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Gene: Abca6 (ATP binding cassette subfamily A member 6) Rattus norvegicus

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Symbol:

Abca6

Name:

ATP binding cassette subfamily A member 6

RGD ID:

1308998

Description:

Predicted to enable ATPase-coupled transmembrane transporter activity and lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in Golgi membrane and plasma membrane. Orthologous to human ABCA6 (ATP binding cassette subfamily A member 6); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ATP-binding cassette sub-family A member 6; ATP-binding cassette, sub-family A (ABC1), member 6; ATP-binding cassette, subfamily A (ABC1), member 6; LOC303639

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	95,642,026 - 95,711,535 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	95,641,900 - 95,710,899 (-)	Ensembl				GRCr8
mRatBN7.2	10	95,142,805 - 95,212,087 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	95,142,966 - 95,211,530 (-)	Ensembl				mRatBN7.2
Rnor_6.0	10	98,477,716 - 98,546,699 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	98,478,067 - 98,544,447 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	98,184,908 - 98,253,813 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	99,626,334 - 99,693,870 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	93,792,868 - 93,862,869 (-)	NCBI		Celera
RGSC_v3.1	10	99,646,914 - 99,727,703 (-)	NCBI
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

allergic contact dermatitis (ISO)

Colorectal Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

aflatoxin B1 (ISO)

benzalkonium chloride (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol AF (EXP)

bisphenol F (ISO)

cadmium atom (ISO)

carbamazepine (ISO)

carnosic acid (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) chloride (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

eugenol (ISO)

furan (EXP)

genistein (EXP,ISO)

hexadecanoic acid (ISO)

lead diacetate (ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

nickel atom (ISO)

nickel sulfate (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

paracetamol (ISO)

parathion (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

pioglitazone (ISO)

pirinixic acid (ISO)

progesterone (ISO)

propylparaben (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

sodium fluoride (ISO)

tetrachloroethene (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

lipid transport (IBA)

transmembrane transport (IEA)

Cellular Component

Golgi membrane (IEA,ISO)

membrane (IEA)

nucleoplasm (IEA,ISO)

plasma membrane (IEA,ISO)

Molecular Function

ABC-type transporter activity (IEA)

ATP binding (IEA)

ATP hydrolysis activity (IEA)

ATPase-coupled transmembrane transporter activity (IBA)

lipid transporter activity (IBA)

nucleotide binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Genomics

Comparative Map Data

Abca6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	95,642,026 - 95,711,535 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	95,641,900 - 95,710,899 (-)	Ensembl				GRCr8
mRatBN7.2	10	95,142,805 - 95,212,087 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	95,142,966 - 95,211,530 (-)	Ensembl				mRatBN7.2
Rnor_6.0	10	98,477,716 - 98,546,699 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	98,478,067 - 98,544,447 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	98,184,908 - 98,253,813 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	99,626,334 - 99,693,870 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	93,792,868 - 93,862,869 (-)	NCBI		Celera
RGSC_v3.1	10	99,646,914 - 99,727,703 (-)	NCBI
Cytogenetic Map	10	q32.1	NCBI

ABCA6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	69,078,702 - 69,141,895 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	69,074,255 - 69,142,031 (-)	Ensembl			hg38	GRCh38
GRCh37	17	67,074,843 - 67,138,036 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	64,586,442 - 64,649,610 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	64,586,441 - 64,649,610	NCBI
Celera	17	63,646,675 - 63,709,544 (-)	NCBI		Celera
Cytogenetic Map	17	q24.2-q24.3	NCBI
HuRef	17	62,460,603 - 62,523,371 (-)	NCBI		HuRef
CHM1_1	17	67,139,673 - 67,202,552 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	69,955,592 - 70,018,487 (-)	NCBI		T2T-CHM13v2.0

Abca6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	110,065,464 - 110,142,811 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	110,067,646 - 110,142,602 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	110,174,638 - 110,251,776 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	110,176,820 - 110,251,776 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	110,038,134 - 110,113,090 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	109,992,910 - 110,067,818 (-)	NCBI		MGSCv36	mm8
Celera	11	121,913,016 - 121,989,859 (-)	NCBI		Celera
Cytogenetic Map	11	E1	NCBI
cM Map	11	73.37	NCBI

Abca6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	3,639,781 - 3,707,449 (+)	Ensembl
ChiLan1.0	NW_004955478	3,639,817 - 3,706,115 (+)	NCBI	ChiLan1.0	ChiLan1.0

ABCA6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	85,081,270 - 85,171,106 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	89,915,074 - 89,982,612 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	63,006,916 - 63,069,941 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	68,396,083 - 68,458,795 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	68,396,083 - 68,458,795 (-)	Ensembl			panPan2	panpan1.1

ABCA6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	15,587,837 - 15,648,639 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	15,420,835 - 15,783,045 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	16,479,377 - 16,594,503 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	17,248,747 - 17,363,720 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	17,248,778 - 17,309,979 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	16,193,140 - 16,308,051 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	11,225,688 - 11,340,377 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	11,225,320 - 11,339,865 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC101961636
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	10,857,232 - 10,911,494 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	8,283,081 - 8,337,398 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	8,283,081 - 8,337,398 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABCA6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	11,225,384 - 11,286,095 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	11,225,068 - 11,369,161 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	11,721,875 - 11,850,381 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ABCA6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	52,450,398 - 52,511,256 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	52,451,146 - 52,511,107 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	23,352,612 - 23,413,343 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Abca6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	79,051,504 - 79,127,421 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Abca6
480 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	95
Count of miRNA genes:	83
Interacting mature miRNAs:	86
Transcripts:	ENSRNOT00000073149
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93723381	107556066	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
631558	Bp137	Blood pressure QTL 137		0.013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	95224344	97335592	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	79272424	102982300	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
2313856	Bp342	Blood pressure QTL 342	4.4	0.0001	life span trait (VT:0005372)	age at time of death (CMO:0001193)	10	87807758	96620484	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87807758	107713808	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67241334	98502431	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61843496	98710773	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	91127270	107556066	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	73695339	97272278	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	81012077	101828297	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	89039175	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	88900501	96620484	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61843496	100198886	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61843496	100198886	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
12880055	Am11	Aortic mass QTL 11		0.004	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	84503487	96432422	Rat
2301398	Kidm38	Kidney mass QTL 38		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	84503487	96432422	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91727883	107713808	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Chm253

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	95,203,206 - 95,203,427 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	98,537,709 - 98,538,082	NCBI	Rnor6.0
Rnor_6.0	10	98,537,860 - 98,538,082	NCBI	Rnor6.0
Rnor_5.0	10	98,244,885 - 98,245,107	UniSTS	Rnor5.0
RGSC_v3.4	10	99,687,292 - 99,687,514	UniSTS	RGSC3.4
Celera	10	93,853,935 - 93,854,157	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
6	7	31	153	90	89	59	33	59	6	209	91	7	129	46	78	30	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001081607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002727835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006220884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006220885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006220886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000073149 ⟹ ENSRNOP00000065682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	95,641,900 - 95,710,899 (-)	Ensembl
mRatBN7.2 Ensembl	10	95,142,966 - 95,211,530 (-)	Ensembl
Rnor_6.0 Ensembl	10	98,478,067 - 98,544,447 (-)	Ensembl

RefSeq Acc Id:

XM_002727835 ⟹ XP_002727881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	95,642,026 - 95,710,925 (-)	NCBI
mRatBN7.2	10	95,142,805 - 95,211,501 (-)	NCBI
Rnor_6.0	10	98,477,716 - 98,546,071 (-)	NCBI
Rnor_5.0	10	98,184,908 - 98,253,813 (-)	NCBI
RGSC_v3.4	10	99,626,334 - 99,693,870 (-)	RGD

Sequence:

show sequence

AGGGTTTGTTTTAGTCTCAACCAATCACAGAACAGTATTTTCCCAGGAGACGAGCTGGCTTACC
CAGAGAGAGGAGAGAGAGAGAGAGAGAGGACACAGAAAACAAAACAGAGTCTTCATGTGCAGCC
CGGATTAACCACATCCCCTTTCTGAAACCAGTGTGAGTAGGAACCCCTGAGAGCAGCCAGCTGC
TTAAGGAATGTTTAGGAAACTGAACCAGAGATAAAGCTCGAACTGATGCACTAGAAAAAAAGAG
AAGCCAGACTGTTTCCAGGAGCGTGAACATCTCCCCCGTAGTATGGGGAGTATGAAGGAGTTGA
GTGTGCGTCAGCAGACCCGAGTGCTTCTGCACAAGAATCTGCTCAAGAAATGGCGGATGAAGAG
AGAGAGCCTATTGGAGTGGAGCATACCGGTTGTTATAGGACTGTATATGGGTCTGTTTTCCTAT
TTCAAAGAAAACAATCAGGTCCCGGAAGTCCCTCCTCAGGATCTTGGAAGCATAGATGAATTCA
ATGGCTCTTCTATAATGGTTGTATATACTCCAATCTCTAATGTAACCCAACAAATAATGAACAA
AACCATAACTGCTCCAACTATGAAAGGAACAAGAATTGTCGGGGTACCAAGTGAAAAGGACTTG
GATGAAATGCTTCTGGATCATGTGCCACGAGCTTTTGGAATCGTATTTAATGACACTTTCTTTT
ACAAGTTAAAAGTGTATCTAATGTATGGAAATCCATTTCTGAAAGAGGACCTACTAGCTCATTG
CTGGGATACATATCCTCACGTTTTCTGTTCACTGACCAGATACTGGAAAAGAGGATTTGTGGCC
TTACAAACTGCCATTAACGCGGCCATTATAGAAGTCACAACAAAGCACCCTGTGATGGAGGAGT
TAATGTCCGTCAACGCGTTCAATATGAAGACCTTACCTTTTATTTCTAAAGACATTTTTCAATA
TGAAATTTTTATCTTGTTCTGCTTGCTCTATTTCTCCTCGTTCATCTATTTTGCGTCACGCAGC
GTTACTAAAGAGAGAAAGCACTCTAAGGAGTTCATGAAAGTAATGGGTCTACAAGACTCTGCAT
TCTGGCTGTCCTGGGGCTTAATCTATGTTGGCTTCATCTTTATTTTTTCTGTATTCATCGCCGT
TATCATAACATCTACCCGGATCATAGTGATGACTGGTTTCCTCGTCATATTTACACTGTTCTTC
TTGTATGGACTATCCGTGATAGCTGTAACTTTCCTGATGGCTGTTCTGTTACAGAAAGCGATCA
TCACCAACCTATTTGTATTTCTCTTTAACCTCTTTTGGGGGTGTGTGGGGTTCACGGTGCTGCA
CAAAGAGCTCCCCTCATCTCTGGAATGGGTCCTGAGCATCTGTAGCCCTTTTGCCTTCACATCC
GGGATGACCAAGATTATCTTCCTGGAGTACAACTTGAATGGTGTCGTATTTCCTGACCCTTCCG
GAGAATCATATGTAATGATAGCAGTATTTTTCATATTGGCTTTTGATGGTCTTCTCTACTTGGT
TTTGGCCTTGTATTTTGACAAAATCTTGCCCTGTGGGGCTGATCGCCGGGCCGCTCCACTGTTT
TTCTTGAATCCGGTGTCTTGTTTTCGAAAAAGGACCAGTAGAAACAAGGTCACTGAGAGAGACA
TAGACCCCGAGCTTCCTTCGGATGAGTATTTTGAGCCCGTGGATCCAGAATACCAAGGGAAAGA
AGCCATCAGAATAAGAAATATTAGAAAGGAATATAAAGGGAAGTCTGGGAAAGTGGAGGCTTTG
AAAGGCTTGTTCTTCGATGTCTATGAGAGTCAAATCACAGCAGTTCTGGGCCATGGTGGAGCAG
GCAAATCTTCATTGCTAAACATCCTCAATGGACTGTCTGTTCCAACTTCAGGGTTAGCCACGGT
GTACAATAAAAATCTCTCTGAGATGCAAGACTTGAAGGAAATCAGAAAGATGATTGGTGTTTGT
CCTCAACATAATGTGCAATTTGATGCGCTCACTGTGAAGGAGAACCTTACCCTCTTCGCTAATA
TAAAAGGGATCGTTCCGCAGAGCGTAGCGCAAGAGGTACAACAAATCCTGTCGGAGTTGGACAT
GCAGACGATCCAGGATGAACTGGCTGAACATTTAAGTGAAGGACAGAAAAGAAAGCTCACCTTT
GGCGTGGCCATTCTAGGAGACCCTCGCATTTTGCTCTTAGATGAACCTACTGCGGGACTCGATC
CCTTCTCAAGGCAGCGAGTGTGGGGTTTCCTGAAGGAACGCAGGGCGGACCGCGTGATCCTCTT
CAGTACGCAGTTCACCGACGAGGCAGACATCCTTGCTGACAGGAAAGTGATCCTCTCCAACGGG
GCTCTCAAGTGTACAGGGTCTTCCGTCTTCCTGAAGAGAAAGTGGGGTCTTGGATATCACTTAA
GTTTGTTCATGAATGAAACGTGCGATTCAGAGCAGTTAACATCCTTCATCAATCACCACATCCC
CGGTGCTAAACTAAAAGCAAAAACCAAAGAAAAGCTTGTGTACACTTTGCCACTGGAAAAGACA
AGCAAGTTCCCAGAGTTCTTCAGTGATCTCGATAAATATTCTGGCCAGGGCTTGATGAATTATG
AAGTCTCCATGTCAACTCTGAATGAAGTCTTCATGAACCTGGAAGGAGAACCAAGTACCACACA
GGACTTTGAGAAAGGGGAGACCCTCACAGACTCTGACAGCTTAAATGAAATGGAGGTGGCTCCC
CCTTCCCTCTCTAAAGCCCAGAAGACCATGAGCGCTATGAGCCTGTGGAGAATGCAGGTCTGTG
CCATAGCACGGCTTCGCGTCCTAAAACTACGGCGAGAGAGGAAAGCATTTCTAACCTTTCTACC
GCTTCTTGGAATTTCATTGATCCCACTGATTACGGAATACATGGCTAATGCTTTGATAGAGGTA
AAAACCAACTGGGAATTTAAAACAGACTTGTATTTCCTGTCTCCCGGACAACTCCCTCAGGGCC
TGCGAACCAGTCTATTGGTCATCAATAACACAGAGTCAAATATTGAAGATTTCGTGCAGTCGCT
GAAGCATCAAAACATAGTTTTGGAAGTAGATGACTTTGAGAACAGAAACGCCACTGAGAGCCTT
TCCTACAACGGAGCCATTATAGTTTCCGGAAGACAAAAGGACTACAGATTTTCAGCTGTGTGTA
ACACCAAGAGGCTACACTGCTTTCCCATATTGATGAATGTTATCAGCAATGGAATCCTTCGCAT
GCTCAATCATACACAGCACATCAGGCTTGAGGAAGATGTACTCTCATCAGGCATCGTGGTGGTC
TGGTTTGGGATACTGGAAGCTTCCCTGTCCATTCTGTTTATTGTGTGCAGTGTTTCTCCACATA
TCGCCATGAGTAGCATCAGTGATTTTAAAAAGAAAGCTGACTCCCAGCTGTGGATTTCTGGCCT
CTACCCTTCTGCCTACTGGTGTGGGCAGGCGCTCGTGGACATTACTCTTCTCAGTGGAATTCTT
CTCACGGGCTACATCACGTTATACACGACAAAACTGATGCACATCTACTTGACAGGCGAAATCG
TGCTGTCTATAGTCCTTCTCGCTTTTGGCTGTGCAGCTTCTCTTGTCTTCTTGACGTACGTGAT
ATCATTTGTTTTTGGCAAAAAGAGGAAAAACAGCGGCCTCTGGTCAATTTGCTTCTTTATTGTC
ATAACGATTATGTTTGACACGGTTTTGATGGATCCCTTCAATGAGGCACTGCTTATTTCTGCCA
TGATGTTAGTTCCTTCCTTTTCATTGAATGCGCTCCTGATTGTCTTGGAAATGAGAGCCTACCA
GTACTATCGAGAATTTGGAGAAAGCAAATATGGTTTATCGGGGGTTGATCTTCTCTTATGCCTA
ATACCTTACTTCCATACTTTGCTGTTCATTTTTGTTCTGAGATGCCTGGAACTGAAGTATGGGA
AGAATGTAGTACGGAAGGACCCCCTCTTCAGGATAGCTCCGCAGAGTCTACATGTTCAGCCAAA
CCCAGAGGAGCCCGTAGACGAAGACGAAGACGTTCAAGCAGAAAGAATGAGGACATCTGATGCC
CTGAGCACCGTGAATTTAGATGAGAAACCGGCCATAATCGCCAGCTGTCTGCACAAAGAGTACA
CAGGTCAGAAGAAATGGTGTTGTTCAAAGAGGAGAAAGAAAATAGCAGTGAGGAACATCTCTTT
CTGCGTTAATAAAGGTGAAATTTTGGGATTGTTAGGACCCGAGGGCGCTGGTAAAAGTTCCTCT
CTCAGGATGATAGCTGGCATCATGAAGCCGACAGCTGGAGAGGTGGAACTGAAAGAGTTAAGCT
CAGCTGTGGCTCACCAGGGCGAGGGCCATGGTGCAGCCAAGCTCGGATACTGCCCTCAGGAGAA
CGTACTGTGGCCCATCCTGACCGTGAAGGAACACCTGGAGGTGTACGCCGCTGTGAAGGGGCTG
AGGAAGAAGGATGCTGTCATTGCCATTTCAAGATTAGTGAATGCTTTCAAACTACACGACCAGC
TGAATGTCCAAGCGCGGAACCTAGTTGTGGGGTTGACTAGAAAGCTGTGCTTCGCGCTGAGCAT
CCTGGGAAACTCACCTGTCCTGATTCTGGATGAACCATCTACAGGCTTAGATGTGTCAGGGAAG
CAACAAATGTGGCAGGCAATCCAGGCAGCCGTTAAAGACAACAAGAAGGGTGTCCTCTTGTCTA
CCCATGACCTGGCTGAGGCAGAGGCTCTGTGTGACCGAGCGGCCATCATGGTGTCTGGAAGGCT
GAGACTCATCGGTTCAATCCAACACCTCAAGAGGAGATTTGGCAAGGATTACATTCTAGAACTC
AGAGTGAAGGAAATTTCTCAAGAGCCATTAGTTCACAAGGAGATTCTGAGGCTGTTCCCCCAGG
CTGCACGCCAGGACAGGTGCTTCTCCTTGCTCACCTACAAGCTTCCCGTGACAGATGTTCATCC
TCTGTCTCAGGCCTTTCACAAACTGGAAGCAGTGAAGCGTGGCTTTAACCTGGACGACTACAGC
CTCTCTCAGTGCACATTGGACAGAGTATTTTTAGAGCTTTCGAAGGAACAGGAGCTGGGAGATG
TTCATGAAGAAGCTGATATAACCATGAGATGGAAACTCCTCCCTCCCTCAGATGAACTGTAAAG
TCTCAGGCCTAATCATTCTGTTATCCCACCAACTTCTTTTATACAGTAACGAACAGAATGAATA
GTTTCAAAGATGTTTTCATGTCAACATTACACATATTTTATTTGCTCAATCAACATCAAGTTAA
AATTTACAATTATTCATGTCTCAAAACTTAAAGGCTATATAAGGAAATACAAACTACTAGGAAC
ATGAAATCACCCAGAATCAGGCCTCCGGCTACTGTAGAGACAAAACTACAAAACTGAATTTTAA
ATAGAAATTAATTTATCACGATTATCAGAAACTTCACTTTCAAAAACATATGAGGAATGTTCCT
CTTCTGTCCTACATGGGCTCCTGCACATATATGTGCACAGACATACACTCATGTATAGATAAAA
TACACAGGTTTTGAAAAGAATATCTGTATAATGGAAAAAATGTAAAAATTAAATAAAACTTAAC
AAAAGAGACCCTATAGTTCCTTCATATAAAAATTCAATTGTTTGCTTTCTTTAATCCATTTTTT
GTAGAGTTGTTACCATATACAGTATATGTATTTCCCAACGATCTACTTATATTTACTGTTATAA
CATTGGAATTTTTTTGCTTTCAAACTTAAAGTTGAAACTATATATTTGCATTTAAATTTGTGTT
ATTTATATTCTTCATTCATTTACTTGTGTGCTTTAATCTTTTTATTACCCATCTACAGGAATCA
TATGTAATGAAATAGTGTAGTGGTGTGTTTTACAGTTAAACACCACTATCTGGAAGGTTGAACT
GGTCAAGATGCAAACATTTCAAGTGATGCTACAAGTTGAAAATTTCTTACCTGACCTGTGATGG
GTCAAGGTCCAATCAAGGCTCATTAAAACTATTGCATTAAATTA

hide sequence

RefSeq Acc Id:

XM_006247654 ⟹ XP_006247716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	95,642,026 - 95,711,524 (-)	NCBI
mRatBN7.2	10	95,142,805 - 95,212,066 (-)	NCBI
Rnor_6.0	10	98,477,716 - 98,546,699 (-)	NCBI
Rnor_5.0	10	98,184,908 - 98,253,813 (-)	NCBI

Sequence:

show sequence

GCAGGTCCAAAAGTTTCCGGCGCCTCCCAGATCCACAGTGCAACGAGAATGGAGTAGATGTCAG
GTATGGGGAGTATGAAGGAGTTGAGTGTGCGTCAGCAGACCCGAGTGCTTCTGCACAAGAATCT
GCTCAAGAAATGGCGGATGAAGAGAGAGAGCCTATTGGAGTGGAGCATACCGGTTGTTATAGGA
CTGTATATGGGTCTGTTTTCCTATTTCAAAGAAAACAATCAGGTCCCGGAAGTCCCTCCTCAGG
ATCTTGGAAGCATAGATGAATTCAATGGCTCTTCTATAATGGTTGTATATACTCCAATCTCTAA
TGTAACCCAACAAATAATGAACAAAACCATAACTGCTCCAACTATGAAAGGAACAAGAATTGTC
GGGGTACCAAGTGAAAAGGACTTGGATGAAATGCTTCTGGATCATGTGCCACGAGCTTTTGGAA
TCGTATTTAATGACACTTTCTTTTACAAGTTAAAAGTGTATCTAATGTATGGAAATCCATTTCT
GAAAGAGGACCTACTAGCTCATTGCTGGGATACATATCCTCACGTTTTCTGTTCACTGACCAGA
TACTGGAAAAGAGGATTTGTGGCCTTACAAACTGCCATTAACGCGGCCATTATAGAAGTCACAA
CAAAGCACCCTGTGATGGAGGAGTTAATGTCCGTCAACGCGTTCAATATGAAGACCTTACCTTT
TATTTCTAAAGACATTTTTCAATATGAAATTTTTATCTTGTTCTGCTTGCTCTATTTCTCCTCG
TTCATCTATTTTGCGTCACGCAGCGTTACTAAAGAGAGAAAGCACTCTAAGGAGTTCATGAAAG
TAATGGGTCTACAAGACTCTGCATTCTGGCTGTCCTGGGGCTTAATCTATGTTGGCTTCATCTT
TATTTTTTCTGTATTCATCGCCGTTATCATAACATCTACCCGGATCATAGTGATGACTGGTTTC
CTCGTCATATTTACACTGTTCTTCTTGTATGGACTATCCGTGATAGCTGTAACTTTCCTGATGG
CTGTTCTGTTACAGAAAGCGATCATCACCAACCTATTTGTATTTCTCTTTAACCTCTTTTGGGG
GTGTGTGGGGTTCACGGTGCTGCACAAAGAGCTCCCCTCATCTCTGGAATGGGTCCTGAGCATC
TGTAGCCCTTTTGCCTTCACATCCGGGATGACCAAGATTATCTTCCTGGAGTACAACTTGAATG
GTGTCGTATTTCCTGACCCTTCCGGAGAATCATATGTAATGATAGCAGTATTTTTCATATTGGC
TTTTGATGGTCTTCTCTACTTGGTTTTGGCCTTGTATTTTGACAAAATCTTGCCCTGTGGGGCT
GATCGCCGGGCCGCTCCACTGTTTTTCTTGAATCCGGTGTCTTGTTTTCGAAAAAGGACCAGTA
GAAACAAGGTCACTGAGAGAGACATAGACCCCGAGCTTCCTTCGGATGAGTATTTTGAGCCCGT
GGATCCAGAATACCAAGGGAAAGAAGCCATCAGAATAAGAAATATTAGAAAGGAATATAAAGGG
AAGTCTGGGAAAGTGGAGGCTTTGAAAGGCTTGTTCTTCGATGTCTATGAGAGTCAAATCACAG
CAGTTCTGGGCCATGGTGGAGCAGGCAAATCTTCATTGCTAAACATCCTCAATGGACTGTCTGT
TCCAACTTCAGGGTTAGCCACGGTGTACAATAAAAATCTCTCTGAGATGCAAGACTTGAAGGAA
ATCAGAAAGATGATTGGTGTTTGTCCTCAACATAATGTGCAATTTGATGCGCTCACTGTGAAGG
AGAACCTTACCCTCTTCGCTAATATAAAAGGGATCGTTCCGCAGAGCGTAGCGCAAGAGGTACA
ACAAATCCTGTCGGAGTTGGACATGCAGACGATCCAGGATGAACTGGCTGAACATTTAAGTGAA
GGACAGAAAAGAAAGCTCACCTTTGGCGTGGCCATTCTAGGAGACCCTCGCATTTTGCTCTTAG
ATGAACCTACTGCGGGACTCGATCCCTTCTCAAGGCAGCGAGTGTGGGGTTTCCTGAAGGAACG
CAGGGCGGACCGCGTGATCCTCTTCAGTACGCAGTTCACCGACGAGGCAGACATCCTTGCTGAC
AGGAAAGTGATCCTCTCCAACGGGGCTCTCAAGTGTACAGGGTCTTCCGTCTTCCTGAAGAGAA
AGTGGGGTCTTGGATATCACTTAAGTTTGTTCATGAATGAAACGTGCGATTCAGAGCAGTTAAC
ATCCTTCATCAATCACCACATCCCCGGTGCTAAACTAAAAGCAAAAACCAAAGAAAAGCTTGTG
TACACTTTGCCACTGGAAAAGACAAGCAAGTTCCCAGAGTTCTTCAGTGATCTCGATAAATATT
CTGGCCAGGGCTTGATGAATTATGAAGTCTCCATGTCAACTCTGAATGAAGTCTTCATGAACCT
GGAAGGAGAACCAAGTACCACACAGGACTTTGAGAAAGGGGAGACCCTCACAGACTCTGACAGC
TTAAATGAAATGGAGGTGGCTCCCCCTTCCCTCTCTAAAGCCCAGAAGACCATGAGCGCTATGA
GCCTGTGGAGAATGCAGGTCTGTGCCATAGCACGGCTTCGCGTCCTAAAACTACGGCGAGAGAG
GAAAGCATTTCTAACCTTTCTACCGCTTCTTGGAATTTCATTGATCCCACTGATTACGGAATAC
ATGGCTAATGCTTTGATAGAGGTAAAAACCAACTGGGAATTTAAAACAGACTTGTATTTCCTGT
CTCCCGGACAACTCCCTCAGGGCCTGCGAACCAGTCTATTGGTCATCAATAACACAGAGTCAAA
TATTGAAGATTTCGTGCAGTCGCTGAAGCATCAAAACATAGTTTTGGAAGTAGATGACTTTGAG
AACAGAAACGCCACTGAGAGCCTTTCCTACAACGGAGCCATTATAGTTTCCGGAAGACAAAAGG
ACTACAGATTTTCAGCTGTGTGTAACACCAAGAGGCTACACTGCTTTCCCATATTGATGAATGT
TATCAGCAATGGAATCCTTCGCATGCTCAATCATACACAGCACATCAGGCTTGAGGAAGATGTA
CTCTCATCAGGCATCGTGGTGGTCTGGTTTGGGATACTGGAAGCTTCCCTGTCCATTCTGTTTA
TTGTGTGCAGTGTTTCTCCACATATCGCCATGAGTAGCATCAGTGATTTTAAAAAGAAAGCTGA
CTCCCAGCTGTGGATTTCTGGCCTCTACCCTTCTGCCTACTGGTGTGGGCAGGCGCTCGTGGAC
ATTACTCTTCTCAGTGGAATTCTTCTCACGGGCTACATCACGTTATACACGACAAAACTGATGC
ACATCTACTTGACAGGCGAAATCGTGCTGTCTATAGTCCTTCTCGCTTTTGGCTGTGCAGCTTC
TCTTGTCTTCTTGACGTACGTGATATCATTTGTTTTTGGCAAAAAGAGGAAAAACAGCGGCCTC
TGGTCAATTTGCTTCTTTATTGTCATAACGATTATGTTTGACACGGTTTTGATGGATCCCTTCA
ATGAGGCACTGCTTATTTCTGCCATGATGTTAGTTCCTTCCTTTTCATTGAATGCGCTCCTGAT
TGTCTTGGAAATGAGAGCCTACCAGTACTATCGAGAATTTGGAGAAAGCAAATATGGTTTATCG
GGGGTTGATCTTCTCTTATGCCTAATACCTTACTTCCATACTTTGCTGTTCATTTTTGTTCTGA
GATGCCTGGAACTGAAGTATGGGAAGAATGTAGTACGGAAGGACCCCCTCTTCAGGATAGCTCC
GCAGAGTCTACATGTTCAGCCAAACCCAGAGGAGCCCGTAGACGAAGACGAAGACGTTCAAGCA
GAAAGAATGAGGACATCTGATGCCCTGAGCACCGTGAATTTAGATGAGAAACCGGCCATAATCG
CCAGCTGTCTGCACAAAGAGTACACAGGTCAGAAGAAATGGTGTTGTTCAAAGAGGAGAAAGAA
AATAGCAGTGAGGAACATCTCTTTCTGCGTTAATAAAGGTGAAATTTTGGGATTGTTAGGACCC
GAGGGCGCTGGTAAAAGTTCCTCTCTCAGGATGATAGCTGGCATCATGAAGCCGACAGCTGGAG
AGGTGGAACTGAAAGAGTTAAGCTCAGCTGTGGCTCACCAGGGCGAGGGCCATGGTGCAGCCAA
GCTCGGATACTGCCCTCAGGAGAACGTACTGTGGCCCATCCTGACCGTGAAGGAACACCTGGAG
GTGTACGCCGCTGTGAAGGGGCTGAGGAAGAAGGATGCTGTCATTGCCATTTCAAGATTAGTGA
ATGCTTTCAAACTACACGACCAGCTGAATGTCCAAGCGCGGAACCTAGTTGTGGGGTTGACTAG
AAAGCTGTGCTTCGCGCTGAGCATCCTGGGAAACTCACCTGTCCTGATTCTGGATGAACCATCT
ACAGGCTTAGATGTGTCAGGGAAGCAACAAATGTGGCAGGCAATCCAGGCAGCCGTTAAAGACA
ACAAGAAGGGTGTCCTCTTGTCTACCCATGACCTGGCTGAGGCAGAGGCTCTGTGTGACCGAGC
GGCCATCATGGTGTCTGGAAGGCTGAGACTCATCGGTTCAATCCAACACCTCAAGAGGAGATTT
GGCAAGGATTACATTCTAGAACTCAGAGTGAAGGAAATTTCTCAAGAGCCATTAGTTCACAAGG
AGATTCTGAGGCTGTTCCCCCAGGCTGCACGCCAGGACAGGTGCTTCTCCTTGCTCACCTACAA
GCTTCCCGTGACAGATGTTCATCCTCTGTCTCAGGCCTTTCACAAACTGGAAGCAGTGAAGCGT
GGCTTTAACCTGGACGACTACAGCCTCTCTCAGTGCACATTGGACAGAGTATTTTTAGAGCTTT
CGAAGGAACAGGAGCTGGGAGATGTTCATGAAGAAGCTGATATAACCATGAGATGGAAACTCCT
CCCTCCCTCAGATGAACTGTAAAGTCTCAGGCCTAATCATTCTGTTATCCCACCAACTTCTTTT
ATACAGTAACGAACAGAATGAATAGTTTCAAAGATGTTTTCATGTCAACATTACACATATTTTA
TTTGCTCAATCAACATCAAGTTAAAATTTACAATTATTCATGTCTCAAAACTTAAAGGCTATAT
AAGGAAATACAAACTACTAGGAACATGAAATCACCCAGAATCAGGCCTCCGGCTACTGTAGAGA
CAAAACTACAAAACTGAATTTTAAATAGAAATTAATTTATCACGATTATCAGAAACTTCACTTT
CAAAAACATATGAGGAATGTTCCTCTTCTGTCCTACATGGGCTCCTGCACATATATGTGCACAG
ACATACACTCATGTATAGATAAAATACACAGGTTTTGAAAAGAATATCTGTATAATGGAAAAAA
TGTAAAAATTAAATAAAACTTAACAAAAGAGACCCTATAGTTCCTTCATATAAAAATTCAATTG
TTTGCTTTCTTTAATCCATTTTTTGTAGAGTTGTTACCATATACAGTATATGTATTTCCCAACG
ATCTACTTATATTTACTGTTATAACATTGGAATTTTTTTGCTTTCAAACTTAAAGTTGAAACTA
TATATTTGCATTTAAATTTGTGTTATTTATATTCTTCATTCATTTACTTGTGTGCTTTAATCTT
TTTATTACCCATCTACAGGAATCATATGTAATGAAATAGTGTAGTGGTGTGTTTTACAGTTAAA
CACCACTATCTGGAAGGTTGAACTGGTCAAGATGCAAACATTTCAAGTGATGCTACAAGTTGAA
AATTTCTTACCTGACCTGTGATGGGTCAAGGTCCAATCAAGGCTCATTAAAACTATTGCATTAA
ATTA

hide sequence

RefSeq Acc Id:

XM_006247655 ⟹ XP_006247717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	95,642,026 - 95,710,926 (-)	NCBI
mRatBN7.2	10	95,142,805 - 95,211,501 (-)	NCBI
Rnor_6.0	10	98,477,716 - 98,546,072 (-)	NCBI
Rnor_5.0	10	98,184,908 - 98,253,813 (-)	NCBI

Sequence:

show sequence

TAGGGTTTGTTTTAGTCTCAACCAATCACAGAACAGTATTTTCCCAGGAGACGAGCTGGCTTAC
CCAGAGAGAGGAGAGAGAGAGAGAGAGAGGACACAGAAAACAAAACAGAGTCTTCATGTGCAGC
CCGGATTAACCACATCCCCTTTCTGAAACCAGTGTATGGGGAGTATGAAGGAGTTGAGTGTGCG
TCAGCAGACCCGAGTGCTTCTGCACAAGAATCTGCTCAAGAAATGGCGGATGAAGAGAGAGAGC
CTATTGGAGTGGAGCATACCGGTTGTTATAGGACTGTATATGGGTCTGTTTTCCTATTTCAAAG
AAAACAATCAGGTCCCGGAAGTCCCTCCTCAGGATCTTGGAAGCATAGATGAATTCAATGGCTC
TTCTATAATGGTTGTATATACTCCAATCTCTAATGTAACCCAACAAATAATGAACAAAACCATA
ACTGCTCCAACTATGAAAGGAACAAGAATTGTCGGGGTACCAAGTGAAAAGGACTTGGATGAAA
TGCTTCTGGATCATGTGCCACGAGCTTTTGGAATCGTATTTAATGACACTTTCTTTTACAAGTT
AAAAGTGTATCTAATGTATGGAAATCCATTTCTGAAAGAGGACCTACTAGCTCATTGCTGGGAT
ACATATCCTCACGTTTTCTGTTCACTGACCAGATACTGGAAAAGAGGATTTGTGGCCTTACAAA
CTGCCATTAACGCGGCCATTATAGAAGTCACAACAAAGCACCCTGTGATGGAGGAGTTAATGTC
CGTCAACGCGTTCAATATGAAGACCTTACCTTTTATTTCTAAAGACATTTTTCAATATGAAATT
TTTATCTTGTTCTGCTTGCTCTATTTCTCCTCGTTCATCTATTTTGCGTCACGCAGCGTTACTA
AAGAGAGAAAGCACTCTAAGGAGTTCATGAAAGTAATGGGTCTACAAGACTCTGCATTCTGGCT
GTCCTGGGGCTTAATCTATGTTGGCTTCATCTTTATTTTTTCTGTATTCATCGCCGTTATCATA
ACATCTACCCGGATCATAGTGATGACTGGTTTCCTCGTCATATTTACACTGTTCTTCTTGTATG
GACTATCCGTGATAGCTGTAACTTTCCTGATGGCTGTTCTGTTACAGAAAGCGATCATCACCAA
CCTATTTGTATTTCTCTTTAACCTCTTTTGGGGGTGTGTGGGGTTCACGGTGCTGCACAAAGAG
CTCCCCTCATCTCTGGAATGGGTCCTGAGCATCTGTAGCCCTTTTGCCTTCACATCCGGGATGA
CCAAGATTATCTTCCTGGAGTACAACTTGAATGGTGTCGTATTTCCTGACCCTTCCGGAGAATC
ATATGTAATGATAGCAGTATTTTTCATATTGGCTTTTGATGGTCTTCTCTACTTGGTTTTGGCC
TTGTATTTTGACAAAATCTTGCCCTGTGGGGCTGATCGCCGGGCCGCTCCACTGTTTTTCTTGA
ATCCGGTGTCTTGTTTTCGAAAAAGGACCAGTAGAAACAAGGTCACTGAGAGAGACATAGACCC
CGAGCTTCCTTCGGATGAGTATTTTGAGCCCGTGGATCCAGAATACCAAGGGAAAGAAGCCATC
AGAATAAGAAATATTAGAAAGGAATATAAAGGGAAGTCTGGGAAAGTGGAGGCTTTGAAAGGCT
TGTTCTTCGATGTCTATGAGAGTCAAATCACAGCAGTTCTGGGCCATGGTGGAGCAGGCAAATC
TTCATTGCTAAACATCCTCAATGGACTGTCTGTTCCAACTTCAGGGTTAGCCACGGTGTACAAT
AAAAATCTCTCTGAGATGCAAGACTTGAAGGAAATCAGAAAGATGATTGGTGTTTGTCCTCAAC
ATAATGTGCAATTTGATGCGCTCACTGTGAAGGAGAACCTTACCCTCTTCGCTAATATAAAAGG
GATCGTTCCGCAGAGCGTAGCGCAAGAGGTACAACAAATCCTGTCGGAGTTGGACATGCAGACG
ATCCAGGATGAACTGGCTGAACATTTAAGTGAAGGACAGAAAAGAAAGCTCACCTTTGGCGTGG
CCATTCTAGGAGACCCTCGCATTTTGCTCTTAGATGAACCTACTGCGGGACTCGATCCCTTCTC
AAGGCAGCGAGTGTGGGGTTTCCTGAAGGAACGCAGGGCGGACCGCGTGATCCTCTTCAGTACG
CAGTTCACCGACGAGGCAGACATCCTTGCTGACAGGAAAGTGATCCTCTCCAACGGGGCTCTCA
AGTGTACAGGGTCTTCCGTCTTCCTGAAGAGAAAGTGGGGTCTTGGATATCACTTAAGTTTGTT
CATGAATGAAACGTGCGATTCAGAGCAGTTAACATCCTTCATCAATCACCACATCCCCGGTGCT
AAACTAAAAGCAAAAACCAAAGAAAAGCTTGTGTACACTTTGCCACTGGAAAAGACAAGCAAGT
TCCCAGAGTTCTTCAGTGATCTCGATAAATATTCTGGCCAGGGCTTGATGAATTATGAAGTCTC
CATGTCAACTCTGAATGAAGTCTTCATGAACCTGGAAGGAGAACCAAGTACCACACAGGACTTT
GAGAAAGGGGAGACCCTCACAGACTCTGACAGCTTAAATGAAATGGAGGTGGCTCCCCCTTCCC
TCTCTAAAGCCCAGAAGACCATGAGCGCTATGAGCCTGTGGAGAATGCAGGTCTGTGCCATAGC
ACGGCTTCGCGTCCTAAAACTACGGCGAGAGAGGAAAGCATTTCTAACCTTTCTACCGCTTCTT
GGAATTTCATTGATCCCACTGATTACGGAATACATGGCTAATGCTTTGATAGAGGTAAAAACCA
ACTGGGAATTTAAAACAGACTTGTATTTCCTGTCTCCCGGACAACTCCCTCAGGGCCTGCGAAC
CAGTCTATTGGTCATCAATAACACAGAGTCAAATATTGAAGATTTCGTGCAGTCGCTGAAGCAT
CAAAACATAGTTTTGGAAGTAGATGACTTTGAGAACAGAAACGCCACTGAGAGCCTTTCCTACA
ACGGAGCCATTATAGTTTCCGGAAGACAAAAGGACTACAGATTTTCAGCTGTGTGTAACACCAA
GAGGCTACACTGCTTTCCCATATTGATGAATGTTATCAGCAATGGAATCCTTCGCATGCTCAAT
CATACACAGCACATCAGGCTTGAGGAAGATGTACTCTCATCAGGCATCGTGGTGGTCTGGTTTG
GGATACTGGAAGCTTCCCTGTCCATTCTGTTTATTGTGTGCAGTGTTTCTCCACATATCGCCAT
GAGTAGCATCAGTGATTTTAAAAAGAAAGCTGACTCCCAGCTGTGGATTTCTGGCCTCTACCCT
TCTGCCTACTGGTGTGGGCAGGCGCTCGTGGACATTACTCTTCTCAGTGGAATTCTTCTCACGG
GCTACATCACGTTATACACGACAAAACTGATGCACATCTACTTGACAGGCGAAATCGTGCTGTC
TATAGTCCTTCTCGCTTTTGGCTGTGCAGCTTCTCTTGTCTTCTTGACGTACGTGATATCATTT
GTTTTTGGCAAAAAGAGGAAAAACAGCGGCCTCTGGTCAATTTGCTTCTTTATTGTCATAACGA
TTATGTTTGACACGGTTTTGATGGATCCCTTCAATGAGGCACTGCTTATTTCTGCCATGATGTT
AGTTCCTTCCTTTTCATTGAATGCGCTCCTGATTGTCTTGGAAATGAGAGCCTACCAGTACTAT
CGAGAATTTGGAGAAAGCAAATATGGTTTATCGGGGGTTGATCTTCTCTTATGCCTAATACCTT
ACTTCCATACTTTGCTGTTCATTTTTGTTCTGAGATGCCTGGAACTGAAGTATGGGAAGAATGT
AGTACGGAAGGACCCCCTCTTCAGGATAGCTCCGCAGAGTCTACATGTTCAGCCAAACCCAGAG
GAGCCCGTAGACGAAGACGAAGACGTTCAAGCAGAAAGAATGAGGACATCTGATGCCCTGAGCA
CCGTGAATTTAGATGAGAAACCGGCCATAATCGCCAGCTGTCTGCACAAAGAGTACACAGGTCA
GAAGAAATGGTGTTGTTCAAAGAGGAGAAAGAAAATAGCAGTGAGGAACATCTCTTTCTGCGTT
AATAAAGGTGAAATTTTGGGATTGTTAGGACCCGAGGGCGCTGGTAAAAGTTCCTCTCTCAGGA
TGATAGCTGGCATCATGAAGCCGACAGCTGGAGAGGTGGAACTGAAAGAGTTAAGCTCAGCTGT
GGCTCACCAGGGCGAGGGCCATGGTGCAGCCAAGCTCGGATACTGCCCTCAGGAGAACGTACTG
TGGCCCATCCTGACCGTGAAGGAACACCTGGAGGTGTACGCCGCTGTGAAGGGGCTGAGGAAGA
AGGATGCTGTCATTGCCATTTCAAGATTAGTGAATGCTTTCAAACTACACGACCAGCTGAATGT
CCAAGCGCGGAACCTAGTTGTGGGGTTGACTAGAAAGCTGTGCTTCGCGCTGAGCATCCTGGGA
AACTCACCTGTCCTGATTCTGGATGAACCATCTACAGGCTTAGATGTGTCAGGGAAGCAACAAA
TGTGGCAGGCAATCCAGGCAGCCGTTAAAGACAACAAGAAGGGTGTCCTCTTGTCTACCCATGA
CCTGGCTGAGGCAGAGGCTCTGTGTGACCGAGCGGCCATCATGGTGTCTGGAAGGCTGAGACTC
ATCGGTTCAATCCAACACCTCAAGAGGAGATTTGGCAAGGATTACATTCTAGAACTCAGAGTGA
AGGAAATTTCTCAAGAGCCATTAGTTCACAAGGAGATTCTGAGGCTGTTCCCCCAGGCTGCACG
CCAGGACAGGTGCTTCTCCTTGCTCACCTACAAGCTTCCCGTGACAGATGTTCATCCTCTGTCT
CAGGCCTTTCACAAACTGGAAGCAGTGAAGCGTGGCTTTAACCTGGACGACTACAGCCTCTCTC
AGTGCACATTGGACAGAGTATTTTTAGAGCTTTCGAAGGAACAGGAGCTGGGAGATGTTCATGA
AGAAGCTGATATAACCATGAGATGGAAACTCCTCCCTCCCTCAGATGAACTGTAAAGTCTCAGG
CCTAATCATTCTGTTATCCCACCAACTTCTTTTATACAGTAACGAACAGAATGAATAGTTTCAA
AGATGTTTTCATGTCAACATTACACATATTTTATTTGCTCAATCAACATCAAGTTAAAATTTAC
AATTATTCATGTCTCAAAACTTAAAGGCTATATAAGGAAATACAAACTACTAGGAACATGAAAT
CACCCAGAATCAGGCCTCCGGCTACTGTAGAGACAAAACTACAAAACTGAATTTTAAATAGAAA
TTAATTTATCACGATTATCAGAAACTTCACTTTCAAAAACATATGAGGAATGTTCCTCTTCTGT
CCTACATGGGCTCCTGCACATATATGTGCACAGACATACACTCATGTATAGATAAAATACACAG
GTTTTGAAAAGAATATCTGTATAATGGAAAAAATGTAAAAATTAAATAAAACTTAACAAAAGAG
ACCCTATAGTTCCTTCATATAAAAATTCAATTGTTTGCTTTCTTTAATCCATTTTTTGTAGAGT
TGTTACCATATACAGTATATGTATTTCCCAACGATCTACTTATATTTACTGTTATAACATTGGA
ATTTTTTTGCTTTCAAACTTAAAGTTGAAACTATATATTTGCATTTAAATTTGTGTTATTTATA
TTCTTCATTCATTTACTTGTGTGCTTTAATCTTTTTATTACCCATCTACAGGAATCATATGTAA
TGAAATAGTGTAGTGGTGTGTTTTACAGTTAAACACCACTATCTGGAAGGTTGAACTGGTCAAG
ATGCAAACATTTCAAGTGATGCTACAAGTTGAAAATTTCTTACCTGACCTGTGATGGGTCAAGG
TCCAATCAAGGCTCATTAAAACTATTGCATTAAATTA

hide sequence

RefSeq Acc Id:

XM_006247656 ⟹ XP_006247718

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	95,642,026 - 95,711,535 (-)	NCBI
mRatBN7.2	10	95,142,805 - 95,212,087 (-)	NCBI
Rnor_6.0	10	98,477,716 - 98,546,697 (-)	NCBI
Rnor_5.0	10	98,184,908 - 98,253,813 (-)	NCBI

Sequence:

show sequence

AGGTCCAAAAGTTTCCGGCGCCTCCCAGATCCACAGTGCAACGAGAATGGAGTAGATGTCAGGT
AGATTAGTATCAACGCATTAAAATCTGTATGGGGAGTATGAAGGAGTTGAGTGTGCGTCAGCAG
ACCCGAGTGCTTCTGCACAAGAATCTGCTCAAGAAATGGCGGATGAAGAGAGAGAGCCTATTGG
AGTGGAGCATACCGGTTGTTATAGGACTGTATATGGGTCTGTTTTCCTATTTCAAAGAAAACAA
TCAGGTCCCGGAAGTCCCTCCTCAGGATCTTGGAAGCATAGATGAATTCAATGGCTCTTCTATA
ATGGTTGTATATACTCCAATCTCTAATGTAACCCAACAAATAATGAACAAAACCATAACTGCTC
CAACTATGAAAGGAACAAGAATTGTCGGGGTACCAAGTGAAAAGGACTTGGATGAAATGCTTCT
GGATCATGTGCCACGAGCTTTTGGAATCGTATTTAATGACACTTTCTTTTACAAGTTAAAAGTG
TATCTAATGTATGGAAATCCATTTCTGAAAGAGGACCTACTAGCTCATTGCTGGGATACATATC
CTCACGTTTTCTGTTCACTGACCAGATACTGGAAAAGAGGATTTGTGGCCTTACAAACTGCCAT
TAACGCGGCCATTATAGAAGTCACAACAAAGCACCCTGTGATGGAGGAGTTAATGTCCGTCAAC
GCGTTCAATATGAAGACCTTACCTTTTATTTCTAAAGACATTTTTCAATATGAAATTTTTATCT
TGTTCTGCTTGCTCTATTTCTCCTCGTTCATCTATTTTGCGTCACGCAGCGTTACTAAAGAGAG
AAAGCACTCTAAGGAGTTCATGAAAGTAATGGGTCTACAAGACTCTGCATTCTGGCTGTCCTGG
GGCTTAATCTATGTTGGCTTCATCTTTATTTTTTCTGTATTCATCGCCGTTATCATAACATCTA
CCCGGATCATAGTGATGACTGGTTTCCTCGTCATATTTACACTGTTCTTCTTGTATGGACTATC
CGTGATAGCTGTAACTTTCCTGATGGCTGTTCTGTTACAGAAAGCGATCATCACCAACCTATTT
GTATTTCTCTTTAACCTCTTTTGGGGGTGTGTGGGGTTCACGGTGCTGCACAAAGAGCTCCCCT
CATCTCTGGAATGGGTCCTGAGCATCTGTAGCCCTTTTGCCTTCACATCCGGGATGACCAAGAT
TATCTTCCTGGAGTACAACTTGAATGGTGTCGTATTTCCTGACCCTTCCGGAGAATCATATGTA
ATGATAGCAGTATTTTTCATATTGGCTTTTGATGGTCTTCTCTACTTGGTTTTGGCCTTGTATT
TTGACAAAATCTTGCCCTGTGGGGCTGATCGCCGGGCCGCTCCACTGTTTTTCTTGAATCCGGT
GTCTTGTTTTCGAAAAAGGACCAGTAGAAACAAGGTCACTGAGAGAGACATAGACCCCGAGCTT
CCTTCGGATGAGTATTTTGAGCCCGTGGATCCAGAATACCAAGGGAAAGAAGCCATCAGAATAA
GAAATATTAGAAAGGAATATAAAGGGAAGTCTGGGAAAGTGGAGGCTTTGAAAGGCTTGTTCTT
CGATGTCTATGAGAGTCAAATCACAGCAGTTCTGGGCCATGGTGGAGCAGGCAAATCTTCATTG
CTAAACATCCTCAATGGACTGTCTGTTCCAACTTCAGGGTTAGCCACGGTGTACAATAAAAATC
TCTCTGAGATGCAAGACTTGAAGGAAATCAGAAAGATGATTGGTGTTTGTCCTCAACATAATGT
GCAATTTGATGCGCTCACTGTGAAGGAGAACCTTACCCTCTTCGCTAATATAAAAGGGATCGTT
CCGCAGAGCGTAGCGCAAGAGGTACAACAAATCCTGTCGGAGTTGGACATGCAGACGATCCAGG
ATGAACTGGCTGAACATTTAAGTGAAGGACAGAAAAGAAAGCTCACCTTTGGCGTGGCCATTCT
AGGAGACCCTCGCATTTTGCTCTTAGATGAACCTACTGCGGGACTCGATCCCTTCTCAAGGCAG
CGAGTGTGGGGTTTCCTGAAGGAACGCAGGGCGGACCGCGTGATCCTCTTCAGTACGCAGTTCA
CCGACGAGGCAGACATCCTTGCTGACAGGAAAGTGATCCTCTCCAACGGGGCTCTCAAGTGTAC
AGGGTCTTCCGTCTTCCTGAAGAGAAAGTGGGGTCTTGGATATCACTTAAGTTTGTTCATGAAT
GAAACGTGCGATTCAGAGCAGTTAACATCCTTCATCAATCACCACATCCCCGGTGCTAAACTAA
AAGCAAAAACCAAAGAAAAGCTTGTGTACACTTTGCCACTGGAAAAGACAAGCAAGTTCCCAGA
GTTCTTCAGTGATCTCGATAAATATTCTGGCCAGGGCTTGATGAATTATGAAGTCTCCATGTCA
ACTCTGAATGAAGTCTTCATGAACCTGGAAGGAGAACCAAGTACCACACAGGACTTTGAGAAAG
GGGAGACCCTCACAGACTCTGACAGCTTAAATGAAATGGAGGTGGCTCCCCCTTCCCTCTCTAA
AGCCCAGAAGACCATGAGCGCTATGAGCCTGTGGAGAATGCAGGTCTGTGCCATAGCACGGCTT
CGCGTCCTAAAACTACGGCGAGAGAGGAAAGCATTTCTAACCTTTCTACCGCTTCTTGGAATTT
CATTGATCCCACTGATTACGGAATACATGGCTAATGCTTTGATAGAGGTAAAAACCAACTGGGA
ATTTAAAACAGACTTGTATTTCCTGTCTCCCGGACAACTCCCTCAGGGCCTGCGAACCAGTCTA
TTGGTCATCAATAACACAGAGTCAAATATTGAAGATTTCGTGCAGTCGCTGAAGCATCAAAACA
TAGTTTTGGAAGTAGATGACTTTGAGAACAGAAACGCCACTGAGAGCCTTTCCTACAACGGAGC
CATTATAGTTTCCGGAAGACAAAAGGACTACAGATTTTCAGCTGTGTGTAACACCAAGAGGCTA
CACTGCTTTCCCATATTGATGAATGTTATCAGCAATGGAATCCTTCGCATGCTCAATCATACAC
AGCACATCAGGCTTGAGGAAGATGTACTCTCATCAGGCATCGTGGTGGTCTGGTTTGGGATACT
GGAAGCTTCCCTGTCCATTCTGTTTATTGTGTGCAGTGTTTCTCCACATATCGCCATGAGTAGC
ATCAGTGATTTTAAAAAGAAAGCTGACTCCCAGCTGTGGATTTCTGGCCTCTACCCTTCTGCCT
ACTGGTGTGGGCAGGCGCTCGTGGACATTACTCTTCTCAGTGGAATTCTTCTCACGGGCTACAT
CACGTTATACACGACAAAACTGATGCACATCTACTTGACAGGCGAAATCGTGCTGTCTATAGTC
CTTCTCGCTTTTGGCTGTGCAGCTTCTCTTGTCTTCTTGACGTACGTGATATCATTTGTTTTTG
GCAAAAAGAGGAAAAACAGCGGCCTCTGGTCAATTTGCTTCTTTATTGTCATAACGATTATGTT
TGACACGGTTTTGATGGATCCCTTCAATGAGGCACTGCTTATTTCTGCCATGATGTTAGTTCCT
TCCTTTTCATTGAATGCGCTCCTGATTGTCTTGGAAATGAGAGCCTACCAGTACTATCGAGAAT
TTGGAGAAAGCAAATATGGTTTATCGGGGGTTGATCTTCTCTTATGCCTAATACCTTACTTCCA
TACTTTGCTGTTCATTTTTGTTCTGAGATGCCTGGAACTGAAGTATGGGAAGAATGTAGTACGG
AAGGACCCCCTCTTCAGGATAGCTCCGCAGAGTCTACATGTTCAGCCAAACCCAGAGGAGCCCG
TAGACGAAGACGAAGACGTTCAAGCAGAAAGAATGAGGACATCTGATGCCCTGAGCACCGTGAA
TTTAGATGAGAAACCGGCCATAATCGCCAGCTGTCTGCACAAAGAGTACACAGGTCAGAAGAAA
TGGTGTTGTTCAAAGAGGAGAAAGAAAATAGCAGTGAGGAACATCTCTTTCTGCGTTAATAAAG
GTGAAATTTTGGGATTGTTAGGACCCGAGGGCGCTGGTAAAAGTTCCTCTCTCAGGATGATAGC
TGGCATCATGAAGCCGACAGCTGGAGAGGTGGAACTGAAAGAGTTAAGCTCAGCTGTGGCTCAC
CAGGGCGAGGGCCATGGTGCAGCCAAGCTCGGATACTGCCCTCAGGAGAACGTACTGTGGCCCA
TCCTGACCGTGAAGGAACACCTGGAGGTGTACGCCGCTGTGAAGGGGCTGAGGAAGAAGGATGC
TGTCATTGCCATTTCAAGATTAGTGAATGCTTTCAAACTACACGACCAGCTGAATGTCCAAGCG
CGGAACCTAGTTGTGGGGTTGACTAGAAAGCTGTGCTTCGCGCTGAGCATCCTGGGAAACTCAC
CTGTCCTGATTCTGGATGAACCATCTACAGGCTTAGATGTGTCAGGGAAGCAACAAATGTGGCA
GGCAATCCAGGCAGCCGTTAAAGACAACAAGAAGGGTGTCCTCTTGTCTACCCATGACCTGGCT
GAGGCAGAGGCTCTGTGTGACCGAGCGGCCATCATGGTGTCTGGAAGGCTGAGACTCATCGGTT
CAATCCAACACCTCAAGAGGAGATTTGGCAAGGATTACATTCTAGAACTCAGAGTGAAGGAAAT
TTCTCAAGAGCCATTAGTTCACAAGGAGATTCTGAGGCTGTTCCCCCAGGCTGCACGCCAGGAC
AGGTGCTTCTCCTTGCTCACCTACAAGCTTCCCGTGACAGATGTTCATCCTCTGTCTCAGGCCT
TTCACAAACTGGAAGCAGTGAAGCGTGGCTTTAACCTGGACGACTACAGCCTCTCTCAGTGCAC
ATTGGACAGAGTATTTTTAGAGCTTTCGAAGGAACAGGAGCTGGGAGATGTTCATGAAGAAGCT
GATATAACCATGAGATGGAAACTCCTCCCTCCCTCAGATGAACTGTAAAGTCTCAGGCCTAATC
ATTCTGTTATCCCACCAACTTCTTTTATACAGTAACGAACAGAATGAATAGTTTCAAAGATGTT
TTCATGTCAACATTACACATATTTTATTTGCTCAATCAACATCAAGTTAAAATTTACAATTATT
CATGTCTCAAAACTTAAAGGCTATATAAGGAAATACAAACTACTAGGAACATGAAATCACCCAG
AATCAGGCCTCCGGCTACTGTAGAGACAAAACTACAAAACTGAATTTTAAATAGAAATTAATTT
ATCACGATTATCAGAAACTTCACTTTCAAAAACATATGAGGAATGTTCCTCTTCTGTCCTACAT
GGGCTCCTGCACATATATGTGCACAGACATACACTCATGTATAGATAAAATACACAGGTTTTGA
AAAGAATATCTGTATAATGGAAAAAATGTAAAAATTAAATAAAACTTAACAAAAGAGACCCTAT
AGTTCCTTCATATAAAAATTCAATTGTTTGCTTTCTTTAATCCATTTTTTGTAGAGTTGTTACC
ATATACAGTATATGTATTTCCCAACGATCTACTTATATTTACTGTTATAACATTGGAATTTTTT
TGCTTTCAAACTTAAAGTTGAAACTATATATTTGCATTTAAATTTGTGTTATTTATATTCTTCA
TTCATTTACTTGTGTGCTTTAATCTTTTTATTACCCATCTACAGGAATCATATGTAATGAAATA
GTGTAGTGGTGTGTTTTACAGTTAAACACCACTATCTGGAAGGTTGAACTGGTCAAGATGCAAA
CATTTCAAGTGATGCTACAAGTTGAAAATTTCTTACCTGACCTGTGATGGGTCAAGGTCCAATC
AAGGCTCATTAAAACTATTGCATTAAATTA

hide sequence

RefSeq Acc Id:

XM_039087447 ⟹ XP_038943375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	95,642,026 - 95,706,107 (-)	NCBI
mRatBN7.2	10	95,142,805 - 95,206,648 (-)	NCBI

RefSeq Acc Id:

XM_063270045 ⟹ XP_063126115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	95,642,026 - 95,710,926 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001417140	(Get FASTA)	NCBI Sequence Viewer
	NP_001417141	(Get FASTA)	NCBI Sequence Viewer
	NP_001417142	(Get FASTA)	NCBI Sequence Viewer
	NP_001417143	(Get FASTA)	NCBI Sequence Viewer
	XP_002727881	(Get FASTA)	NCBI Sequence Viewer
	XP_006247716	(Get FASTA)	NCBI Sequence Viewer
	XP_006247717	(Get FASTA)	NCBI Sequence Viewer
	XP_006247718	(Get FASTA)	NCBI Sequence Viewer
	XP_038943375	(Get FASTA)	NCBI Sequence Viewer
	XP_063126115	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000065682
	ENSRNOP00000065682.2

RefSeq Acc Id:

XP_002727881 ⟸ XM_002727835

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGSMKELSVRQQTRVLLHKNLLKKWRMKRESLLEWSIPVVIGLYMGLFSYFKENNQVPEVPPQD
LGSIDEFNGSSIMVVYTPISNVTQQIMNKTITAPTMKGTRIVGVPSEKDLDEMLLDHVPRAFGI
VFNDTFFYKLKVYLMYGNPFLKEDLLAHCWDTYPHVFCSLTRYWKRGFVALQTAINAAIIEVTT
KHPVMEELMSVNAFNMKTLPFISKDIFQYEIFILFCLLYFSSFIYFASRSVTKERKHSKEFMKV
MGLQDSAFWLSWGLIYVGFIFIFSVFIAVIITSTRIIVMTGFLVIFTLFFLYGLSVIAVTFLMA
VLLQKAIITNLFVFLFNLFWGCVGFTVLHKELPSSLEWVLSICSPFAFTSGMTKIIFLEYNLNG
VVFPDPSGESYVMIAVFFILAFDGLLYLVLALYFDKILPCGADRRAAPLFFLNPVSCFRKRTSR
NKVTERDIDPELPSDEYFEPVDPEYQGKEAIRIRNIRKEYKGKSGKVEALKGLFFDVYESQITA
VLGHGGAGKSSLLNILNGLSVPTSGLATVYNKNLSEMQDLKEIRKMIGVCPQHNVQFDALTVKE
NLTLFANIKGIVPQSVAQEVQQILSELDMQTIQDELAEHLSEGQKRKLTFGVAILGDPRILLLD
EPTAGLDPFSRQRVWGFLKERRADRVILFSTQFTDEADILADRKVILSNGALKCTGSSVFLKRK
WGLGYHLSLFMNETCDSEQLTSFINHHIPGAKLKAKTKEKLVYTLPLEKTSKFPEFFSDLDKYS
GQGLMNYEVSMSTLNEVFMNLEGEPSTTQDFEKGETLTDSDSLNEMEVAPPSLSKAQKTMSAMS
LWRMQVCAIARLRVLKLRRERKAFLTFLPLLGISLIPLITEYMANALIEVKTNWEFKTDLYFLS
PGQLPQGLRTSLLVINNTESNIEDFVQSLKHQNIVLEVDDFENRNATESLSYNGAIIVSGRQKD
YRFSAVCNTKRLHCFPILMNVISNGILRMLNHTQHIRLEEDVLSSGIVVVWFGILEASLSILFI
VCSVSPHIAMSSISDFKKKADSQLWISGLYPSAYWCGQALVDITLLSGILLTGYITLYTTKLMH
IYLTGEIVLSIVLLAFGCAASLVFLTYVISFVFGKKRKNSGLWSICFFIVITIMFDTVLMDPFN
EALLISAMMLVPSFSLNALLIVLEMRAYQYYREFGESKYGLSGVDLLLCLIPYFHTLLFIFVLR
CLELKYGKNVVRKDPLFRIAPQSLHVQPNPEEPVDEDEDVQAERMRTSDALSTVNLDEKPAIIA
SCLHKEYTGQKKWCCSKRRKKIAVRNISFCVNKGEILGLLGPEGAGKSSSLRMIAGIMKPTAGE
VELKELSSAVAHQGEGHGAAKLGYCPQENVLWPILTVKEHLEVYAAVKGLRKKDAVIAISRLVN
AFKLHDQLNVQARNLVVGLTRKLCFALSILGNSPVLILDEPSTGLDVSGKQQMWQAIQAAVKDN
KKGVLLSTHDLAEAEALCDRAAIMVSGRLRLIGSIQHLKRRFGKDYILELRVKEISQEPLVHKE
ILRLFPQAARQDRCFSLLTYKLPVTDVHPLSQAFHKLEAVKRGFNLDDYSLSQCTLDRVFLELS
KEQELGDVHEEADITMRWKLLPPSDEL

hide sequence

RefSeq Acc Id:

XP_006247716 ⟸ XM_006247654

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSGMGSMKELSVRQQTRVLLHKNLLKKWRMKRESLLEWSIPVVIGLYMGLFSYFKENNQVPEVP
PQDLGSIDEFNGSSIMVVYTPISNVTQQIMNKTITAPTMKGTRIVGVPSEKDLDEMLLDHVPRA
FGIVFNDTFFYKLKVYLMYGNPFLKEDLLAHCWDTYPHVFCSLTRYWKRGFVALQTAINAAIIE
VTTKHPVMEELMSVNAFNMKTLPFISKDIFQYEIFILFCLLYFSSFIYFASRSVTKERKHSKEF
MKVMGLQDSAFWLSWGLIYVGFIFIFSVFIAVIITSTRIIVMTGFLVIFTLFFLYGLSVIAVTF
LMAVLLQKAIITNLFVFLFNLFWGCVGFTVLHKELPSSLEWVLSICSPFAFTSGMTKIIFLEYN
LNGVVFPDPSGESYVMIAVFFILAFDGLLYLVLALYFDKILPCGADRRAAPLFFLNPVSCFRKR
TSRNKVTERDIDPELPSDEYFEPVDPEYQGKEAIRIRNIRKEYKGKSGKVEALKGLFFDVYESQ
ITAVLGHGGAGKSSLLNILNGLSVPTSGLATVYNKNLSEMQDLKEIRKMIGVCPQHNVQFDALT
VKENLTLFANIKGIVPQSVAQEVQQILSELDMQTIQDELAEHLSEGQKRKLTFGVAILGDPRIL
LLDEPTAGLDPFSRQRVWGFLKERRADRVILFSTQFTDEADILADRKVILSNGALKCTGSSVFL
KRKWGLGYHLSLFMNETCDSEQLTSFINHHIPGAKLKAKTKEKLVYTLPLEKTSKFPEFFSDLD
KYSGQGLMNYEVSMSTLNEVFMNLEGEPSTTQDFEKGETLTDSDSLNEMEVAPPSLSKAQKTMS
AMSLWRMQVCAIARLRVLKLRRERKAFLTFLPLLGISLIPLITEYMANALIEVKTNWEFKTDLY
FLSPGQLPQGLRTSLLVINNTESNIEDFVQSLKHQNIVLEVDDFENRNATESLSYNGAIIVSGR
QKDYRFSAVCNTKRLHCFPILMNVISNGILRMLNHTQHIRLEEDVLSSGIVVVWFGILEASLSI
LFIVCSVSPHIAMSSISDFKKKADSQLWISGLYPSAYWCGQALVDITLLSGILLTGYITLYTTK
LMHIYLTGEIVLSIVLLAFGCAASLVFLTYVISFVFGKKRKNSGLWSICFFIVITIMFDTVLMD
PFNEALLISAMMLVPSFSLNALLIVLEMRAYQYYREFGESKYGLSGVDLLLCLIPYFHTLLFIF
VLRCLELKYGKNVVRKDPLFRIAPQSLHVQPNPEEPVDEDEDVQAERMRTSDALSTVNLDEKPA
IIASCLHKEYTGQKKWCCSKRRKKIAVRNISFCVNKGEILGLLGPEGAGKSSSLRMIAGIMKPT
AGEVELKELSSAVAHQGEGHGAAKLGYCPQENVLWPILTVKEHLEVYAAVKGLRKKDAVIAISR
LVNAFKLHDQLNVQARNLVVGLTRKLCFALSILGNSPVLILDEPSTGLDVSGKQQMWQAIQAAV
KDNKKGVLLSTHDLAEAEALCDRAAIMVSGRLRLIGSIQHLKRRFGKDYILELRVKEISQEPLV
HKEILRLFPQAARQDRCFSLLTYKLPVTDVHPLSQAFHKLEAVKRGFNLDDYSLSQCTLDRVFL
ELSKEQELGDVHEEADITMRWKLLPPSDEL

hide sequence

RefSeq Acc Id:	XP_006247718 ⟸ XM_006247656
- Peptide Label:	isoform X2
- UniProtKB:	M0R890 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSMKELSVRQQTRVLLHKNLLKKWRMKRESLLEWSIPVVIGLYMGLFSYFKENNQVPEVPPQD LGSIDEFNGSSIMVVYTPISNVTQQIMNKTITAPTMKGTRIVGVPSEKDLDEMLLDHVPRAFGI VFNDTFFYKLKVYLMYGNPFLKEDLLAHCWDTYPHVFCSLTRYWKRGFVALQTAINAAIIEVTT KHPVMEELMSVNAFNMKTLPFISKDIFQYEIFILFCLLYFSSFIYFASRSVTKERKHSKEFMKV MGLQDSAFWLSWGLIYVGFIFIFSVFIAVIITSTRIIVMTGFLVIFTLFFLYGLSVIAVTFLMA VLLQKAIITNLFVFLFNLFWGCVGFTVLHKELPSSLEWVLSICSPFAFTSGMTKIIFLEYNLNG VVFPDPSGESYVMIAVFFILAFDGLLYLVLALYFDKILPCGADRRAAPLFFLNPVSCFRKRTSR NKVTERDIDPELPSDEYFEPVDPEYQGKEAIRIRNIRKEYKGKSGKVEALKGLFFDVYESQITA VLGHGGAGKSSLLNILNGLSVPTSGLATVYNKNLSEMQDLKEIRKMIGVCPQHNVQFDALTVKE NLTLFANIKGIVPQSVAQEVQQILSELDMQTIQDELAEHLSEGQKRKLTFGVAILGDPRILLLD EPTAGLDPFSRQRVWGFLKERRADRVILFSTQFTDEADILADRKVILSNGALKCTGSSVFLKRK WGLGYHLSLFMNETCDSEQLTSFINHHIPGAKLKAKTKEKLVYTLPLEKTSKFPEFFSDLDKYS GQGLMNYEVSMSTLNEVFMNLEGEPSTTQDFEKGETLTDSDSLNEMEVAPPSLSKAQKTMSAMS LWRMQVCAIARLRVLKLRRERKAFLTFLPLLGISLIPLITEYMANALIEVKTNWEFKTDLYFLS PGQLPQGLRTSLLVINNTESNIEDFVQSLKHQNIVLEVDDFENRNATESLSYNGAIIVSGRQKD YRFSAVCNTKRLHCFPILMNVISNGILRMLNHTQHIRLEEDVLSSGIVVVWFGILEASLSILFI VCSVSPHIAMSSISDFKKKADSQLWISGLYPSAYWCGQALVDITLLSGILLTGYITLYTTKLMH IYLTGEIVLSIVLLAFGCAASLVFLTYVISFVFGKKRKNSGLWSICFFIVITIMFDTVLMDPFN EALLISAMMLVPSFSLNALLIVLEMRAYQYYREFGESKYGLSGVDLLLCLIPYFHTLLFIFVLR CLELKYGKNVVRKDPLFRIAPQSLHVQPNPEEPVDEDEDVQAERMRTSDALSTVNLDEKPAIIA SCLHKEYTGQKKWCCSKRRKKIAVRNISFCVNKGEILGLLGPEGAGKSSSLRMIAGIMKPTAGE VELKELSSAVAHQGEGHGAAKLGYCPQENVLWPILTVKEHLEVYAAVKGLRKKDAVIAISRLVN AFKLHDQLNVQARNLVVGLTRKLCFALSILGNSPVLILDEPSTGLDVSGKQQMWQAIQAAVKDN KKGVLLSTHDLAEAEALCDRAAIMVSGRLRLIGSIQHLKRRFGKDYILELRVKEISQEPLVHKE ILRLFPQAARQDRCFSLLTYKLPVTDVHPLSQAFHKLEAVKRGFNLDDYSLSQCTLDRVFLELS KEQELGDVHEEADITMRWKLLPPSDEL hide sequence

RefSeq Acc Id:

XP_006247717 ⟸ XM_006247655

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGSMKELSVRQQTRVLLHKNLLKKWRMKRESLLEWSIPVVIGLYMGLFSYFKENNQVPEVPPQD
LGSIDEFNGSSIMVVYTPISNVTQQIMNKTITAPTMKGTRIVGVPSEKDLDEMLLDHVPRAFGI
VFNDTFFYKLKVYLMYGNPFLKEDLLAHCWDTYPHVFCSLTRYWKRGFVALQTAINAAIIEVTT
KHPVMEELMSVNAFNMKTLPFISKDIFQYEIFILFCLLYFSSFIYFASRSVTKERKHSKEFMKV
MGLQDSAFWLSWGLIYVGFIFIFSVFIAVIITSTRIIVMTGFLVIFTLFFLYGLSVIAVTFLMA
VLLQKAIITNLFVFLFNLFWGCVGFTVLHKELPSSLEWVLSICSPFAFTSGMTKIIFLEYNLNG
VVFPDPSGESYVMIAVFFILAFDGLLYLVLALYFDKILPCGADRRAAPLFFLNPVSCFRKRTSR
NKVTERDIDPELPSDEYFEPVDPEYQGKEAIRIRNIRKEYKGKSGKVEALKGLFFDVYESQITA
VLGHGGAGKSSLLNILNGLSVPTSGLATVYNKNLSEMQDLKEIRKMIGVCPQHNVQFDALTVKE
NLTLFANIKGIVPQSVAQEVQQILSELDMQTIQDELAEHLSEGQKRKLTFGVAILGDPRILLLD
EPTAGLDPFSRQRVWGFLKERRADRVILFSTQFTDEADILADRKVILSNGALKCTGSSVFLKRK
WGLGYHLSLFMNETCDSEQLTSFINHHIPGAKLKAKTKEKLVYTLPLEKTSKFPEFFSDLDKYS
GQGLMNYEVSMSTLNEVFMNLEGEPSTTQDFEKGETLTDSDSLNEMEVAPPSLSKAQKTMSAMS
LWRMQVCAIARLRVLKLRRERKAFLTFLPLLGISLIPLITEYMANALIEVKTNWEFKTDLYFLS
PGQLPQGLRTSLLVINNTESNIEDFVQSLKHQNIVLEVDDFENRNATESLSYNGAIIVSGRQKD
YRFSAVCNTKRLHCFPILMNVISNGILRMLNHTQHIRLEEDVLSSGIVVVWFGILEASLSILFI
VCSVSPHIAMSSISDFKKKADSQLWISGLYPSAYWCGQALVDITLLSGILLTGYITLYTTKLMH
IYLTGEIVLSIVLLAFGCAASLVFLTYVISFVFGKKRKNSGLWSICFFIVITIMFDTVLMDPFN
EALLISAMMLVPSFSLNALLIVLEMRAYQYYREFGESKYGLSGVDLLLCLIPYFHTLLFIFVLR
CLELKYGKNVVRKDPLFRIAPQSLHVQPNPEEPVDEDEDVQAERMRTSDALSTVNLDEKPAIIA
SCLHKEYTGQKKWCCSKRRKKIAVRNISFCVNKGEILGLLGPEGAGKSSSLRMIAGIMKPTAGE
VELKELSSAVAHQGEGHGAAKLGYCPQENVLWPILTVKEHLEVYAAVKGLRKKDAVIAISRLVN
AFKLHDQLNVQARNLVVGLTRKLCFALSILGNSPVLILDEPSTGLDVSGKQQMWQAIQAAVKDN
KKGVLLSTHDLAEAEALCDRAAIMVSGRLRLIGSIQHLKRRFGKDYILELRVKEISQEPLVHKE
ILRLFPQAARQDRCFSLLTYKLPVTDVHPLSQAFHKLEAVKRGFNLDDYSLSQCTLDRVFLELS
KEQELGDVHEEADITMRWKLLPPSDEL

hide sequence

Ensembl Acc Id:

ENSRNOP00000065682 ⟸ ENSRNOT00000073149

RefSeq Acc Id:	XP_038943375 ⟸ XM_039087447
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063126115 ⟸ XM_063270045
- Peptide Label:	isoform X2

Protein Domains

ABC transporter

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R890-F1-model_v2	AlphaFold	M0R890	1-1627	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308998	AgrOrtholog
BioCyc Gene	G2FUF-22818	BioCyc
Ensembl Genes	ENSRNOG00000046890	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000073149	ENTREZGENE
	ENSRNOT00000073149.4	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	AAA+_ATPase	UniProtKB/TrEMBL
	ABC2_TM	UniProtKB/TrEMBL
	ABC_A	UniProtKB/TrEMBL
	ABC_transporter-like	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	R2_ABCA1-4-like	UniProtKB/TrEMBL
KEGG Report	rno:303639	UniProtKB/TrEMBL
NCBI Gene	303639	ENTREZGENE
PANTHER	PTHR19229	UniProtKB/TrEMBL
	PTHR19229:SF13	UniProtKB/TrEMBL
Pfam	ABC2_membrane_3	UniProtKB/TrEMBL
	ABC_tran	UniProtKB/TrEMBL
	R1_ABCA1	UniProtKB/TrEMBL
PhenoGen	Abca6	PhenoGen
PROSITE	ABC_TRANSPORTER_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000046890	RatGTEx
SMART	AAA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	M0R890	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-12-09	Abca6	ATP binding cassette subfamily A member 6	Abca6	ATP-binding cassette, subfamily A (ABC1), member 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-11-16	Abca6	ATP-binding cassette, subfamily A (ABC1), member 6	Abca6	ATP-binding cassette, sub-family A (ABC1), member 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Abca6	ATP-binding cassette, sub-family A (ABC1), member 6	Abca6_predicted	ATP-binding cassette, sub-family A (ABC1), member 6 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Abca6_predicted	ATP-binding cassette, sub-family A (ABC1), member 6 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD