTCCGGGTTTCGGGGATGCAGTCAACAACACAGAGTGCTGG
AGGCCCGTGGCTGAGTACATTGACCAGCAGTTTGAACAGTATTTCCGAGATGAGAGTGGCCTGA
ATCGCAAGAACATCCAAGACAACAGGGTGCACTGCTGCCTGTACTTCATCTCACCCTTTGGCCA
CGGGCTCCGGCCATTGGATGTTGAATTCATGAAGGCCCTGCATCAGCGGGTCAACATTGTGCCT
ATCTTGGCTAAGGCAGACACACTGACACCCTCTGAAGTGGACCGAAAGAAATGCAAAATCCGGG
AGGAGATCGAGCACTTTGGAATCAAGATCTATCAGTTCCCAGATTGTGATTCTGATGAGGATGA
GGACTTCAAATTACAGGACCAAGCCCTAAAGGAAAGCATCCCATTCGCGGTGATTGGCAGCAAC
ACTGTGGTAGAAGCCAGGGGGCGGAGAGTTCGAGGCCGGCTCTACCCTTGGGGCATCGTGGAAG
TGGAAAACCCAGGTCACTGCGACTTTGTCAAGTTGAGGACAATGCTGGTGCGTACCCACATGCA
GGACCTAAAGGATGTGACCCGAGAGACACACTATGAGAACTACAGGGCACAGTGCATCCAGAGC
ATGACCCGGCTAGTAGTGAAGGAACGGAATCGCAACAAGCTGACAAGAGAGAGTGGTACTGACT
TCCCTATCCCTGCTGTCCCACCAGGGACAGATCCAGAAACTGAGAAGCTCATCCGGGAGAAAGA
TGAAGAGCTGCGGCGGATGCAGGAGATGCTACACAAAATCCAAAGACAGATGAAGGAGACTCAC
TAACTGGCTTTTGGACCTGAATATTTAAATCTCTTCTACCAGCCCACGCCGGCCTCTCTCCCTG
CATCAGCTCTGCTCAGGCCCCCTGCAGCTCCTACCAGTTCGCCTTATATCCCTGCTGACTTCTC
AGAGACTCAGAGGAAATAAACTAACCTATATGTGGC

hide sequence

RefSeq Acc Id:

XM_017597123 ⟹ XP_017452612

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,381,293 - 72,390,764 (+)	NCBI
Rnor_6.0	10	74,874,090 - 74,884,196 (+)	NCBI

Sequence:

