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Gene: Msi2 (musashi RNA-binding protein 2) Rattus norvegicus

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Symbol:

Msi2

Name:

musashi RNA-binding protein 2

RGD ID:

1560397

Description:

Predicted to enable identical protein binding activity; mRNA binding activity; and poly(U) RNA binding activity. Predicted to be involved in central nervous system development; regulation of translation; and stem cell development. Predicted to be active in cytoplasm. Orthologous to human MSI2 (musashi RNA binding protein 2); PARTICIPATES IN mRNA decay pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC360596; Musashi homolog 2; Musashi homolog 2 (Drosophila); RGD1560397; RNA-binding protein Musashi homolog 2; similar to RNA-binding protein Musashi2-S

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MSI2 (musashi RNA binding protein 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB
Mus musculus (house mouse):	Msi2 (musashi RNA-binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Msi2 (musashi RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MSI2 (musashi RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MSI2 (musashi RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Msi2 (musashi RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MSI2 (musashi RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MSI2 (musashi RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Msi2 (musashi RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Msi2 (musashi RNA binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MSI2 (musashi RNA binding protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Msi2 (musashi RNA-binding protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	msi2a (musashi RNA-binding protein 2a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	msi2a (musashi RNA-binding protein 2a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	msi2b (musashi RNA-binding protein 2b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	msi2b (musashi RNA-binding protein 2b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HRP1	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rbp6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Rbp6	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	msi	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	msi-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	msi-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	msi2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	msi2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	73,640,960 - 74,007,497 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	73,646,139 - 74,007,552 (-)	Ensembl				GRCr8
mRatBN7.2	10	73,143,760 - 73,510,566 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	73,147,380 - 73,510,157 (-)	Ensembl				mRatBN7.2
Rnor_6.0	10	75,673,840 - 76,040,106 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	75,681,393 - 76,039,964 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	74,071,835 - 74,435,491 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	76,776,415 - 77,149,277 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	72,051,638 - 72,417,027 (-)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP,ISO)

1,4-dichlorobenzene (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antimycin A (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

cisplatin (EXP)

cobalt dichloride (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

deguelin (ISO)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenpyroximate (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

genistein (ISO)

glycidyl methacrylate (ISO)

hydrogen cyanide (ISO)

hydrogen peroxide (ISO)

lead diacetate (ISO)

lead(0) (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

milrinone (EXP)

N,N-diethyl-m-toluamide (EXP)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (ISO)

permethrin (EXP)

phenylmercury acetate (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

potassium cyanide (ISO)

pyrimidifen (ISO)

rotenone (EXP)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

sunitinib (ISO)

tebufenpyrad (ISO)

testosterone (ISO)

thifluzamide (ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

triadimefon (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

central nervous system development (IBA)

regulation of translation (IBA)

stem cell development (IEA,ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO)

cytosol (IEA,ISO)

Molecular Function

identical protein binding (IEA,ISO)

mRNA binding (IBA)

nucleic acid binding (IEA)

poly(U) RNA binding (IEA,ISO)

protein binding (ISO)

RNA binding (IEA)

single-stranded RNA binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mRNA decay pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11588182	PMID:12407178	PMID:22658674	PMID:22681889	PMID:30367664

Genomics

Comparative Map Data

Msi2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	73,640,960 - 74,007,497 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	73,646,139 - 74,007,552 (-)	Ensembl				GRCr8
mRatBN7.2	10	73,143,760 - 73,510,566 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	73,147,380 - 73,510,157 (-)	Ensembl				mRatBN7.2
Rnor_6.0	10	75,673,840 - 76,040,106 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	75,681,393 - 76,039,964 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	74,071,835 - 74,435,491 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	76,776,415 - 77,149,277 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	72,051,638 - 72,417,027 (-)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

MSI2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	57,255,851 - 57,701,581 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	57,255,851 - 57,684,689 (+)	Ensembl			hg38	GRCh38
GRCh37	17	55,333,212 - 55,762,050 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	52,688,930 - 53,112,298 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	52,689,372 - 53,065,542	NCBI
Celera	17	51,795,383 - 52,219,094 (+)	NCBI		Celera
Cytogenetic Map	17	q22	NCBI
HuRef	17	50,694,663 - 51,117,860 (+)	NCBI		HuRef
CHM1_1	17	55,398,967 - 55,822,559 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	58,130,926 - 58,574,836 (+)	NCBI		T2T-CHM13v2.0

Msi2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	88,230,208 - 88,609,197 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	88,230,208 - 88,609,339 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	88,339,382 - 88,718,306 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	88,339,382 - 88,718,513 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	88,152,884 - 88,403,661 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	88,155,655 - 88,406,342 (-)	NCBI		MGSCv36	mm8
Celera	11	97,951,761 - 98,327,496 (-)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	52.4	NCBI

Msi2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	5,278,568 - 5,638,075 (-)	Ensembl
ChiLan1.0	NW_004955451	5,271,008 - 5,697,839 (-)	NCBI	ChiLan1.0	ChiLan1.0

MSI2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	73,431,449 - 73,859,482 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	78,242,455 - 78,670,376 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	51,335,550 - 51,763,572 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	56,194,337 - 56,621,330 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	56,194,360 - 56,613,698 (+)	Ensembl			panPan2	panpan1.1

MSI2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	32,017,951 - 32,409,457 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	31,257,115 - 31,645,725 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	32,825,471 - 33,214,836 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	32,825,157 - 33,214,400 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	31,611,023 - 31,999,606 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	31,894,294 - 32,282,733 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	31,977,953 - 32,366,683 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Msi2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	31,370,729 - 31,737,475 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	5,342,512 - 5,704,709 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	5,337,571 - 5,704,331 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MSI2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	33,537,196 - 33,975,548 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	33,537,163 - 33,974,845 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	34,609,449 - 34,637,812 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MSI2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	35,711,443 - 36,141,949 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	35,719,075 - 36,141,925 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	6,529,836 - 6,961,096 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Msi2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	12,230,802 - 12,596,419 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624795	12,230,756 - 12,603,360 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Msi2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	82,094,498 - 82,459,708 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Msi2
3145 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	210
Count of miRNA genes:	151
Interacting mature miRNAs:	181
Transcripts:	ENSRNOT00000003164, ENSRNOT00000034921, ENSRNOT00000071623
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
631565	Hcuc4	Hepatic copper content QTL 4	4.15		liver copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	10	67439473	73950209	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
152025224	Bw193	Body weight QTL 193	6.47		body mass (VT:0001259)		10	52162433	75582749	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	56868440	76129113	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50464802	95464802	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
2289982	Bp303	Blood pressure QTL 303			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	73950209	76129113	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67241334	98502431	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61843496	98710773	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	73695339	97272278	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
724555	Bp150	Blood pressure QTL 150		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	73950209	78707585	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	67476608	73695498	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	73049656	94495280	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	49495492	94495492	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	67476608	73695498	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	73695339	83061459	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	73695339	83061459	Rat
2298481	Eau9	Experimental allergic uveoretinitis QTL 9		0.0169	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	64139597	83061459	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61843633	83061236	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	55307972	93608131	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61843496	100198886	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49943710	94943710	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61843496	100198886	Rat
12880053	Cm104	Cardiac mass QTL 104		0.009	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	73950209	83959619	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50604677	95604677	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Rat27

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	73,950,209 - 73,950,353 (+)	Marker Load Pipeline
mRatBN7.2	10	73,452,992 - 73,453,136 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,983,662 - 75,983,805	NCBI	Rnor6.0
Rnor_5.0	10	74,127,825 - 74,127,968	UniSTS	Rnor5.0
RGSC_v3.4	10	77,091,834 - 77,092,169	RGD	RGSC3.4
RGSC_v3.4	10	77,091,892 - 77,092,035	UniSTS	RGSC3.4
Celera	10	72,360,629 - 72,360,772	UniSTS
RGSC_v3.1	10	77,106,262 - 77,106,405	RGD
RH 3.4 Map	10	681.99	RGD
RH 3.4 Map	10	681.99	UniSTS
RH 2.0 Map	10	766.2	RGD
SHRSP x BN Map	10	50.9999	RGD
FHH x ACI Map	10	59.2399	RGD
Cytogenetic Map	10	q26	UniSTS

D10Rat26

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,695,339 - 73,695,498 (+)	Marker Load Pipeline
Celera	10	72,105,962 - 72,106,120	UniSTS
RH 2.0 Map	10	755.6	RGD
SHRSP x BN Map	10	51.03	RGD
FHH x ACI Map	10	59.1999	RGD
Cytogenetic Map	10	q26	UniSTS

D10Rat193

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	74,076,752 - 74,076,978 (+)	Marker Load Pipeline
mRatBN7.2	10	73,579,541 - 73,579,767 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	76,109,491 - 76,109,716	NCBI	Rnor6.0
Rnor_5.0	10	74,001,821 - 74,002,046	UniSTS	Rnor5.0
RGSC_v3.4	10	77,219,627 - 77,219,852	UniSTS	RGSC3.4
RGSC_v3.4	10	77,219,626 - 77,219,852	RGD	RGSC3.4
Celera	10	72,485,954 - 72,486,143	UniSTS
RGSC_v3.1	10	77,233,996 - 77,234,222	RGD
FHH x ACI Map	10	59.2399	RGD
FHH x ACI Map	10	59.2399	UniSTS
Cytogenetic Map	10	q26	UniSTS

D10Got98

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,315,393 - 73,315,578 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,846,098 - 75,846,282	NCBI	Rnor6.0
Rnor_5.0	10	74,265,259 - 74,265,443	UniSTS	Rnor5.0
RGSC_v3.4	10	76,953,463 - 76,953,647	RGD	RGSC3.4
RGSC_v3.4	10	76,953,463 - 76,953,647	UniSTS	RGSC3.4
Celera	10	72,223,061 - 72,223,245	UniSTS
RGSC_v3.1	10	76,967,833 - 76,968,017	RGD
Cytogenetic Map	10	q26	UniSTS

