Cryba1 (crystallin, beta A1) - Rat Genome Database

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Gene: Cryba1 (crystallin, beta A1) Rattus norvegicus
Analyze
Symbol: Cryba1
Name: crystallin, beta A1
RGD ID: 2415
Description: Predicted to enable identical protein binding activity. Predicted to be a structural constituent of eye lens. Involved in several processes, including lens development in camera-type eye; negative regulation of intracellular signal transduction; and positive regulation of anoikis. Used to study cataract; microphthalmia; and retinal detachment. Biomarker of ocular hypertension. Human ortholog(s) of this gene implicated in cataract and cataract 10 multiple types. Orthologous to human CRYBA1 (crystallin beta A1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BA3A1C; beta-A3; beta-A3 crystallin; beta-crystallin A3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Cryba1Hiser   Cryba1Nuc1Dbsa  
Genetic Models: SD-Cryba1Nuc1Dbsa HHSE/Hat
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,106,465 - 63,113,020 (-)NCBIGRCr8
mRatBN7.21062,608,373 - 62,614,726 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1062,608,383 - 62,614,726 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,240,414 - 67,246,766 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01066,745,921 - 66,752,273 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01062,215,925 - 62,222,276 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,160,777 - 65,167,504 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,161,152 - 65,167,494 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,458,061 - 66,480,390 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,758,929 - 63,765,451 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11063,772,566 - 63,776,395 (-)NCBI
Celera1061,589,011 - 61,595,363 (-)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Crystallin gene expression during rat lens development. Aarts HJ, etal., Eur J Biochem 1989 Jul 15;183(1):31-6.
2. Different evolution rates within the lens-specific beta-crystallin gene family. Aarts HJ, etal., J Mol Evol 1989 Apr;28(4):313-21.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Mutation in the betaA3/A1-crystallin encoding gene Cryba1 causes a dominant cataract in the mouse. Graw J, etal., Genomics 1999 Nov 15;62(1):67-73.
6. A splice site mutation in CRYBA1/A3 causing autosomal dominant posterior polar cataract in a Chinese pedigree. Gu Z, etal., Mol Vis. 2010 Feb 5;16:154-60.
7. Autosomal dominant cerulean cataract is associated with a chain termination mutation in the human beta-crystallin gene CRYBB2. Litt M, etal., Hum Mol Genet. 1997 May;6(5):665-8.
8. betaA3/A1-Crystallin controls anoikis-mediated cell death in astrocytes by modulating PI3K/AKT/mTOR and ERK survival pathways through the PKD/Bit1-signaling axis. Ma B, etal., Cell Death Dis. 2011 Oct 13;2:e217. doi: 10.1038/cddis.2011.100.
9. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
10. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
11. Retinal gene profiling in a hereditary rodent model of elevated intraocular pressure. Naskar R and Thanos S, Mol Vis. 2006 Oct 18;12:1199-210.
12. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
13. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. Comprehensive gene review and curation RGD comprehensive gene curation
17. A spontaneous mutation affects programmed cell death during development of the rat eye. Sinha D, etal., Exp Eye Res. 2005 Mar;80(3):323-35. doi: 10.1016/j.exer.2004.09.014.
18. betaA3/A1-crystallin in astroglial cells regulates retinal vascular remodeling during development. Sinha D, etal., Mol Cell Neurosci. 2008 Jan;37(1):85-95. Epub 2007 Aug 31.
19. Establishment of a recessive mutant small-eye rat with lens involution and retinal detachment associated with partial deletion and rearrangement of the Cryba1 gene. Yamada T, etal., Biochem J. 2015 Oct 15;471(2):293-305. doi: 10.1042/BJ20150165. Epub 2015 Aug 24.
20. A recurrent mutation in CRYBA1 is associated with an autosomal dominant congenital nuclear cataract disease in a Chinese family. Yang G, etal., Mol Vis. 2011;17:1559-63. Epub 2011 Jun 9.
21. A G-->T splice site mutation of CRYBA1/A3 associated with autosomal dominant suture cataracts in a Chinese family. Yang Z, etal., Mol Vis. 2011;17:2065-71. Epub 2011 Aug 5.
22. A novel T-->G splice site mutation of CRYBA1/A3 associated with autosomal dominant nuclear cataracts in a Chinese family. Yang Z, etal., Mol Vis. 2012;18:1283-8. Epub 2012 May 15.
23. Congenital polymorphic cataract associated with a G to A splice site mutation in the human beta-crystallin gene CRYbetaA3/A1. Yu Y, etal., Mol Vis. 2012;18:2213-20. Epub 2012 Aug 8.
24. Differential proteomics analysis of proteins from human diabetic and age-related cataractous lenses. Zhu J, etal., J Res Med Sci. 2013 Nov;18(11):984-9.
25. Mutation in the βA3/A1-crystallin gene impairs phagosome degradation in the retinal pigmented epithelium of the rat. Zigler JS, etal., J Cell Sci. 2011 Feb 15;124(Pt 4):523-31. doi: 10.1242/jcs.078790. Epub 2011 Jan 25.
Additional References at PubMed
PMID:11773034   PMID:14717595   PMID:18587492   PMID:21203897   PMID:25736717  


Genomics

Comparative Map Data
Cryba1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,106,465 - 63,113,020 (-)NCBIGRCr8
mRatBN7.21062,608,373 - 62,614,726 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1062,608,383 - 62,614,726 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,240,414 - 67,246,766 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01066,745,921 - 66,752,273 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01062,215,925 - 62,222,276 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,160,777 - 65,167,504 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,161,152 - 65,167,494 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,458,061 - 66,480,390 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,758,929 - 63,765,451 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11063,772,566 - 63,776,395 (-)NCBI
Celera1061,589,011 - 61,595,363 (-)NCBICelera
Cytogenetic Map10q24NCBI
CRYBA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381729,246,859 - 29,254,494 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1729,246,859 - 29,254,494 (+)EnsemblGRCh38hg38GRCh38
GRCh371727,573,877 - 27,581,512 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,598,001 - 24,605,638 (+)NCBINCBI36Build 36hg18NCBI36
Build 341724,598,000 - 24,605,626NCBI
Celera1724,433,393 - 24,441,030 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1723,782,531 - 23,790,168 (+)NCBIHuRef
CHM1_11727,636,586 - 27,644,223 (+)NCBICHM1_1
T2T-CHM13v2.01730,189,627 - 30,197,262 (+)NCBIT2T-CHM13v2.0
Cryba1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,609,440 - 77,616,119 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1177,609,441 - 77,616,109 (-)EnsemblGRCm39 Ensembl
GRCm381177,718,614 - 77,725,293 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,718,615 - 77,725,283 (-)EnsemblGRCm38mm10GRCm38
MGSCv371177,532,234 - 77,538,795 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,534,927 - 77,541,488 (-)NCBIMGSCv36mm8
Celera1185,217,233 - 85,223,794 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Cryba1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554813,952,988 - 3,959,764 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554813,952,976 - 3,986,548 (-)NCBIChiLan1.0ChiLan1.0
CRYBA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21935,206,029 - 35,214,046 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,077,466 - 37,095,190 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01727,522,647 - 27,530,767 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,032,799 - 28,040,525 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,032,809 - 28,040,525 (-)Ensemblpanpan1.1panPan2
CRYBA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,372,507 - 43,378,561 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,372,505 - 43,378,590 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,527,304 - 42,533,358 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0944,189,857 - 44,195,902 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl944,189,855 - 44,195,929 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,972,718 - 42,978,772 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0943,264,979 - 43,271,025 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0943,344,166 - 43,350,220 (+)NCBIUU_Cfam_GSD_1.0
Cryba1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560242,514,188 - 42,522,476 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365385,392,105 - 5,400,070 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365385,392,159 - 5,400,583 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYBA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1245,466,520 - 45,473,092 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11245,466,051 - 45,473,110 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21229,178,767 - 29,181,605 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRYBA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11623,005,892 - 23,011,357 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1623,003,874 - 23,011,206 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660757,093,414 - 7,100,122 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cryba1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247861,771,328 - 1,777,503 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247861,757,272 - 1,777,735 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cryba1
11 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:25
Interacting mature miRNAs:30
Transcripts:ENSRNOT00000011608
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)14232313287323132Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
2306787Ean3Experimental allergic neuritis QTL 33.1nervous system integrity trait (VT:0010566)body weight loss (CMO:0001399)105379738566979128Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
1331839Eae18bExperimental allergic encephalomyelitis QTL 18b5.80.03nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)106124830367785171Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106134527681714865Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
631526Bp76Blood pressure QTL 760.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106134541366743655Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106134541382564856Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat

Markers in Region
RH94650  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21062,608,396 - 62,608,498 (-)MAPPERmRatBN7.2
Rnor_6.01065,167,379 - 65,167,480NCBIRnor6.0
Rnor_5.01066,458,089 - 66,458,190UniSTSRnor5.0
RGSC_v3.41063,758,957 - 63,759,058UniSTSRGSC3.4
Celera1061,589,035 - 61,589,136UniSTS
Cytogenetic Map10q24-q25UniSTS


Genetic Models
This gene Cryba1 is modified in the following models/strains:


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2 9 25 9 17 9 8 8 11 9 10 11 8
Below cutoff 1 2 8 8 2 8 3 2 1 8

Sequence


RefSeq Acc Id: ENSRNOT00000011608   ⟹   ENSRNOP00000011608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,608,383 - 62,614,726 (-)Ensembl
Rnor_6.0 Ensembl1065,161,152 - 65,167,494 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100169   ⟹   ENSRNOP00000090008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1062,608,383 - 62,613,363 (-)Ensembl
RefSeq Acc Id: NM_013056   ⟹   NP_037188
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,106,465 - 63,112,817 (-)NCBI
mRatBN7.21062,608,373 - 62,614,726 (-)NCBI
Rnor_6.01065,161,152 - 65,167,504 (+)NCBI
Rnor_5.01066,458,061 - 66,480,390 (-)NCBI
Celera1061,589,011 - 61,595,363 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597045   ⟹   XP_017452534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81063,107,241 - 63,113,020 (-)NCBI
mRatBN7.21062,609,149 - 62,614,721 (-)NCBI
Rnor_6.01065,160,777 - 65,166,728 (+)NCBI
Sequence:
RefSeq Acc Id: NP_037188   ⟸   NM_013056
- UniProtKB: O35237 (UniProtKB/Swiss-Prot),   P14881 (UniProtKB/Swiss-Prot),   A6HGZ0 (UniProtKB/TrEMBL),   A0A8I6GIJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452534   ⟸   XM_017597045
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000011608   ⟸   ENSRNOT00000011608
RefSeq Acc Id: ENSRNOP00000090008   ⟸   ENSRNOT00000100169
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P14881-F1-model_v2 AlphaFold P14881 1-215 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697461
Promoter ID:EPDNEW_R7986
Type:single initiation site
Name:Cryba1_1
Description:crystallin, beta A1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01065,161,152 - 65,161,212EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2415 AgrOrtholog
BioCyc Gene G2FUF-24116 BioCyc
Ensembl Genes ENSRNOG00000008700 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055002798 UniProtKB/Swiss-Prot
  ENSRNOG00055027904 UniProtKB/Swiss-Prot
  ENSRNOG00060030513 UniProtKB/Swiss-Prot
  ENSRNOG00065019910 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011608 ENTREZGENE
  ENSRNOT00000011608.7 UniProtKB/Swiss-Prot
  ENSRNOT00000100169.1 UniProtKB/TrEMBL
  ENSRNOT00055004387 UniProtKB/Swiss-Prot
  ENSRNOT00055048318 UniProtKB/Swiss-Prot
  ENSRNOT00060053030 UniProtKB/Swiss-Prot
  ENSRNOT00065033556 UniProtKB/Swiss-Prot
Gene3D-CATH Crystallins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Beta/gamma_crystallin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_crystallin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25583 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 25583 ENTREZGENE
PANTHER BETA-CRYSTALLIN A3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BETA/GAMMA CRYSTALLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Crystall UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cryba1 PhenoGen
PRINTS BGCRYSTALLIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CRYSTALLIN_BETA_GAMMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008700 RatGTEx
  ENSRNOG00055002798 RatGTEx
  ENSRNOG00055027904 RatGTEx
  ENSRNOG00060030513 RatGTEx
  ENSRNOG00065019910 RatGTEx
SMART XTALbg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6GIJ4 ENTREZGENE, UniProtKB/TrEMBL
  A6HGZ0 ENTREZGENE, UniProtKB/TrEMBL
  CRBA1_RAT UniProtKB/Swiss-Prot
  O35237 ENTREZGENE
  P14881 ENTREZGENE
UniProt Secondary O35237 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Cryba1  Crystallin, beta A1      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains two globular domains 727776