show sequence

GGGGTCAAAGAAAAAGGGGGAAGGAACAAACCAGGAAGCCAGATGACAGCAGGAGCATCAAGAC
AAGCCTGTTTCTGTTCGAGGACCTTTGCCTGGAGATAGAATTAGACCTAGAGCTTGCTGACAGG
GGTCTCAAGTGTGGGGCATGGACCATTCACTGGGATGGCAAGGGAACCCTGTCCCCGAGGACGG
GACTGAAGCTGGGATCAAGCACTTCCTGGAGGACAACAGTGATGATGCTGAACTGAGCAAGTTC
GTGAAGGATTTCCCAGGAAGCGAACCCTGCCACCCAACGGAGTCCAAGACAAGGGTGGCCAGGC
CCCAGATCTTGGAGCCAAGGCCCCAGAGCCCAGACCTCTGTGATGATGATGTGGAGTTCAGAGC
CACGTTGTGGTCCCAGCCCTCTGACAGTCAGCAGTACTTCTGTCCCCCAGCCCCTCTCAGCCCT
TCCTCCAGGCCCCGCAGTCCATGGGGCAAGCTTGATCCTTACGATTCCTCTGAGGATGACAAGG
AGTACGTGGGCTTTGCAACCCTCCCCAATCAAGTTCATAGGAAGTCTGTGAAGAAAGGCTTTGA
CTTTACCCTCATGGTGGCAGGAGAATCTGGTCTGGGTAAATCCACTCTTGTCAACAGTCTCTTC
CTCACTGACTTGTACCGGGATCGGAAATTGCTAGGTGCGGAAGAGAGGATCATGCAAACCGTGG
AGATTACTAAGCATGCGGTGGATATAGAAGAGAAGGGAGTGAGGCTGCGACTCACCATTGTGGA
CACTCCGGGTTTCGGGGATGCAGTCAACAACACAGAGTGCTGGAGGCCCGTGGCTGAGTACATT
GACCAGCAGTTTGAACAGTATTTCCGAGATGAGAGTGGCCTGAATCGCAAGAACATCCAAGACA
ACAGGGTGCACTGCTGCCTGTACTTCATCTCACCCTTTGGCCACGGGCTCCGGCCATTGGATGT
TGAATTCATGAAGGCCCTGCATCAGCGGGTCAACATTGTGCCTATCTTGGCTAAGGCAGACACA
CTGACACCCTCTGAAGTGGACCGAAAGAAATGCAAAATCCGGGAGGAGATCGAGCACTTTGGAA
TCAAGATCTATCAGTTCCCAGATTGTGATTCTGATGAGGATGAGGACTTCAAATTACAGGACCA
AGCCCTAAAGGAAAGCATCCCATTCGCGGTGATTGGCAGCAACACTGTGGTAGAAGCCAGGGGG
CGGAGAGTTCGAGGCCGGCTCTACCCTTGGGGCATCGTGGAAGTGGAAAACCCAGGTCACTGCG
ACTTTGTCAAGTTGAGGACAATGCTGGTGCGTACCCACATGCAGGACCTAAAGGATGTGACCCG
AGAGACACACTATGAGAACTACAGGGCACAGTGCATCCAGAGCATGACCCGGCTAGTAGTGAAG
GAACGGAATCGCAAGGACAGATCCAGAAACTGAGAAGCTCATCCGGGAGAAAGATGAAGAGCTG
CGGCGGATGCAGGAGATGCTACACAAAATCCAAAGACAGATGAAGGAGACTCACTAACTGGCTT
TTGGACCTGAATATTTAAATCTCTTCTACCAGCCCACGCCGGCCTCTCTCCCTGCATCAGCTCT
GCTCAGGCCCCCTGCAGCTCCTACCAGTTCGCCTTATATCCCTGCTGACTTCTCAGAGACTCAG
AGGAAATAAACTAACCTATATGTGGC

hide sequence

RefSeq Acc Id:

XM_017597124 ⟹ XP_017452613

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,381,296 - 72,390,764 (+)	NCBI
Rnor_6.0	10	74,874,093 - 74,884,196 (+)	NCBI

Sequence:

show sequence

GTCAAAGAAAAAGGGGGAAGGAACAAACCAGGAAGCCAGATGACAGCAGGAGCATCAAGACAAG
CCTGTTTCTGTTCGAGGACCTTTGCCTGGAGATAGAATTAGACCTAGAGCTTGCTGACAGGGGT
CTCAAGTGTGGGGCATGGACCATTCACTGGGATGGCAAGGGAACCCTGTCCCCGAGGACGGGAC
TGAAGCTGGGGATGACAAGGAGTACGTGGGCTTTGCAACCCTCCCCAATCAAGTTCATAGGAAG
TCTGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGGCAGGAGAATCTGGTCTGGGTAAATCCA
CTCTTGTCAACAGTCTCTTCCTCACTGACTTGTACCGGGATCGGAAATTGCTAGGTGCGGAAGA
GAGGATCATGCAAACCGTGGAGATTACTAAGCATGCGGTGGATATAGAAGAGAAGGGAGTGAGG
CTGCGACTCACCATTGTGGACACTCCGGGTTTCGGGGATGCAGTCAACAACACAGAGTGCTGGA
GGCCCGTGGCTGAGTACATTGACCAGCAGTTTGAACAGTATTTCCGAGATGAGAGTGGCCTGAA
TCGCAAGAACATCCAAGACAACAGGGTGCACTGCTGCCTGTACTTCATCTCACCCTTTGGCCAC
GGGCTCCGGCCATTGGATGTTGAATTCATGAAGGCCCTGCATCAGCGGGTCAACATTGTGCCTA
TCTTGGCTAAGGCAGACACACTGACACCCTCTGAAGTGGACCGAAAGAAATGCAAAATCCGGGA
GGAGATCGAGCACTTTGGAATCAAGATCTATCAGTTCCCAGATTGTGATTCTGATGAGGATGAG
GACTTCAAATTACAGGACCAAGCCCTAAAGGAAAGCATCCCATTCGCGGTGATTGGCAGCAACA
CTGTGGTAGAAGCCAGGGGGCGGAGAGTTCGAGGCCGGCTCTACCCTTGGGGCATCGTGGAAGT
GGAAAACCCAGGTCACTGCGACTTTGTCAAGTTGAGGACAATGCTGGTGCGTACCCACATGCAG
GACCTAAAGGATGTGACCCGAGAGACACACTATGAGAACTACAGGGCACAGTGCATCCAGAGCA
TGACCCGGCTAGTAGTGAAGGAACGGAATCGCAACAAGCTGACAAGAGAGAGTGGTACTGACTT
CCCTATCCCTGCTGTCCCACCAGGGACAGATCCAGAAACTGAGAAGCTCATCCGGGAGAAAGAT
GAAGAGCTGCGGCGGATGCAGGAGATGCTACACAAAATCCAAAGACAGATGAAGGAGACTCACT
AACTGGCTTTTGGACCTGAATATTTAAATCTCTTCTACCAGCCCACGCCGGCCTCTCTCCCTGC
ATCAGCTCTGCTCAGGCCCCCTGCAGCTCCTACCAGTTCGCCTTATATCCCTGCTGACTTCTCA
GAGACTCAGAGGAAATAAACTAACCTATATGTGGC

hide sequence

RefSeq Acc Id:

XM_017597125 ⟹ XP_017452614

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,378,672 - 72,390,764 (+)	NCBI
Rnor_6.0	10	74,871,491 - 74,884,196 (+)	NCBI

Sequence:

show sequence

CAGGCCCGACTAGCCCCGCCCCACCCCGCCACCAGCGGACCGCACTCTTGCAAGGCTAGTGGGG
GCCCCGCGGTGCAACGAGGTCCGCGCGCAGCTCGCACCAAGGGTGGCTGGGGCGCTGTCCAGGA
GGAGCTGGCCCGGCTCGGGCTGCAACCATGGATGACAAGGAGTACGTGGGCTTTGCAACCCTCC
CCAATCAAGTTCATAGGAAGTCTGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGGCAGGAGA
ATCTGGTCTGGGTAAATCCACTCTTGTCAACAGTCTCTTCCTCACTGACTTGTACCGGGATCGG
AAATTGCTAGGTGCGGAAGAGAGGATCATGCAAACCGTGGAGATTACTAAGCATGCGGTGGATA
TAGAAGAGAAGGGAGTGAGGCTGCGACTCACCATTGTGGACACTCCGGGTTTCGGGGATGCAGT
CAACAACACAGAGTGCTGGAGGCCCGTGGCTGAGTACATTGACCAGCAGTTTGAACAGTATTTC
CGAGATGAGAGTGGCCTGAATCGCAAGAACATCCAAGACAACAGGGTGCACTGCTGCCTGTACT
TCATCTCACCCTTTGGCCACGGGCTCCGGCCATTGGATGTTGAATTCATGAAGGCCCTGCATCA
GCGGGTCAACATTGTGCCTATCTTGGCTAAGGCAGACACACTGACACCCTCTGAAGTGGACCGA
AAGAAATGCAAAATCCGGGAGGAGATCGAGCACTTTGGAATCAAGATCTATCAGTTCCCAGATT
GTGATTCTGATGAGGATGAGGACTTCAAATTACAGGACCAAGCCCTAAAGGAAAGCATCCCATT
CGCGGTGATTGGCAGCAACACTGTGGTAGAAGCCAGGGGGCGGAGAGTTCGAGGCCGGCTCTAC
CCTTGGGGCATCGTGGAAGTGGAAAACCCAGGTCACTGCGACTTTGTCAAGTTGAGGACAATGC
TGGTGCGTACCCACATGCAGGACCTAAAGGATGTGACCCGAGAGACACACTATGAGAACTACAG
GGCACAGTGCATCCAGAGCATGACCCGGCTAGTAGTGAAGGAACGGAATCGCAACAAGCTGACA
AGAGAGAGTGGTACTGACTTCCCTATCCCTGCTGTCCCACCAGGGACAGATCCAGAAACTGAGA
AGCTCATCCGGGAGAAAGATGAAGAGCTGCGGCGGATGCAGGAGATGCTACACAAAATCCAAAG
ACAGATGAAGGAGACTCACTAACTGGCTTTTGGACCTGAATATTTAAATCTCTTCTACCAGCCC
ACGCCGGCCTCTCTCCCTGCATCAGCTCTGCTCAGGCCCCCTGCAGCTCCTACCAGTTCGCCTT
ATATCCCTGCTGACTTCTCAGAGACTCAGAGGAAATAAACTAACCTATATGTGGC