D10Chm78

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	73,654,788 - 73,655,025 (+)	Marker Load Pipeline
mRatBN7.2	10	73,157,588 - 73,157,825 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,687,669 - 75,687,905	NCBI	Rnor6.0
Rnor_5.0	10	74,421,425 - 74,421,662	NCBI	Rnor5.0
RGSC_v3.4	10	76,785,232 - 76,785,468	UniSTS	RGSC3.4
Celera	10	72,065,467 - 72,065,703	UniSTS
Cytogenetic Map	10	q26	UniSTS

D10Chm210

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,214,430 - 73,214,632 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,743,537 - 75,743,738	NCBI	Rnor6.0
Rnor_5.0	10	74,366,267 - 74,366,468	UniSTS	Rnor5.0
RGSC_v3.4	10	76,850,356 - 76,850,557	UniSTS	RGSC3.4
Celera	10	72,122,298 - 72,122,499	UniSTS
Cytogenetic Map	10	q26	UniSTS

BE113957

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,144,567 - 73,144,718 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,674,648 - 75,674,798	NCBI	Rnor6.0
Rnor_5.0	10	74,434,533 - 74,434,683	UniSTS	Rnor5.0
RGSC_v3.4	10	76,772,207 - 76,772,357	UniSTS	RGSC3.4
Celera	10	72,052,446 - 72,052,596	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH140144

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,144,839 - 73,145,056 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,674,920 - 75,675,136	NCBI	Rnor6.0
Rnor_5.0	10	74,434,195 - 74,434,411	UniSTS	Rnor5.0
RGSC_v3.4	10	76,772,479 - 76,772,695	UniSTS	RGSC3.4
Celera	10	72,052,718 - 72,052,934	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH141905

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,621,080 - 73,621,293 (+)	MAPPER	mRatBN7.2
mRatBN7.2	16	17,844,021 - 17,844,237 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	19,568,001 - 19,568,216	NCBI	Rnor6.0
Rnor_6.0	10	76,151,073 - 76,151,285	NCBI	Rnor6.0
Rnor_5.0	16	19,425,028 - 19,425,243	UniSTS	Rnor5.0
Rnor_5.0	10	73,960,252 - 73,960,464	UniSTS	Rnor5.0
RGSC_v3.4	10	77,261,760 - 77,261,972	UniSTS	RGSC3.4
RGSC_v3.4	16	18,331,190 - 18,331,405	UniSTS	RGSC3.4
Celera	16	18,052,386 - 18,052,601	UniSTS
Celera	10	72,527,589 - 72,527,801	UniSTS
RH 3.4 Map	10	681.4	UniSTS
Cytogenetic Map	10	q26	UniSTS

AI171993

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,570,526 - 73,570,641 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	76,100,472 - 76,100,586	NCBI	Rnor6.0
Rnor_5.0	10	74,011,259 - 74,011,373	UniSTS	Rnor5.0
RGSC_v3.4	10	77,210,148 - 77,210,262	UniSTS	RGSC3.4
Celera	10	72,477,465 - 72,477,579	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH133539

Rat Assembly	Chr	Position (strand)	Source
Celera	10	72,177,756 - 72,177,974	UniSTS
RH 3.4 Map	10	681.8	UniSTS
Cytogenetic Map	10	q26	UniSTS

BE108995

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,471,886 - 73,472,050 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	76,002,532 - 76,002,695	NCBI	Rnor6.0
Rnor_5.0	10	74,108,914 - 74,109,077	UniSTS	Rnor5.0
RGSC_v3.4	10	77,110,757 - 77,110,920	UniSTS	RGSC3.4
Celera	10	72,379,433 - 72,379,596	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH138628

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,165,381 - 73,165,584 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,695,462 - 75,695,664	NCBI	Rnor6.0
Rnor_5.0	10	74,413,667 - 74,413,869	UniSTS	Rnor5.0
RGSC_v3.4	10	76,793,025 - 76,793,227	UniSTS	RGSC3.4
Celera	10	72,073,260 - 72,073,462	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH139220

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,144,608 - 73,144,767 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,674,689 - 75,674,847	NCBI	Rnor6.0
Rnor_5.0	10	74,434,484 - 74,434,642	UniSTS	Rnor5.0
RGSC_v3.4	10	76,772,248 - 76,772,406	UniSTS	RGSC3.4
Celera	10	72,052,487 - 72,052,645	UniSTS
Cytogenetic Map	10	q26	UniSTS

RH140976

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,537,045 - 73,537,262 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	76,067,185 - 76,067,401	NCBI	Rnor6.0
Rnor_5.0	10	74,044,351 - 74,044,567	UniSTS	Rnor5.0
RGSC_v3.4	10	77,175,971 - 77,176,187	UniSTS	RGSC3.4
Celera	10	72,444,068 - 72,444,284	UniSTS
Cytogenetic Map	10	q26	UniSTS

AA800020

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,147,518 - 73,147,676 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,677,599 - 75,677,756	NCBI	Rnor6.0
Rnor_5.0	10	74,431,575 - 74,431,732	UniSTS	Rnor5.0
RGSC_v3.4	10	76,775,162 - 76,775,319	UniSTS	RGSC3.4
Celera	10	72,055,397 - 72,055,554	UniSTS
Cytogenetic Map	10	q26	UniSTS

UniSTS:236694

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	73,144,299 - 73,144,693 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	75,674,380 - 75,674,773	NCBI	Rnor6.0
Rnor_5.0	10	74,434,558 - 74,434,951	UniSTS	Rnor5.0
RGSC_v3.4	10	76,771,939 - 76,772,332	UniSTS	RGSC3.4
Celera	10	72,052,178 - 72,052,571	UniSTS
Cytogenetic Map	10	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001430232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039087676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003164 ⟹ ENSRNOP00000003164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	73,649,521 - 74,005,835 (-)	Ensembl
mRatBN7.2 Ensembl	10	73,152,321 - 73,508,666 (-)	Ensembl
Rnor_6.0 Ensembl	10	75,681,393 - 76,039,964 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099554 ⟹ ENSRNOP00000096507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	73,646,139 - 74,007,473 (-)	Ensembl
mRatBN7.2 Ensembl	10	73,147,380 - 73,510,157 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106986 ⟹ ENSRNOP00000090730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	73,648,512 - 74,007,473 (-)	Ensembl
mRatBN7.2 Ensembl	10	73,148,769 - 73,322,890 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109508 ⟹ ENSRNOP00000094550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	73,977,825 - 74,007,552 (-)	Ensembl
mRatBN7.2 Ensembl	10	73,480,608 - 73,510,157 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112171 ⟹ ENSRNOP00000087497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	73,648,512 - 74,007,514 (-)	Ensembl
mRatBN7.2 Ensembl	10	73,147,380 - 73,510,157 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000153490 ⟹ ENSRNOP00000107092

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	73,650,266 - 74,007,514 (-)	Ensembl

RefSeq Acc Id:

XM_017597690 ⟹ XP_017453179

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,648,508 - 73,998,416 (-)	NCBI
mRatBN7.2	10	73,143,760 - 73,484,415 (-)	NCBI
Rnor_6.0	10	75,673,840 - 76,012,325 (-)	NCBI

Sequence:

show sequence

CTCCCCCTCCCCTCCGCTCTTCCCTCTCCCCCTCTGGCAGATCTCTTTAGCCCCCAGTGTCTGG
GGAATTGAGGGCTAGTTTTACTGAGTCCCAGCCTCTCCTGAGTCACTCTCCTTTTCTTGGGTCC
TGTCGCTGAGTGGTACGTGCTGGGCCACTGGCTCCAGATGGTGCTTAGACCGCTAACTGTCATC
TGGGGATGGATCTGTGCAAGATGGCATTGAGGGCGGGTGATTCCTGCTTCTTTGGGTAGAAAAT
GGGAAGTGGTGATAGAAGGAACAGGGAGGCTGTGGGGCGATTATAGTGTTCATGCTAATTACCT
GCAGTGCCCTAGCCTAGGATTTCACAGCCTTGGCACTGTTGACATTTGGGGCCAGGTAAACCTA
TAGTGTGGTATAGAAAGGAAGAGATAGGGGGCAGGGGTTCTGTTGGGAAGCACAGTGTCCCTGG
TTTCTGCCCTGAGACTCCAGTGTACCCTACCCTCTCCCTCTCAGCGGCTCCCAGTGACTCCCAG
GGGGACATGCCCTTCTGGTTGAGAACCATTGATCTGGCCCCTTAAAGTGGCTTCTGTTTGAGAA
GGGGATCCTTGAACGGGTTCTGAGGTTCCGTTCCGCATAGATTAGAGCCTGCTTGTAGAGTTCA
AGAGCAGGAGGCTGCCTGGAAACGCACATGGACCACGGTCCAAGCTTGGGCCGCTTCAGGTGAC
CAGATGGTCACAAGAACAAAGAAGATATTTGTAGGAGGGTTGTCTGCGAACACAGTAGTGGAAG
ATGTCAAGCAATATTTCGAGCAGTTTGGCAAGGTAGAGGATGCGATGCTGATGTTCGACAAAAC
CACCAACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGACGTTGTGGAGAAAGTC
TGTGAGATTCATTTCCATGAAATCAATAATAAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAG
AAGTCATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGGCTGCCATACACCATGGACGCGTT
CATGCTTGGCATGGGGATGTTGGGCTACCCCAACTTTGTGGCAACCTATGGCAGAGGCTATCCT
GGATTTGCTCCTAGCTATGGCTACCAGTTCCCAGCCCTATTACCATATTTAAATGCAAGCTTCC
CAGCAGCGGCTTATGGACCAGTGGCGGCGGCAGCTGTGGCAGCGGCTCGAGGATCAGTCCTGAA
TAGCTACAGTGCTCAACCGAATTTTGGCGCGCCCACTTCCCCGGCAGGCTCCAACCCGGCGCGG
CCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGATCTCTACGGCCCTGCCAGCC
AGGACTCCGGAGTGGGGAATTACATAAGTGCAGCCAGCCCACAGCCGGGCTCAGGCTTCGGCCA
CGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATACCACTGAGCAGGTGCTTCT
ATTACCATCTCACTATGAGAGCATACCTGGATGTCCAGGCAAGACTGGGCGAAGTTTCTGAGTG
GCCCTTTGTTTAGGTGACGTCCTCAGACCTGGATCCCCCACCAGCCTCACTCCTCATCCCAACC
AGAGGTGGCACACTTGGATTAAGGGTTGACACATCTCATCTCACCCATCTACTATCTGCTGTAA
TATAAGACAACAGCTTTTAAACGTGTATATAACCCATGATTTTGGTTTGGTTCTGTTTGTTTTC
CTTGGTGGTTCCCCTCCCCCTCTCCCTTCTCCTTTTAAATCTCCCTCGATCACATTTGGTAGTG
ATTTTTGACTTAGTCTGGTAGTCACCTAGCTTAATATCTAGTTAAAAGCTAACCATAGTATACT
TGTTATATATTAAGGAGTTTTTTCTTTCTTTTTTTTTTCTTTTTTCCTTTAAGAGAATTTTTGT
TTTGTTTTTGATTCTGTTCTCACTTTTAAAGGATGCTGAGATGGTGATGTTACTCTCCATTTTT
GGTACCGATTTTGAGACTGTAAGACTTTTCACCCGGGACTTTAGCACTGAATCGAAATTGTGAT
ACGCGGAGCGGGGGGTGGGCATAGACTCTATTTTGTGTTGTAGAAGTGACATACAGTTGGCTGC
TCAACAGACTCTCTAGCAGTTCATTTTGTGACGTCTCTTTGTTAACCTAAGTATATCTATTTTC
GGCAATAAGGTAAGGACGGCCATGTTTTGAGGGTCCTCCTTTTCTATGAGTGCTTTCTCTTTTT
TTCTGTTCAAAGAGGTCATATTATAAGGTTTTTTGAAATTGTGAATTCTAAAAAACAAAAAACA
AACAAAAAAATGTTGTAAATATGATTCCATTAACTACATAGAAACTATTAAGGAAGAGAGAATC
AAAAATATTTTTGTGAGGGAGTTGCTCCCAGGCAGTTAGGTACCCTGGAAGGAGGGGAGGGAAC
CTTGATGAAGCCGGTACCACAACACAAGAGGACCCAGCTGCCAGGGCAGCCCGGAACCCCACTC
TCCGCTGTTGGTGTGGTAGACCTAAGAGCTGTGTTAGCACCCCGCCAGCCTACCAGCCTCTCTG
TGCCCAGCTTCAAATGGTATGGTCTAGCTAGATTTTTATTTAAAATATGAAAAACTGCTTTTCC
CAAGATGTTTTTTAAAAGGAAAACAAAAGCTACAATTTTAATATTTGACATATTTCGAGTTTCA
AAGCACACCTGTTTTGGCTTAGGGGAGGGGCAGGGTGGGGACATTCTTTTTCAGTCTTAATTTT
TAAATATCTGATCATTTTATATTGTCCGATCATTTCAGCACCTCCAAAGGGTCCTAGGATAACC
CTGCCTCTCCCTTCACCCTGCTCCCCATCTTCCCCCCAGAGAGGGGGCCTGTGGGCCAGGTGTG
GACAAGCCTGCATGAATACACCCTTTCTCCATTCATTTTCTATTTACAAATTAGGAAAGCAACC
TTTCAGTTTATATATATTTTTTTTTCCTTTTTGATACCTCAGTGCTGCAAGTATCATCAGAGAG
GCTATGGAAGAGTTTTGTGTTTTTTTTTAATTTATTGTAGATGTAAACAGAATTTTAAAAAAAT
AAAATATAAGCATCTCTGCACTGTGACTGGTGGGAAAAACTGACAGCTTCCTGTTTGCACAAGT
TTGACATTTGGCTGTTATAATATATGGTCCTCAGTTGGGGAAAGACACTTAGGATGAAGGATGT
TTTTTAATTTAACTTTTTTTTTTTAAAGAAAAAATATCAGTAATAAGTTGGCAACAGCAACCGT
AGGAAGGTAGCATTAAAGCATACTGTAGTGTGGATATATATTTTTTCTTTTTTAAAATGTGATA
TTGACATTTTATTAATATTTTTTAAATTGTTACGTTTATAAATTTGGTACTTAAGGCACAGCCA
GTATGAGACACTGAATGCGACATTTATTACAATGAGCTGCTGCACTCCTATTTTTATAAACTTT
ACTGACAAGTAGACTAATGTAGACATTCACAGACACGATAGCACAGAAGCATCTTCAAACGAAA
AGTCTTCGGAAAGCTGATTCAGAAAGGACGGGAAGAAGCCTGCTCCCGTTCTGGTTAAATGCAA
CTTTATTTCATTTAATTATTTTATTTTTTAAGAAACAAAATCATGTTCTTTTTTTTTTTTTTTC
TAAATAAAATTGCTGGGTTGTTTGGTAAGGTTTTGGGTGGTTTTTGTTTTGTTTTGTTTTAAGT
TTCCAAACAACCAAACTAAGAAAAATGCTGGATGCTTTTAAAATACAATACTTACTCAAGTCAT
AAAATAACAACATAGAACTTTTATTTTTAAGAAACAACAACAAAGAGAAAGAGAGACTAGATTC
CCAGCAATTCAGTGTCGAACAAGGGGATTAATTAATTACTCTTTTGTCCATGTTGATGATGTCC
TGTCCCCAGCCCCCGCCCATCTTCCCACAGCCCCATTCACCTCATAGAGTGCTCTTTGTTGACC
ATTGTCTGTTAATAATGTATAAAATGGCTATCTTGTAAGTGTGCTGTCTTGGTACTAGCGTAGT
GACTTTTTTTCTCTTCTTCTAGTACATATTGATAGGTATAACGTAATTAAGGTTTTTAAAAAAA
AATAGACATAGTTATTCAGATTTAGGACCAGTAAGGATAGAACTTTCTCTTATTTATGAAAAGA
AAAAAAATGCTAATAATTTGGGGGCAGTTTTTTCCTTTATTTTTTTTTCCAAGTTCAAATTTAC
TTTTATTTTTGCTGATTTGATGTGGTTTCAACTAACCCAAGGTCTCACAATGTTCAAATGCCGG
CTGACTCTACGGCATTTTGTAGGTCCCTGCCCCCCGTCCGTGAAGGGGTGTGCCATACTACCTT
AAATGCAAACACTAGATATGCAAAACTGGATTTTTTTAATTTATTTTTTAAAAGAGGGAGGCGT
GGTATATTAAAATGATTTTACTAAGAGAAAAAATATTTTTTTAAGGATGCTCAGAAGAAATTGA
TAATCTGTGTGAATATGTTTTAGATGTTTATATACATTTTGAAGAGACCCAGTAGCCCATAGCA
CAACTTTTGTGAACATCTGATATGTTTTCAAGTGGCTATCTAGGTTAAGGTTCATCATTAGTAC
CCCCACCCCACCGCCACCTAGAAGTCCATCTTAAACAATTTTTGTAAATTCTTTCAACACTGAT
GTCCATCTTTGTCTTCGTTTCAGTTAAGCTCAGTAGCGAATGTGGGAACCCTCTTCTCACCTTC
TCTGGGGGAGAAACCCTCTTGGCTAATGGCTCTTCCCTGGCATTATCAATAACCACCGGGGACT
CTCTGGCTTCCAGATCCATCTGCCTGAGACCCCAAGGTCCTCTCCTCCCAAGAGGGGAGATGGA
GCAGCAGTTGACTCCTGGTCCCCTTCCTACTTCAGCCTGGATGTGGGGCTGGTGGAGGTGACCG
AGCCTGGGTCTCCACCCCAGGAGCCTCTGCATGTGTGGTTCGTGGCCTTCCTCTCACCCACTGG
GAAAACCAGACAGCCTCACACTCTGTTCCCCATCGCTCATTGGCTTGATTCAAGTGAAACTCCA
ACCAGCCTTTGTGGTTTTTTGTTTTTTTTTTAATCCTTCATAACCATTCTCTTAATTTGAACTT
GTAGCTTGGGCTTTAAGGTAGCATGGCTTGATTGCTGTCGACCTAACGTTCCAGTGCACAGCGA
TCCACGGCCACTGAATGTTACACACATCTTGCTAGACTAGTATAAAATCATTGGGTAATTGTTG
GTTTAATGACCTGAAAGGTGTTCAGTTTGGGGTTTTTTGGGGGGAGGGAGGGGTTGTTTGTTTT
TCTTTTTTTTTTTTTAATTTGAGAATTTAGGGGGATATTTTTTGGTTCCAAATTTAAAAAAAAG
TCAAAAGCTATTTTGATTTTTAGTGCAAACTAGGGCTAGGAACGTAGCCTCCATCACGACAACC
ACACCGCTTCGCTCTGCCATCCACCCACTGCAGCAGCATCTTCGAGAATAAAGCAATATAGTTT
ACTACATTTTTTTTAATTGAAGGTCAGCCATGCTTTTCTGTATTATATTGCATATGAAATTGTT
TACAAAAGAAACACTAACTCATACTTCTCTTTATCAGTTGAAAGTGACACACAGGGACAGAGGA
AAATTGGAGGGCAGGGGAGGGAGGGGAGACAGGTTTTTTTTGTTTGTTTGTCTTTTTGTTTTTT
CTTGAATGTGCTTTACTAACCAGATCCTCCGAGGAAGGCAAAAGCCAGACAGACAGACAGACAG
AGAGTAGAGAAGCGGGGCAGGCTGCAGGTAAGCACACTGCACAAGAGACACTGGCTGGCTCCCC
CACCTCAGCTAGAGCAGAAGACAAACAGCTCAGCCCAGTCCTGGGCACAGACACTACGCAAGGC
GACGTTGGAATTGAAGCAATACTTTAATCCTTTTTTAAGTTTGCTTCCTTTTTTTTTCCTTTCT
TTTTCTTTCACCAAAAAAAAAAATATAGACTAAAATACAAAAACAAACAGAAAACATATAAATA
AAACCCACCCCTCTCTGGGAAACAACCATAATTCAAACATGGCTATTTAGTAATCAGAAGGTAT
TGTCTCAGACAGGATTTCATTTCCGGGAGGCAGGGCATGAGGGGATGAGGGGGGAGGGGAGCGG
GACTGAGAGACAGTTCCAGAGCCTCCGTGGAAGGCTTCTACTGCTGTATTCTGTACATACTGTA
CCACCCTGTGTGGGGTCTGTGAGTGTGCTCTTGAGTAGTGTGGGCTAGCCAATCTGCCATTCAT
GGTGTTATAAACTCGGAATTCCATATGTAATAGGATGCAAGTCTAAGCGTTTCATGTGGACATA
AATGTATCTAAATAAAACTTCCCCTAGCACTGTGGCTGACCTCACCCTTACTTTTATACTTTAG
TATGAAACTGATGAGAACTTTGGTAGTGAGTATTTTTTTTATATATATATACATATATATATAT
CTATATATATATATATATCTCAAGCATCTTTCAGGTCTTTGTGTGTGGCTTTCTTAAAGCCCTG
TTGTAAAAAAAAAAAAATTACTATGTGGATGGCAGTCTCTCACATCACAGATGTGGAAAGTATA
ATTTTATATTTGTATTTTCAAATAAATAAGTTTGTGAAAGGTTTCCATCCTCTACTGTGGTCCA
GAAATCAATGTGTTTGTCTGACAAAAAAAATAATAAAATAAACTGTTTTGAACAGA

hide sequence

RefSeq Acc Id:

XM_039087661 ⟹ XP_038943589

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,640,960 - 74,007,497 (-)	NCBI
mRatBN7.2	10	73,143,760 - 73,510,202 (-)	NCBI

RefSeq Acc Id:

XM_039087663 ⟹ XP_038943591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,640,960 - 74,007,497 (-)	NCBI
mRatBN7.2	10	73,143,760 - 73,510,195 (-)	NCBI

RefSeq Acc Id:

XM_039087664 ⟹ XP_038943592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,648,508 - 74,007,497 (-)	NCBI
mRatBN7.2	10	73,143,760 - 73,510,198 (-)	NCBI

RefSeq Acc Id:

XM_039087667 ⟹ XP_038943595

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,640,960 - 74,007,497 (-)	NCBI
mRatBN7.2	10	73,143,760 - 73,510,193 (-)	NCBI

RefSeq Acc Id:

XM_039087669 ⟹ XP_038943597

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,640,960 - 74,007,497 (-)	NCBI
mRatBN7.2	10	73,143,760 - 73,510,198 (-)	NCBI

RefSeq Acc Id:

XM_039087672 ⟹ XP_038943600

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,640,960 - 74,007,497 (-)	NCBI
mRatBN7.2	10	73,143,760 - 73,510,191 (-)	NCBI

RefSeq Acc Id:

XM_039087674 ⟹ XP_038943602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,648,508 - 73,847,413 (-)	NCBI
mRatBN7.2	10	73,143,760 - 73,350,168 (-)	NCBI

RefSeq Acc Id:

XM_039087676 ⟹ XP_038943604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,648,508 - 73,826,149 (-)	NCBI
mRatBN7.2	10	73,143,760 - 73,325,617 (-)	NCBI

RefSeq Acc Id:

XM_063270134 ⟹ XP_063126204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,648,508 - 74,007,497 (-)	NCBI

RefSeq Acc Id:

XM_063270135 ⟹ XP_063126205

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,648,508 - 74,007,497 (-)	NCBI

RefSeq Acc Id:

XM_063270136 ⟹ XP_063126206

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,648,508 - 74,007,497 (-)	NCBI

RefSeq Acc Id:

XM_063270137 ⟹ XP_063126207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,648,521 - 74,007,497 (-)	NCBI

RefSeq Acc Id:

XM_063270138 ⟹ XP_063126208

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	73,648,521 - 74,007,497 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001417161	(Get FASTA)	NCBI Sequence Viewer
	NP_001417162	(Get FASTA)	NCBI Sequence Viewer
	NP_001417163	(Get FASTA)	NCBI Sequence Viewer
	NP_001417164	(Get FASTA)	NCBI Sequence Viewer
	NP_001417165	(Get FASTA)	NCBI Sequence Viewer
	NP_001417166	(Get FASTA)	NCBI Sequence Viewer
	NP_001417167	(Get FASTA)	NCBI Sequence Viewer
	NP_001417168	(Get FASTA)	NCBI Sequence Viewer
	XP_017453179	(Get FASTA)	NCBI Sequence Viewer
	XP_038943589	(Get FASTA)	NCBI Sequence Viewer
	XP_038943591	(Get FASTA)	NCBI Sequence Viewer
	XP_038943592	(Get FASTA)	NCBI Sequence Viewer
	XP_038943595	(Get FASTA)	NCBI Sequence Viewer
	XP_038943597	(Get FASTA)	NCBI Sequence Viewer
	XP_038943600	(Get FASTA)	NCBI Sequence Viewer
	XP_038943602	(Get FASTA)	NCBI Sequence Viewer
	XP_038943604	(Get FASTA)	NCBI Sequence Viewer
	XP_063126204	(Get FASTA)	NCBI Sequence Viewer
	XP_063126205	(Get FASTA)	NCBI Sequence Viewer
	XP_063126206	(Get FASTA)	NCBI Sequence Viewer
	XP_063126207	(Get FASTA)	NCBI Sequence Viewer
	XP_063126208	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM05636	(Get FASTA)	NCBI Sequence Viewer
	EDM05637	(Get FASTA)	NCBI Sequence Viewer
	EDM05638	(Get FASTA)	NCBI Sequence Viewer
	EDM05639	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003164.8
	ENSRNOP00000087497
	ENSRNOP00000087497.2
	ENSRNOP00000090730
	ENSRNOP00000090730.2
	ENSRNOP00000094550.1
	ENSRNOP00000096507
	ENSRNOP00000096507.1
	ENSRNOP00000107092
	ENSRNOP00000107092.1

RefSeq Acc Id:	XP_017453179 ⟸ XM_017597690
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6AAP6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC EIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPG FAPSYGYQFPALLPYLNASFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPTSPAGSNPARP GGFPGANSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH hide sequence

Ensembl Acc Id:

ENSRNOP00000003164 ⟸ ENSRNOT00000003164

RefSeq Acc Id:	XP_038943589 ⟸ XM_039087661
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038943597 ⟸ XM_039087669
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038943592 ⟸ XM_039087664
- Peptide Label:	isoform X5
- UniProtKB:	A6HHY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038943591 ⟸ XM_039087663
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038943595 ⟸ XM_039087667
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038943600 ⟸ XM_039087672
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038943602 ⟸ XM_039087674
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038943604 ⟸ XM_039087676
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I6AAP6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000094550 ⟸ ENSRNOT00000109508

Ensembl Acc Id:

ENSRNOP00000096507 ⟸ ENSRNOT00000099554

Ensembl Acc Id:

ENSRNOP00000090730 ⟸ ENSRNOT00000106986

Ensembl Acc Id:

ENSRNOP00000087497 ⟸ ENSRNOT00000112171

RefSeq Acc Id:	XP_063126206 ⟸ XM_063270136
- Peptide Label:	isoform X7
- UniProtKB:	A6HHY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126205 ⟸ XM_063270135
- Peptide Label:	isoform X4
- UniProtKB:	A6HHY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126204 ⟸ XM_063270134
- Peptide Label:	isoform X1
- UniProtKB:	A6HHY1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126208 ⟸ XM_063270138
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063126207 ⟸ XM_063270137
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6GG20 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000107092 ⟸ ENSRNOT00000153490

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LWE6-F1-model_v2	AlphaFold	F1LWE6	1-278	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560397	AgrOrtholog
BioCyc Gene	G2FUF-23711	BioCyc
Ensembl Genes	ENSRNOG00000025338	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003164.10	UniProtKB/TrEMBL
	ENSRNOT00000099554	ENTREZGENE
	ENSRNOT00000099554.2	UniProtKB/TrEMBL
	ENSRNOT00000106986	ENTREZGENE
	ENSRNOT00000106986.2	UniProtKB/TrEMBL
	ENSRNOT00000109508.2	UniProtKB/TrEMBL
	ENSRNOT00000112171	ENTREZGENE
	ENSRNOT00000112171.2	UniProtKB/TrEMBL
	ENSRNOT00000153490	ENTREZGENE
	ENSRNOT00000153490.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	MSI_RRM2	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
NCBI Gene	360596	ENTREZGENE
PANTHER	RNA-BINDING PROTEIN MUSASHI HOMOLOG 2	UniProtKB/TrEMBL
	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PhenoGen	Msi2	PhenoGen
PROSITE	RRM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000025338	RatGTEx
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8I6AAP6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AQW7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GG20	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GL82_RAT	UniProtKB/TrEMBL
	A0ABK0L9H3_RAT	UniProtKB/TrEMBL
	A6HHY1	ENTREZGENE, UniProtKB/TrEMBL
	A6HHY2_RAT	UniProtKB/TrEMBL
	F1LWE6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-01-02	Msi2	musashi RNA-binding protein 2	Msi2	Musashi homolog 2 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-28	Msi2	Musashi homolog 2 (Drosophila)	RGD1560397_predicted	similar to RNA-binding protein Musashi2-S (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560397_predicted	similar to RNA-binding protein Musashi2-S (predicted)	LOC360596	similar to RNA-binding protein Musashi2-S	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC360596	similar to RNA-binding protein Musashi2-S			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)