Cryba1 (crystallin beta A1) - Rat Genome Database

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Gene: Cryba1 (crystallin beta A1) Heterocephalus glaber
Analyze
Symbol: Cryba1
Name: crystallin beta A1
RGD ID: 18914313
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN camera-type eye development (ortholog); lens development in camera-type eye (ortholog); negative regulation of cytokine production (ortholog); ASSOCIATED WITH age related macular degeneration 1 (ortholog); cataract (ortholog); cataract 10 multiple types (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Beta-crystallin A3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247861,771,328 - 1,777,503 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247861,757,272 - 1,777,735 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Cryba1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247861,771,328 - 1,777,503 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247861,757,272 - 1,777,735 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CRYBA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381729,246,859 - 29,254,494 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1729,246,859 - 29,254,494 (+)EnsemblGRCh38hg38GRCh38
GRCh371727,573,877 - 27,581,512 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,598,001 - 24,605,638 (+)NCBINCBI36Build 36hg18NCBI36
Build 341724,598,000 - 24,605,626NCBI
Celera1724,433,393 - 24,441,030 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1723,782,531 - 23,790,168 (+)NCBIHuRef
CHM1_11727,636,586 - 27,644,223 (+)NCBICHM1_1
T2T-CHM13v2.01730,189,627 - 30,197,262 (+)NCBIT2T-CHM13v2.0
Cryba1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,609,440 - 77,616,119 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1177,609,441 - 77,616,109 (-)EnsemblGRCm39 Ensembl
GRCm381177,718,614 - 77,725,293 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,718,615 - 77,725,283 (-)EnsemblGRCm38mm10GRCm38
MGSCv371177,532,234 - 77,538,795 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361177,534,927 - 77,541,488 (-)NCBIMGSCv36mm8
Celera1185,217,233 - 85,223,794 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Cryba1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,106,465 - 63,113,020 (-)NCBIGRCr8
mRatBN7.21062,608,373 - 62,614,726 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1062,608,383 - 62,614,726 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,240,414 - 67,246,766 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01066,745,921 - 66,752,273 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01062,215,925 - 62,222,276 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,160,777 - 65,167,504 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,161,152 - 65,167,494 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,458,061 - 66,480,390 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,758,929 - 63,765,451 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11063,772,566 - 63,776,395 (-)NCBI
Celera1061,589,011 - 61,595,363 (-)NCBICelera
Cytogenetic Map10q24NCBI
Cryba1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554813,952,988 - 3,959,764 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554813,952,976 - 3,986,548 (-)NCBIChiLan1.0ChiLan1.0
CRYBA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21935,206,029 - 35,214,046 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,077,466 - 37,095,190 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01727,522,647 - 27,530,767 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,032,799 - 28,040,525 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,032,809 - 28,040,525 (-)Ensemblpanpan1.1panPan2
CRYBA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,372,507 - 43,378,561 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,372,505 - 43,378,590 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,527,304 - 42,533,358 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0944,189,857 - 44,195,902 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl944,189,855 - 44,195,929 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,972,718 - 42,978,772 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0943,264,979 - 43,271,025 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0943,344,166 - 43,350,220 (+)NCBIUU_Cfam_GSD_1.0
Cryba1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560242,514,188 - 42,522,476 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365385,392,105 - 5,400,070 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365385,392,159 - 5,400,583 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYBA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1245,466,520 - 45,473,092 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11245,466,051 - 45,473,110 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21229,178,767 - 29,181,605 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRYBA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11623,005,892 - 23,011,357 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1623,003,874 - 23,011,206 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660757,093,414 - 7,100,122 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000014478   ⟹   ENSHGLP00000014334
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247861,771,328 - 1,777,503 (+)Ensembl
RefSeq Acc Id: XM_004857053   ⟹   XP_004857110
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247861,757,277 - 1,777,735 (+)NCBI
RefSeq Acc Id: XM_004857055   ⟹   XP_004857112
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247861,757,272 - 1,777,735 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004857110 (Get FASTA)   NCBI Sequence Viewer  
  XP_004857112 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13331 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014334
  ENSHGLP00100026182
Reference Protein Sequences
RefSeq Acc Id: XP_004857112   ⟸   XM_004857055
- Peptide Label: isoform X2
- UniProtKB: G5BVJ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857110   ⟸   XM_004857053
- Peptide Label: isoform X1
- UniProtKB: G5BVJ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000014334   ⟸   ENSHGLT00000014478


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010257 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100019210 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000014478 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100026449 UniProtKB/TrEMBL
Gene3D-CATH Crystallins UniProtKB/TrEMBL
InterPro Beta/gamma_crystallin UniProtKB/TrEMBL
  G_crystallin-like UniProtKB/TrEMBL
NCBI Gene Cryba1 ENTREZGENE
PANTHER BETA-CRYSTALLIN A3 UniProtKB/TrEMBL
  BETA/GAMMA CRYSTALLIN UniProtKB/TrEMBL
Pfam Crystall UniProtKB/TrEMBL
PRINTS BGCRYSTALLIN UniProtKB/TrEMBL
PROSITE CRYSTALLIN_BETA_GAMMA UniProtKB/TrEMBL
SMART XTALbg UniProtKB/TrEMBL
Superfamily-SCOP gamma-Crystallin-like UniProtKB/TrEMBL
UniProt G5BVJ5 ENTREZGENE, UniProtKB/TrEMBL