Gene: Hdac5 (histone deacetylase 5) Rattus norvegicus
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Symbol: Hdac5
Name: histone deacetylase 5
Description: ENCODES a protein that exhibits chromatin binding; transcription factor binding; DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to lipopolysaccharide; neuron differentiation; response to activity; PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; histone modification pathway; ASSOCIATED WITH acute kidney failure; attention deficit hyperactivity disorder; Diabetic Nephropathies; FOUND IN cytoplasm; nucleus; protein-containing complex; INTERACTS WITH 4-aminopyridine; acrylamide; ammonium chloride
Type: protein-coding
RefSeq Status: PROVISIONAL
Orthologs:
Homo sapiens (human) : HDAC5 (histone deacetylase 5)  HGNC  Alliance
Mus musculus (house mouse) : Hdac5 (histone deacetylase 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hdac5 (histone deacetylase 5)
Pan paniscus (bonobo/pygmy chimpanzee) : HDAC5 (histone deacetylase 5)
Canis lupus familiaris (dog) : HDAC5 (histone deacetylase 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hdac5 (histone deacetylase 5)
Sus scrofa (pig) : HDAC5 (histone deacetylase 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01090,140,183 - 90,169,853 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01089,927,486 - 89,956,390 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41091,266,512 - 91,277,705 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11091,290,701 - 91,292,062 (-)NCBI
Celera1085,868,901 - 85,904,236 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model

Annotation    (Toggle Annotation Detail/Summary View)

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References - curated
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Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
  
More on Hdac5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 619980
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-01-30
Status: ACTIVE



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