| 1549846 | Scl47 | Serum cholesterol level QTL 47 | 3.6 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 10 | 50574707 | 95574707 | Rat |
| 152025229 | Scl83 | Serum cholesterol level QTL 83 | 4.33 | | blood cholesterol amount (VT:0000180) | | 10 | 35710580 | 68663659 | Rat |
| 1578779 | Tcas10 | Tongue tumor susceptibility QTL 10 | 3.12 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 10 | 31297439 | 76297439 | Rat |
| 152025227 | Bw195 | Body weight QTL 195 | 5.73 | | body mass (VT:0001259) | | 10 | 46989699 | 68663659 | Rat |
| 631565 | Hcuc4 | Hepatic copper content QTL 4 | 4.15 | | liver copper amount (VT:0003065) | liver copper weight to liver dry weight ratio (CMO:0001512) | 10 | 66941813 | 73452992 | Rat |
| 1298069 | Bp168 | Blood pressure QTL 168 | 5.5 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98003205 | Rat |
| 8657410 | Bp374 | Blood pressure QTL 374 | | | heart left ventricle size trait (VT:0002753) | heart left ventricle end-diastolic diameter (CMO:0000982) | 10 | 66978955 | 67750281 | Rat |
| 2293669 | Bmd33 | Bone mineral density QTL 33 | 4.5 | 0.0001 | femur strength trait (VT:0010010) | femoral neck polar moment of inertia (CMO:0001670) | 10 | 49444551 | 81709989 | Rat |
| 152025224 | Bw193 | Body weight QTL 193 | 6.47 | | body mass (VT:0001259) | | 10 | 51663405 | 75085664 | Rat |
| 631552 | Vetf2 | Vascular elastic tissue fragility QTL 2 | 4.5 | 0.0002 | aorta elastic tissue integrity trait (VT:0010556) | artery internal elastic lamina non-tumorous lesion count (CMO:0001913) | 10 | 41142633 | 86142633 | Rat |
| 61449 | Ciaa2 | CIA Autoantibody QTL 2 | 7.1 | | blood autoantibody amount (VT:0003725) | calculated serum anti-type 2 collagen antibody titer (CMO:0001279) | 10 | 63221094 | 107211142 | Rat |
| 631557 | Bp136 | Blood pressure QTL 136 | | 0.003 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 30632053 | 75632053 | Rat |
| 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 1298078 | Stresp5 | Stress response QTL 5 | 2.99 | 0.00025 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 42045676 | 104670812 | Rat |
| 2293679 | Bmd30 | Bone mineral density QTL 30 | 3.5 | 0.0001 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 10 | 49444551 | 81709989 | Rat |
| 1549831 | Bss6 | Bone structure and strength QTL 6 | 4 | | lumbar vertebra strength trait (VT:0010574) | vertebra ultimate force (CMO:0001678) | 10 | 57576521 | 102576521 | Rat |
| 12903252 | Cm113 | Cardiac mass QTL 113 | | 0.047 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 66319447 | 67750281 | Rat |
| 70164 | Bw21 | Body weight QTL 21 | 4.36 | 0.00005 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 53797494 | 98952626 | Rat |
| 1579917 | Bp282 | Blood pressure QTL 282 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 67400316 | 68164786 | Rat |
| 61463 | Bp12 | Blood pressure QTL 12 | 6.3 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 41333258 | 86333258 | Rat |
| 8694173 | Bw149 | Body weight QTL 149 | 4.38 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 10 | 44441699 | 89441699 | Rat |
| 2300218 | Hpcl2 | Hepatic cholesterol level QTL 2 | | | liver cholesterol amount (VT:0010498) | liver cholesterol level (CMO:0001597) | 10 | 45029650 | 95600334 | Rat |
| 1554317 | Bmd4 | Bone mineral density QTL 4 | 9.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 19816042 | 99406971 | Rat |
| 70171 | Cari1 | Carrageenan-induced inflammation QTL 1 | 4.9 | 0.0005 | hypodermis integrity trait (VT:0010550) | inflammatory exudate volume (CMO:0001429) | 10 | 53797385 | 107211142 | Rat |
| 12903269 | Am15 | Aortic mass QTL 15 | | 0.042 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 10 | 66319447 | 67750281 | Rat |
| 724527 | Bp148 | Blood pressure QTL 148 | | 0.0001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 28453136 | 73453136 | Rat |
| 12903266 | Cm114 | Cardiac mass QTL 114 | | 0.02 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 10 | 66319447 | 67750281 | Rat |
| 2300171 | Bmd58 | Bone mineral density QTL 58 | 4.9 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 26944628 | 71944628 | Rat |
| 61354 | Pia10 | Pristane induced arthritis QTL 10 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 2301967 | Cm73 | Cardiac mass QTL 73 | 4.55 | | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 14487011 | 89062041 | Rat |
| 2313103 | Bss80 | Bone structure and strength QTL 80 | 2 | 0.0001 | tibia strength trait (VT:1000284) | tibia midshaft endosteal cross-sectional area (CMO:0001716) | 10 | 62057807 | 107057807 | Rat |
| 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | 0.003 | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 9658275 | 104670812 | Rat |
| 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 1 | 42323132 | 87323132 | Rat |
| 12880372 | Am12 | Aortic mass QTL 12 | | 0.003 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 10 | 66319447 | 68164786 | Rat |
| 2313105 | Bss79 | Bone structure and strength QTL 79 | 1.8 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 62057807 | 107057807 | Rat |
| 12880375 | Kidm66 | Kidney mass QTL 66 | | 0.009 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 10 | 66319447 | 68164786 | Rat |
| 9589030 | Epfw9 | Epididymal fat weight QTL 9 | 19.24 | 0.001 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 10 | 44441699 | 89441699 | Rat |
| 1357344 | Bp249 | Blood pressure QTL 249 | | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 66743655 | 98003205 | Rat |
| 10402859 | Bp381 | Blood pressure QTL 381 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 27606468 | 72606468 | Rat |
| 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 14487011 | 107057807 | Rat |
| 2293652 | Bmd22 | Bone mineral density QTL 22 | 4.9 | 0.0001 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 10 | 49444551 | 81709989 | Rat |
| 12880370 | Cm105 | Cardiac mass QTL 105 | | 0.008 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 10 | 66319447 | 68164786 | Rat |
| 70198 | BpQTLcluster9 | Blood pressure QTL cluster 9 | 2.94 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 42323132 | 87323132 | Rat |
| 12880371 | Cm106 | Cardiac mass QTL 106 | | 0.007 | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 66319447 | 68164786 | Rat |
| 2306970 | Anxrr22 | Anxiety related response QTL 22 | 5.95 | | fear/anxiety-related behavior trait (VT:1000241) | number of periods of voluntary immobility (CMO:0001045) | 10 | 61345276 | 98211570 | Rat |
| 1359017 | Hrtrt21 | Heart rate QTL 21 | 2.4 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 10 | 51772940 | 96772940 | Rat |
| 11565453 | Kidm58 | Kidney mass QTL 58 | | 0.002 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 10 | 66319447 | 67750281 | Rat |
| 7387312 | Bw125 | Body weight QTL 125 | 3 | 0.0047 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight (CMO:0000356) | 10 | 64890616 | 107211142 | Rat |
| 2312672 | Insul15 | Insulin level QTL 15 | | 0.01 | blood insulin amount (VT:0001560) | serum insulin level (CMO:0000358) | 10 | 57134272 | 102134272 | Rat |
| 2317029 | Aia19 | Adjuvant induced arthritis QTL 19 | 2.98 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 10 | 66978955 | 107211142 | Rat |
| 724556 | Pur2 | Proteinuria QTL 2 | 5.5 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 10 | 22427500 | 90627625 | Rat |
| 8662860 | Vetf10 | Vascular elastic tissue fragility QTL 10 | | | artery integrity trait (VT:0010639) | number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562) | 10 | 6154182 | 73453136 | Rat |
| 61387 | Bp1 | Blood pressure QTL 1 | 5.1 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 10 | 51770177 | 107211142 | Rat |
| 2317039 | Aia6 | Adjuvant induced arthritis QTL 6 | 4.31 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 10 | 66978955 | 107211142 | Rat |
| 70223 | Bp57 | Blood pressure QTL 57 | 5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 1 | 80676123 | Rat |
| 2317043 | Aia7 | Adjuvant induced arthritis QTL 7 | 3.82 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 10 | 37565079 | 82565079 | Rat |
| 2317042 | Aia20 | Adjuvant induced arthritis QTL 20 | 3.38 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 10 | 37565079 | 82565079 | Rat |
| 2298481 | Eau9 | Experimental allergic uveoretinitis QTL 9 | | 0.0169 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 10 | 65927233 | 82565079 | Rat |
| 70363 | Bp71 | Blood pressure QTL 71 | | 0.04 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 61345276 | 81714865 | Rat |
| 61402 | Niddm3 | Non-insulin dependent diabetes mellitus QTL 3 | 4.58 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 61345413 | 82564856 | Rat |
| 1331791 | Cm31 | Cardiac mass QTL 31 | 3.84606 | | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 29299504 | 107211142 | Rat |
| 70364 | Bp72 | Blood pressure QTL 72 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 51121100 | 96121100 | Rat |
| 2293698 | Bss43 | Bone structure and strength QTL 43 | 5.33 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra cross-sectional area (CMO:0001689) | 10 | 59209888 | 104209888 | Rat |
| 631530 | Tls3 | T-lymphoma susceptibility QTL 3 | 0 | 0.0001 | thymus integrity trait (VT:0010555) | percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911) | 10 | 51774612 | 95600334 | Rat |
| 1354608 | Cm33 | Cardiac mass QTL 33 | 2.8 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 10 | 54809292 | 99809292 | Rat |
| 1558643 | Cm44 | Cardiac mass QTL 44 | 4.8 | 0.0000368 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 61345276 | 99703528 | Rat |
| 631535 | Cm51 | Cardiac mass QTL 51 | 3 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 10 | 51786282 | 91669536 | Rat |
| 1576319 | Cia29 | Collagen induced arthritis QTL 29 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 33973921 | 78973921 | Rat |
| 8552805 | Bw145 | Body weight QTL 145 | 2.2 | | body mass (VT:0001259) | change in body weight to body weight ratio (CMO:0002216) | 10 | 41944526 | 78307017 | Rat |
| 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat |
| 2293705 | Bmd25 | Bone mineral density QTL 25 | 7.1 | 0.0001 | femur mineral mass (VT:0010011) | compact volumetric bone mineral density (CMO:0001730) | 10 | 49444551 | 81709989 | Rat |
| 1331839 | Eae18b | Experimental allergic encephalomyelitis QTL 18b | 5.8 | 0.03 | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis severity score (CMO:0001419) | 10 | 61248303 | 67785171 | Rat |
| 1576308 | Schws1 | Schwannoma susceptibility QTL 1 | | 0.0041 | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 10 | 40035094 | 102359817 | Rat |
| 631269 | Cia22 | Collagen induced arthritis QTL 22 | 8.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 40035094 | 104060283 | Rat |
| 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 14487011 | 104060283 | Rat |
| 7207811 | Bmd90 | Bone mineral density QTL 90 | 5.2 | | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 10 | 49444551 | 81709989 | Rat |
| 1576311 | Pia26 | Pristane induced arthritis QTL 26 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 31224026 | 75632053 | Rat |
| 631270 | Cia23 | Collagen induced arthritis QTL 23 | 3.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 40035094 | 104060283 | Rat |
| 7411614 | Foco18 | Food consumption QTL 18 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 10 | 44441699 | 89441699 | Rat |
| 6893336 | Cm75 | Cardiac mass QTL 75 | 0.1 | 0.87 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 10 | 61345276 | 99703528 | Rat |
| 631547 | Bp87 | Blood pressure QTL 87 | 4.5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 47369470 | 92369470 | Rat |
| 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 6357896 | 96121100 | Rat |
| 2312662 | Slep8 | Serum leptin concentration QTL 8 | | 0.05 | blood leptin amount (VT:0005667) | serum leptin level (CMO:0000780) | 10 | 57134272 | 102134272 | Rat |
| 6893342 | Cm78 | Cardiac mass QTL 78 | 0.1 | 0.88 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 10 | 42876766 | 79813922 | Rat |
| 2292441 | Bp308 | Blood pressure QTL 308 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 27606468 | 72606468 | Rat |
| 2301405 | Cm69 | Cardiac mass QTL 69 | | 0.031 | heart mass (VT:0007028) | heart wet weight to body weight ratio (CMO:0002408) | 10 | 66319447 | 67750281 | Rat |
| 631542 | Bp82 | Blood pressure QTL 82 | 6.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98952741 | Rat |
| 2312668 | Scl65 | Serum cholesterol level QTL 65 | | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 10 | 57134272 | 102134272 | Rat |
