Gene: Shpk (sedoheptulokinase) Rattus norvegicus
Analyze
Symbol: Shpk
Name: sedoheptulokinase
Description: ENCODES a protein that exhibits sedoheptulokinase activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); cellular response to interleukin-13 (ortholog); cellular response to interleukin-4 (ortholog); ASSOCIATED WITH Canavan disease (ortholog); cystinosis (ortholog); Cystinosis, Late-Onset Juvenile or Adolescent Nephropathic Type (ortholog); FOUND IN cytoplasm (ortholog); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: carbohydrate kinase-like; Carkl; LOC287479; MGC124840
Orthologs:
Homo sapiens (human) : SHPK (sedoheptulokinase)  HGNC  Alliance
Mus musculus (house mouse) : Shpk (sedoheptulokinase)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Shpk (sedoheptulokinase)
Pan paniscus (bonobo/pygmy chimpanzee) : SHPK (sedoheptulokinase)
Canis lupus familiaris (dog) : SHPK (sedoheptulokinase)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Shpk (sedoheptulokinase)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01059,765,328 - 59,789,676 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01059,504,502 - 59,528,849 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41060,075,861 - 60,100,209 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11060,089,463 - 60,112,512 (+)NCBI
Celera1056,940,488 - 56,964,835 (+)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Shpk
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1308004
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2018-10-09
Status: ACTIVE