hide sequence

RefSeq Acc Id:

XM_017597127 ⟹ XP_017452616

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,378,767 - 72,390,764 (+)	NCBI
Rnor_6.0	10	74,871,491 - 74,884,196 (+)	NCBI

Sequence:

show sequence

CAGGCCCGACTAGCCCCGCCCCACCCCGCCACCAGCGGACCGCACTCTTGCAAGGCTAGTGGGG
GCCCCGCGGTGCAACGAGGTCCGCGCGCAGCTCGCACCAAGGGTGGCTGGGGCGCTGTCCAGGA
GGAGCTGGCCCGGCTCGGGCTGCAACCATGGTAAGGAGAGAGGACAGCCGGAAACGCAGGGCCT
GCCACTCCCGGGCTGCTCTGAGGGGACACTCGGCGCTGCAGCCCTAGCTGGGCAGGGCGTGAGG
ATGACAAGGAGTACGTGGGCTTTGCAACCCTCCCCAATCAAGTTCATAGGAAGTCTGTGAAGAA
AGGCTTTGACTTTACCCTCATGGTGGCAGGAGAATCTGGTCTGGGTAAATCCACTCTTGTCAAC
AGTCTCTTCCTCACTGACTTGTACCGGGATCGGAAATTGCTAGGTGCGGAAGAGAGGATCATGC
AAACCGTGGAGATTACTAAGCATGCGGTGGATATAGAAGAGAAGGGAGTGAGGCTGCGACTCAC
CATTGTGGACACTCCGGGTTTCGGGGATGCAGTCAACAACACAGAGTGCTGGAGGCCCGTGGCT
GAGTACATTGACCAGCAGTTTGAACAGTATTTCCGAGATGAGAGTGGCCTGAATCGCAAGAACA
TCCAAGACAACAGGGTGCACTGCTGCCTGTACTTCATCTCACCCTTTGGCCACGGGCTCCGGCC
ATTGGATGTTGAATTCATGAAGGCCCTGCATCAGCGGGTCAACATTGTGCCTATCTTGGCTAAG
GCAGACACACTGACACCCTCTGAAGTGGACCGAAAGAAATGCAAAATCCGGGAGGAGATCGAGC
ACTTTGGAATCAAGATCTATCAGTTCCCAGATTGTGATTCTGATGAGGATGAGGACTTCAAATT
ACAGGACCAAGCCCTAAAGGAAAGCATCCCATTCGCGGTGATTGGCAGCAACACTGTGGTAGAA
GCCAGGGGGCGGAGAGTTCGAGGCCGGCTCTACCCTTGGGGCATCGTGGAAGTGGAAAACCCAG
GTCACTGCGACTTTGTCAAGTTGAGGACAATGCTGGTGCGTACCCACATGCAGGACCTAAAGGA
TGTGACCCGAGAGACACACTATGAGAACTACAGGGCACAGTGCATCCAGAGCATGACCCGGCTA
GTAGTGAAGGAACGGAATCGCAACAAGCTGACAAGAGAGAGTGGTACTGACTTCCCTATCCCTG
CTGTCCCACCAGGGACAGATCCAGAAACTGAGAAGCTCATCCGGGAGAAAGATGAAGAGCTGCG
GCGGATGCAGGAGATGCTACACAAAATCCAAAGACAGATGAAGGAGACTCACTAACTGGCTTTT
GGACCTGAATATTTAAATCTCTTCTACCAGCCCACGCCGGCCTCTCTCCCTGCATCAGCTCTGC
TCAGGCCCCCTGCAGCTCCTACCAGTTCGCCTTATATCCCTGCTGACTTCTCAGAGACTCAGAG
GAAATAAACTAACCTATATGTGGC

hide sequence

RefSeq Acc Id:

XM_039085563 ⟹ XP_038941491

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,366,752 - 72,390,764 (+)	NCBI

RefSeq Acc Id:

XM_039085564 ⟹ XP_038941492

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,366,729 - 72,388,291 (+)	NCBI

RefSeq Acc Id:

XM_039085565 ⟹ XP_038941493

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,366,835 - 72,383,789 (+)	NCBI

RefSeq Acc Id:

XM_039085566 ⟹ XP_038941494

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,379,517 - 72,390,764 (+)	NCBI

RefSeq Acc Id:

XR_001840048

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,366,729 - 72,390,764 (+)	NCBI
Rnor_6.0	10	74,860,750 - 74,884,196 (+)	NCBI

Sequence:

show sequence

CCACTGTGAGGTCCCCACCCCGAGAACGTGAGGTCGGACGCAAGGTGACCATCTCCCCAGGAAA
ACAGTCAATGCAGTCACCTCATCATGTGACATGTCGAACAGTGTCTGAAGGAACCTATAAGTCT
CCCCTATATTCAGAGCTTTCTCCAAAGCCCTCTACCCAAGCCACTGCAGCCTTTGAGTTGACCC
CTCGGCCTTTGCCCCCTCGGTCCTTACCTAAGTATGGGCCTGATTGCTCATGGTGGGCCTTACT
GAATCCTAAAGTTGAAACACCCCAAAACCAATCCATATTTGATTTTGAACCTAAGTCGCCTCCC
TTCCTAGACCCTTTAGAGTCCTTTTATGAAATGGACTCAACCTCTTTCTGTGAGGACCTGATGT
TCCAGAGAGACAAAGCAAGCTTACCACCATCCCCAAAGGAGTCTTTATACCGGGTACCATTGAC
AGAAGTGCAAAAGACCCCGAAGTGCACCAGCAAACAACCCTCTCAAGGGTTCAATGCTTTCTTC
CTCGATGTTTCCGAGGAAATGTACAACCGGATCCTCTGGTGGCTGAAAGATGAGGAGATCAAGC
ACTTCCTGGAGGACAACAGTGATGATGCTGAACTGAGCAAGTTCGTGAAGGATTTCCCAGGAAG
CGAACCCTGCCACCCAACGGAGTCCAAGACAAGGGTGGCCAGGCCCCAGATCTTGGAGCCAAGG
CCCCAGAGCCCAGACCTCTGTGATGATGATGTGGAGTTCAGAGCCACGTTGTGGTCCCAGCCCT
CTGACAGTCAGCAGTACTTCTGTCCCCCAGCCCCTCTCAGCCCTTCCTCCAGGCCCCGCAGTCC
ATGGGGCAAGCTTGATCCTTACGATTCCTCTGAGGATGACAAGGAGTACGTGGGCTTTGCAACC
CTCCCCAATCAAGTTCATAGGAAGTCTGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGGCAG
GAGAATCTGGTCTGGGTAAATCCACTCTTGTCAACAGTCTCTTCCTCACTGACTTGTACCGGGA
TCGGAAATTGCTAGGTGCGGAAGAGAGGATCATGCAAACCGTGGAGATTACTAAGCATGCGGTG
GATATAGAAGAGAAGGGAGTGAGGCTGCGACTCACCATTGTGGACACTCCGGGTTTCGGGGATG
CAGTCAACAACACAGAGTGCTGGAGGCCCGTGGCTGAGTACATTGACCAGCAGTTTGAACAGTA
TTTCCGAGATGAGAGTGGCCTGAATCGCAAGAACATCCAAGACAACAGGGTGCACTGCTGCCTG
TACTTCATCTCACCCTTTGGCCACGGATCCGGGAGGAGATCGAGCACTTTGGAATCAAGATCTA
TCAGTTCCCAGATTGTGATTCTGATGAGGATGAGGACTTCAAATTACAGGACCAAGCCCTAAAG
GAAAGCATCCCATTCGCGGTGATTGGCAGCAACACTGTGGTAGAAGCCAGGGGGCGGAGAGTTC
GAGGCCGGCTCTACCCTTGGGGCATCGTGGAAGTGGAAAACCCAGGTCACTGCGACTTTGTCAA
GTTGAGGACAATGCTGGTGCGTACCCACATGCAGGACCTAAAGGATGTGACCCGAGAGACACAC
TATGAGAACTACAGGGCACAGTGCATCCAGAGCATGACCCGGCTAGTAGTGAAGGAACGGAATC
GCAACAAGCTGACAAGAGAGAGTGGTACTGACTTCCCTATCCCTGCTGTCCCACCAGGGACAGA
TCCAGAAACTGAGAAGCTCATCCGGGAGAAAGATGAAGAGCTGCGGCGGATGCAGGAGATGCTA
CACAAAATCCAAAGACAGATGAAGGAGACTCACTAACTGGCTTTTGGACCTGAATATTTAAATC
TCTTCTACCAGCCCACGCCGGCCTCTCTCCCTGCATCAGCTCTGCTCAGGCCCCCTGCAGCTCC
TACCAGTTCGCCTTATATCCCTGCTGACTTCTCAGAGACTCAGAGGAAATAAACTAACCTATAT
GTGGC

hide sequence

RefSeq Acc Id:

XR_005489745

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	72,366,835 - 72,383,611 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011893	(Get FASTA)	NCBI Sequence Viewer
	XP_017452607	(Get FASTA)	NCBI Sequence Viewer
	XP_017452609	(Get FASTA)	NCBI Sequence Viewer
	XP_017452610	(Get FASTA)	NCBI Sequence Viewer
	XP_017452612	(Get FASTA)	NCBI Sequence Viewer
	XP_017452613	(Get FASTA)	NCBI Sequence Viewer
	XP_017452614	(Get FASTA)	NCBI Sequence Viewer
	XP_017452616	(Get FASTA)	NCBI Sequence Viewer
	XP_038941491	(Get FASTA)	NCBI Sequence Viewer
	XP_038941492	(Get FASTA)	NCBI Sequence Viewer
	XP_038941493	(Get FASTA)	NCBI Sequence Viewer
	XP_038941494	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88334	(Get FASTA)	NCBI Sequence Viewer
	AAI26070	(Get FASTA)	NCBI Sequence Viewer
	AAP81281	(Get FASTA)	NCBI Sequence Viewer
	AAP81282	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001011893 ⟸ NM_001011893

- Sequence:

show sequence

MTRSTVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIM
QTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWRPVAEYIDQQFEQYFRDESGLNRKN
IQDNRVHCYLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPSEVDRKKCKIREEIE
HFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENP
GHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRKDRSRN

hide sequence

RefSeq Acc Id:

XP_017452607 ⟸ XM_017597118

- Peptide Label:

isoform X2

- Sequence:

show sequence

MQSPHHVTCRTVSEGTYKSPLYSELSPKPSTQATAAFELTPRPLPPRSLPKYGPDCSWWALLNP
KVETPQNQSIFDFEPKSPPFLDPLESFYEMDSTSFCEDLMFQRDKASLPPSPKESLYRVPLTEV
QKTPKCTSKQPSQGFNAFFLDVSEEMYNRILWWLKDEEIKHFLEDNSDDAELSKFVKDFPGSEP
CHPTESKTRVARPQILEPRPQSPDLCDDDVEFRATLWSQPSDSQQYFCPPAPLSPSSRPRSPWG
KLDPYDSSEDDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRK
LLGAEERIMQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWRPVAEYIDQQFEQYFR
DESGLNRKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPSEVDRK
KCKIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYP
WGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRKDRSR
N

hide sequence

RefSeq Acc Id:	XP_017452610 ⟸ XM_017597121
- Peptide Label:	isoform X7
- UniProtKB:	A0A096MJN4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIKHFLEDNSDDAELSKFVKDFPGSEPCHPTESKTRVARPQILEPRPQSPDLCDDDVEFRATLW SQPSDSQQYFCPPAPLSPSSRPRSPWGKLDPYDSSEDDKEYVGFATLPNQVHRKSVKKGFDFTL MVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQTVEITKHAVDIEEKGVRLRLTIVDTPG FGDAVNNTECWRPVAEYIDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPLDVEFM KALHQRVNIVPILAKADTLTPSEVDRKKCKIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALK ESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETH YENYRAQCIQSMTRLVVKERNRNKLTRESGTDFPIPAVPPGTDPETEKLIREKDEELRRMQEML HKIQRQMKETH hide sequence

RefSeq Acc Id:

XP_017452616 ⟸ XM_017597127

- Peptide Label:

isoform X11

- Sequence:

show sequence

MVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQTVEITKHAVDIEEKGVRLRLTIVDTPG
FGDAVNNTECWRPVAEYIDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPLDVEFM
KALHQRVNIVPILAKADTLTPSEVDRKKCKIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALK
ESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETH
YENYRAQCIQSMTRLVVKERNRNKLTRESGTDFPIPAVPPGTDPETEKLIREKDEELRRMQEML
HKIQRQMKETH

hide sequence

RefSeq Acc Id:	XP_017452614 ⟸ XM_017597125
- Peptide Label:	isoform X10
- UniProtKB:	A0A096MJT3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERI MQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWRPVAEYIDQQFEQYFRDESGLNRK NIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPSEVDRKKCKIREEI EHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVEN PGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRNKLTRESGTDFPI PAVPPGTDPETEKLIREKDEELRRMQEMLHKIQRQMKETH hide sequence

RefSeq Acc Id:

XP_017452612 ⟸ XM_017597123

- Peptide Label:

isoform X8

- Sequence:

show sequence

MDHSLGWQGNPVPEDGTEAGIKHFLEDNSDDAELSKFVKDFPGSEPCHPTESKTRVARPQILEP
RPQSPDLCDDDVEFRATLWSQPSDSQQYFCPPAPLSPSSRPRSPWGKLDPYDSSEDDKEYVGFA
TLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQTVEITKHA
VDIEEKGVRLRLTIVDTPGFGDAVNNTECWRPVAEYIDQQFEQYFRDESGLNRKNIQDNRVHCC
LYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPSEVDRKKCKIREEIEHFGIKIYQF
PDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENPGHCDFVKLR
TMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRKDRSRN

hide sequence

RefSeq Acc Id:

XP_017452609 ⟸ XM_017597120

- Peptide Label:

isoform X6

- Sequence:

show sequence

MDHSLGWQGNPVPEDGTEAGIKHFLEDNSDDAELSKFVKDFPGSEPCHPTESKTRVARPQILEP
RPQSPDLCDDDVEFRATLWSQPSDSQQYFCPPAPLSPSSRPRSPWGKLDPYDSSEDDKEYVGFA
TLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERIMQTVEITKHA
VDIEEKGVRLRLTIVDTPGFGDAVNNTECWRPVAEYIDQQFEQYFRDESGLNRKNIQDNRVHCC
LYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPSEVDRKKCKIREEIEHFGIKIYQF
PDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENPGHCDFVKLR
TMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLVVKERNRNKLTRESGTDFPIPAVPPGTDPE
TEKLIREKDEELRRMQEMLHKIQRQMKETH

hide sequence

RefSeq Acc Id:	XP_017452613 ⟸ XM_017597124
- Peptide Label:	isoform X9
- UniProtKB:	E9PST0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDHSLGWQGNPVPEDGTEAGDDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNS LFLTDLYRDRKLLGAEERIMQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWRPVAE YIDQQFEQYFRDESGLNRKNIQDNRVHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKA DTLTPSEVDRKKCKIREEIEHFGIKIYQFPDCDSDEDEDFKLQDQALKESIPFAVIGSNTVVEA RGRRVRGRLYPWGIVEVENPGHCDFVKLRTMLVRTHMQDLKDVTRETHYENYRAQCIQSMTRLV VKERNRNKLTRESGTDFPIPAVPPGTDPETEKLIREKDEELRRMQEMLHKIQRQMKETH hide sequence

RefSeq Acc Id:

ENSRNOP00000069431 ⟸ ENSRNOT00000085052

RefSeq Acc Id:

ENSRNOP00000041380 ⟸ ENSRNOT00000044226

RefSeq Acc Id:

ENSRNOP00000068253 ⟸ ENSRNOT00000076995

RefSeq Acc Id:

ENSRNOP00000068036 ⟸ ENSRNOT00000076196

RefSeq Acc Id:

ENSRNOP00000068282 ⟸ ENSRNOT00000076050

RefSeq Acc Id:

ENSRNOP00000068198 ⟸ ENSRNOT00000076026

RefSeq Acc Id:

ENSRNOP00000067917 ⟸ ENSRNOT00000076701

RefSeq Acc Id:

ENSRNOP00000072349 ⟸ ENSRNOT00000088581

RefSeq Acc Id:	XP_038941492 ⟸ XM_039085564
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038941491 ⟸ XM_039085563
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038941493 ⟸ XM_039085565
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038941494 ⟸ XM_039085566
- Peptide Label:	isoform X5

Protein Domains

Septin-type G

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697580

Promoter ID:

EPDNEW_R8098

Type:

initiation region

Name:

Sept4_1

Description:

septin 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R8099

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	74,871,534 - 74,871,594	EPDNEW

RGD ID:

13697579

Promoter ID:

EPDNEW_R8099

Type:

single initiation site

Name:

Sept4_2

Description:

septin 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R8098

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	74,874,130 - 74,874,190	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308781	AgrOrtholog
Ensembl Genes	ENSRNOG00000007367	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000041380	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000067917	UniProtKB/TrEMBL
	ENSRNOP00000068036	UniProtKB/TrEMBL
	ENSRNOP00000068198	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000068253	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000068282	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000069431	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000072349	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000044226	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000076026	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000076050	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000076196	UniProtKB/TrEMBL
	ENSRNOT00000076701	UniProtKB/TrEMBL
	ENSRNOT00000076995	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000085052	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000088581	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7366070	IMAGE-MGC_LOAD
	IMAGE:7441949	IMAGE-MGC_LOAD
InterPro	G_SEPTIN_dom	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Septin	UniProtKB/TrEMBL
KEGG Report	rno:287606	UniProtKB/TrEMBL
MGC_CLONE	MGC:109596	IMAGE-MGC_LOAD
	MGC:156532	IMAGE-MGC_LOAD
NCBI Gene	287606	ENTREZGENE
Pfam	Septin	UniProtKB/TrEMBL
PhenoGen	Septin4	PhenoGen
PIRSF	Septin	UniProtKB/TrEMBL
PROSITE	G_SEPTIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A096MIX9_RAT	UniProtKB/TrEMBL
	A0A096MJ87_RAT	UniProtKB/TrEMBL
	A0A096MJN4	ENTREZGENE, UniProtKB/TrEMBL
	A0A096MJT3	ENTREZGENE, UniProtKB/TrEMBL
	A0A096MJW0_RAT	UniProtKB/TrEMBL
	A0A0G2JVC7_RAT	UniProtKB/TrEMBL
	A0JN02_RAT	UniProtKB/TrEMBL
	E9PST0	ENTREZGENE, UniProtKB/TrEMBL
	Q6XUZ6_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-08-05	Septin4	septin 4	Sept4	septin 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Sept4	septin 4	Pnutl2	peanut-like 2 (Drosophila)	Symbol and Name updated	1299863	APPROVED
2005-12-06	Pnutl2	peanut-like 2 (Drosophila)	Pnutl2_predicted	peanut-like 2 (Drosophila) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Pnutl2_predicted	peanut-like 2 (Drosophila) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar