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Gene: Lhx1 (LIM homeobox 1) Rattus norvegicus
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Symbol: Lhx1
Name: LIM homeobox 1
Description: Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and cis-regulatory region sequence-specific DNA binding activity. Involved in cellular response to fibroblast growth factor stimulus and kidney development. Localizes to nucleus. Orthologous to human LHX1 (LIM homeobox 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: homeobox protein Lim-1; LIM homeobox protein 1; LIM/homeobox protein Lhx1; rlim
Orthologs:
Homo sapiens (human) : LHX1 (LIM homeobox 1)  HGNC  Alliance
Mus musculus (house mouse) : Lhx1 (LIM homeobox protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lhx1 (LIM homeobox 1)
Pan paniscus (bonobo/pygmy chimpanzee) : LHX1 (LIM homeobox 1)
Canis lupus familiaris (dog) : LHX1 (LIM homeobox 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lhx1 (LIM homeobox 1)
Sus scrofa (pig) : LHX1 (LIM homeobox 1)
Chlorocebus sabaeus (African green monkey) : LHX1 (LIM homeobox 1)
Heterocephalus glaber (naked mole-rat) : Lhx1 (LIM homeobox 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01071,843,991 - 71,849,293 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1071,843,991 - 71,849,293 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01071,752,917 - 71,758,219 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41072,800,497 - 72,805,799 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11072,814,866 - 72,820,169 (-)NCBI
Celera1068,324,814 - 68,330,116 (-)NCBICelera
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Lhx1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 71074
Created: 2002-07-09
Species: Rattus norvegicus
Last Modified: 2020-07-28
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.