Flot2 (flotillin 2) - Rat Genome Database

Name: Flot2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Flot2 (flotillin 2) Rattus norvegicus

Analyze

Symbol:

Flot2

Name:

flotillin 2

RGD ID:

70993

Description:

Enables ionotropic glutamate receptor binding activity and protease binding activity. Predicted to be involved in several processes, including negative regulation of macromolecule metabolic process; positive regulation of NF-kappaB transcription factor activity; and protein localization to cell periphery. Located in caveola and synapse. Part of flotillin complex. Is active in glutamatergic synapse. Is anchored component of presynaptic active zone membrane. Orthologous to human FLOT2 (flotillin 2); PARTICIPATES IN insulin signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

flotillin-2; MGC93331; REG-1; reggie-1; reggie1-1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FLOT2 (flotillin 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Flot2 (flotillin 2)	HGNC	NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Flot2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FLOT2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DHRS13 (dehydrogenase/reductase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Flot2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FLOT2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FLOT2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Flot2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FLOT2 (flotillin 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Flot2 (flotillin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	flot2b (flotillin 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	flot2a (flotillin 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Flo2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	62,926,047 - 62,947,759 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	62,920,665 - 62,947,756 (+)	Ensembl
Rnor_6.0	10	65,304,901 - 65,329,332 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	65,304,902 - 65,329,312 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	66,303,072 - 66,327,750 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	64,081,463 - 64,104,166 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	64,095,085 - 64,117,788 (+)	NCBI
Celera	10	61,904,365 - 61,926,029 (+)	NCBI		Celera
Cytogenetic Map	10	q25	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

8-Br-cAMP (ISO)

acetylsalicylic acid (ISO)

acrolein (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

aristolochic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

butanal (ISO)

carbon nanotube (ISO)

chloropicrin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diazinon (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

ethanol (ISO)

folic acid (ISO)

furan (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

ozone (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

rotenone (EXP)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

theophylline (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vincristine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterograde dendritic transport (ISO)

cell adhesion (IEA)

membrane raft assembly (ISO)

negative regulation of amyloid precursor protein catabolic process (ISO)

negative regulation of gene expression (ISO)

positive regulation of establishment of T cell polarity (ISO)

positive regulation of NF-kappaB transcription factor activity (ISO)

protein localization to plasma membrane (IBA,ISO)

protein localization to plasma membrane raft (ISO)

protein stabilization (ISO)

regulation of heterotypic cell-cell adhesion (ISO)

regulation of myoblast differentiation (IBA,ISO)

regulation of postsynaptic membrane neurotransmitter receptor levels (ISO)

regulation of toll-like receptor 3 signaling pathway (ISO)

Cellular Component

acrosomal membrane (ISO)

adherens junction (ISO)

anchored component of presynaptic active zone membrane (EXP,IDA)

apical plasma membrane (ISO)

basolateral plasma membrane (ISO)

caveola (IDA,ISO)

cell-cell contact zone (ISO)

cortical actin cytoskeleton (ISO)

cytoplasmic vesicle (IBA,ISO)

dendrite cytoplasm (IEA)

endocytic vesicle (ISO,ISS)

endosome (IEA,ISO,ISS)

flotillin complex (IBA,IDA,ISO)

glutamatergic synapse (EXP,IDA,ISO)

intracellular membrane-bounded organelle (ISO)

lamellipodium (ISO)

membrane (IEA,ISO)

membrane raft (ISO)

perinuclear region of cytoplasm (ISO)

plasma membrane (IBA,ISO)

synapse (EXP,IDA)

uropod (ISO)

vesicle (ISO)

Molecular Function

ionotropic glutamate receptor binding (IPI)

protease binding (IPI)

protein binding (IPI,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

insulin signaling pathway (IEA)

References

References - curated


1.	Boyken J, etal., Neuron. 2013 Apr 24;78(2):285-97. doi: 10.1016/j.neuron.2013.02.027.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA data from the GO Consortium
4.	John BA, etal., FEBS J. 2014 Apr;281(8):2074-87. doi: 10.1111/febs.12763. Epub 2014 Mar 6.
5.	Lang DM, etal., J Neurobiol 1998 Dec;37(4):502-23.
6.	MGD Curation, June 12, 2002
7.	MGD data from the GO Consortium
8.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.	Pipeline to import KEGG annotations from KEGG into RGD
10.	RGD automated import pipeline for gene-chemical interactions
11.	Suzuki T, etal., J Neurochem. 2011 Oct;119(1):64-77. doi: 10.1111/j.1471-4159.2011.07404.x. Epub 2011 Aug 22.
12.	Swanwick CC, etal., FEBS Lett. 2009 Apr 17;583(8):1226-30. Epub 2009 Mar 17.

Additional References at PubMed

PMID:9153235	PMID:12477932	PMID:12927782	PMID:12967676	PMID:14599293	PMID:15886206	PMID:16452278	PMID:17206938	PMID:17416589	PMID:17482312	PMID:18237819	PMID:19056867
PMID:19144954	PMID:19258392	PMID:19946888	PMID:20458337	PMID:20682791	PMID:21119006	PMID:21187433	PMID:21423176	PMID:21696602	PMID:22878913	PMID:23174179	PMID:23319823
PMID:23376485	PMID:23533145	PMID:23983584	PMID:24013648	PMID:24046456	PMID:25105415	PMID:25204797	PMID:27676653	PMID:27993509	PMID:30452906

Genomics

Comparative Map Data

Flot2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	62,926,047 - 62,947,759 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	10	62,920,665 - 62,947,756 (+)	Ensembl
Rnor_6.0	10	65,304,901 - 65,329,332 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	65,304,902 - 65,329,312 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	66,303,072 - 66,327,750 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	64,081,463 - 64,104,166 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	64,095,085 - 64,117,788 (+)	NCBI
Celera	10	61,904,365 - 61,926,029 (+)	NCBI		Celera
Cytogenetic Map	10	q25	NCBI

FLOT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	28,879,335 - 28,897,733 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	28,879,339 - 28,897,733 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	27,206,357 - 27,224,751 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	24,230,483 - 24,248,841 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	17	24,230,483 - 24,248,696	NCBI
Celera	17	24,065,775 - 24,084,131 (-)	NCBI
Cytogenetic Map	17	q11.2	NCBI
HuRef	17	23,414,667 - 23,432,931 (-)	NCBI		HuRef
CHM1_1	17	27,268,892 - 27,287,277 (-)	NCBI		CHM1_1

Flot2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	77,928,757 - 77,951,260 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	77,928,757 - 77,951,260 (+)	Ensembl
GRCm38	11	78,037,931 - 78,060,434 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	78,037,931 - 78,060,434 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	77,851,443 - 77,873,934 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	77,856,499 - 77,876,627 (+)	NCBI			mm8
Celera	11	85,537,567 - 85,560,033 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	46.74	NCBI

Flot2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	4,276,860 - 4,298,523 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	4,276,847 - 4,298,523 (+)	NCBI	ChiLan1.0	ChiLan1.0

FLOT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	28,385,192 - 28,403,523 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	28,385,191 - 28,405,585 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	27,876,424 - 27,894,836 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

DHRS13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	43,050,929 - 43,066,886 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	43,052,114 - 43,071,742 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	42,206,071 - 42,222,098 (-)	NCBI
ROS_Cfam_1.0	9	43,868,682 - 43,884,709 (-)	NCBI
UMICH_Zoey_3.1	9	42,652,184 - 42,668,203 (-)	NCBI
UNSW_CanFamBas_1.0	9	42,944,151 - 42,960,172 (-)	NCBI
UU_Cfam_GSD_1.0	9	43,022,851 - 43,038,879 (-)	NCBI

Flot2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	42,193,601 - 42,212,358 (-)	NCBI
SpeTri2.0	NW_004936538	5,071,546 - 5,090,287 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FLOT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	45,101,514 - 45,120,463 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	45,102,205 - 45,120,503 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	47,153,539 - 47,163,743 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FLOT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	22,639,403 - 22,658,311 (-)	NCBI
ChlSab1.1 Ensembl	16	22,639,381 - 22,658,194 (-)	Ensembl
Vero_WHO_p1.0	NW_023666075	7,449,441 - 7,468,230 (+)	NCBI

Flot2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624786	1,449,001 - 1,465,208 (-)	NCBI

Position Markers

AI548110

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	62,925,791 - 62,925,948 (-)	MAPPER	mRatBN7.2
Rnor_6.0	10	65,329,411 - 65,329,567	NCBI	Rnor6.0
Rnor_5.0	10	66,303,354 - 66,303,510	UniSTS	Rnor5.0
RGSC_v3.4	10	64,081,046 - 64,081,341	UniSTS	RGSC3.4
Celera	10	61,904,110 - 61,904,266	UniSTS
Cytogenetic Map	10	q25	UniSTS

RH138487

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	62,942,983 - 62,943,103 (-)	MAPPER	mRatBN7.2
Rnor_6.0	10	65,309,552 - 65,309,671	NCBI	Rnor6.0
Rnor_5.0	10	66,322,980 - 66,323,099	UniSTS	Rnor5.0
RGSC_v3.4	10	64,099,584 - 64,099,703	UniSTS	RGSC3.4
Celera	10	61,921,255 - 61,921,374	UniSTS
Cytogenetic Map	10	q25	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18167841	63167841	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	19606483	64606483	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	19606483	64606483	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29299504	64155584	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35392267	64155584	Rat
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35392457	63642539	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	42323132	87323132	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	42323132	87323132	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	cortical volumetric bone mineral density (CMO:0001730)	10	49444551	81709989	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49444551	81709989	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	49444551	81709989	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
2306787	Ean3	Experimental allergic neuritis QTL 3	3.1		nervous system integrity trait (VT:0010566)	body weight loss (CMO:0001399)	10	53797385	66979128	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
1331839	Eae18b	Experimental allergic encephalomyelitis QTL 18b	5.8	0.03	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	61248303	67785171	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61345276	81714865	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
631526	Bp76	Blood pressure QTL 76		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	61345413	66743655	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61345413	82564856	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	812
Count of miRNA genes:	203
Interacting mature miRNAs:	237
Transcripts:	ENSRNOT00000014104, ENSRNOT00000014118
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	56	40	19	40	8	11	74	35	36	11	8
Low			1	1		1					5
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001270800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001270801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_031830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_073076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_073077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF023302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF023303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF023304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB581049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U64999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000014104 ⟹ ENSRNOP00000014104

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	62,926,020 - 62,947,756 (+)	Ensembl
Rnor_6.0 Ensembl	10	65,304,902 - 65,329,312 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000014118 ⟹ ENSRNOP00000014118

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	62,920,665 - 62,947,756 (+)	Ensembl
Rnor_6.0 Ensembl	10	65,304,902 - 65,329,312 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078757 ⟹ ENSRNOP00000070199

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	62,926,047 - 62,947,756 (+)	Ensembl
Rnor_6.0 Ensembl	10	65,304,902 - 65,329,312 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088721 ⟹ ENSRNOP00000071636

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	62,920,665 - 62,947,756 (+)	Ensembl
Rnor_6.0 Ensembl	10	65,304,904 - 65,329,279 (-)	Ensembl

RefSeq Acc Id:

NM_001270800 ⟹ NP_001257729

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	62,926,047 - 62,947,759 (+)	NCBI
Rnor_6.0	10	65,304,901 - 65,329,312 (-)	NCBI
Rnor_5.0	10	66,303,072 - 66,327,750 (+)	NCBI
Celera	10	61,904,365 - 61,926,029 (+)	NCBI

Sequence:

show sequence

GGCTGGGGGAGGCGGGATAGGCTGGGCGCGGCCGGTGCTGCGGACCCGCCACAGCCCTCCAGGT
CGCTGCGGACCCAAGGCCTGCTTGCCTGCCAGCGGCACCATGGGCAATTGCCACACGGTGGGCC
CCAACGAGGCACTGGTGGTCTCAGGGGGCTGTTGTGGTTCTGACTACAAGCAGTATGTGTTTGG
CGGCTGGGCTTGGGCCTGGTGGTGTATCTCGGACACTCAGAGGATTTCCCTAGAGATTATGACG
TTGCAGCCCCGCTGTGAGGACGTAGAGACGGCCGAGGGGGTAGCTTTAACTGTGACGGGTGTCG
CCCAGGTGAAGATCATGACGGAGAAGGAGCTCCTGGCTGTAGCCTGTGAACAGTTCCTGGGCAA
GAACGTGCAGGACATTAAGAACGTCGTACTGCAGACCCTGGAGGGGCATCTACGCTCCATCCTT
GGGACTCTGACTGTGGAGCAGATTTATCAGGACCGAGACCAGTTTGCCAAGCTGGTGCGGGAAG
TGGCAGCCCCTGATGTTGGCCGTATGGGCATCGAGATCCTCAGCTTCACCATCAAGGATGTCTA
TGACAAAGTAGACTATCTGAGCTCCCTGGGCAAGACACAGACTGCCGTGGTACAGAGAGATGCA
GACATCGGTGTGGCAGAGGCAGAGCGGGACGCAGGCATCCGGGAAGCCGAGTGCAAGAAGGAAA
TGCTAGATGTGAAGTTCATGGCAGACACCAAGATTGCTGACTCCAAGAGAGCCTTTGAGCTGCA
AAAGTCAGCCTTCAGTGAGGAGGTCAACATCAAGACAGCTGAGGCCCAGTTGGCCTATGAGCTA
CAAGGGGCCAGAGAGCAACAGAAGATCCGGCAGGAAGAGATTGAGATTGAGGTAGTACAGCGCA
AGAAGCAGATCGCCGTGGAGGCGCAGGAGATCCTGCGCACAGACAAGGAGCTCATCGCCACAGT
GCGCCGCCCTGCAGAGGCAGAGGCCCACCGCATCCAGCAGATTGCTGAAGGCGAAAAGGTGAAA
CAAGTCCTCTTGGCACAAGCAGAAGCTGAGAAGATTCGCAAAATCGGGGAGGCAGAGGCAGCAG
TCATTGAGGCCATGGGCAAGGCCGAGGCCGAGCGGATGAAGCTTAAAGCTGAGGCCTACCAGAA
GTACGGGGATGCGGCCAAGATGGCCCTGGTGCTGGAGGCCCTGCCCCAGATTGCTGCCAAGATC
TCCGCACCCCTGACTAAAGTCGATGAGATTGTGGTTCTCAGTGGGGACAACAGCAAGGTGACAT
CAGAAGTGAACCGGCTGCTAGCAGAACTGCCTGCTTCTGTTCATGCCCTCACTGGTGTGGACCT
CTCAAAGATACCACTGATCAAGAATGCCACTGGTGCGCAGGTGTGAGGCTCCTGGCACTCGGCC
TCCAGCAGCTGCCTGCCCTTCCAGCGCCTGTTTTCAAGTCATGGGGACAGCGAGAACATTACTG
ACTCTGGTGCCTTATTTCGTAGGGACCAGAAGTGCTGCGAGTTCAGGCCATCTCTGGCTATCTT
CCCTTCTCTCCTGTCTGCCTTCTCTTTTTTTTCCACACCTTCACATTAACTGCCACATCCATCT
AGCCTGTCTCCTCATCTGCCATATGTGCCTCTTCCTCTGGCTCTGTTTTTCTCCCTTCTCCCAA
CTTCACACACATCATCTACTTTAACTGAAGTTGAACTTGTTTATGATAATCACTTGTCTGTCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGAGGAGTGGCCCCGCTGCTTCTCAAAATTCT
GGTGCCTTCAAGTTCTACATGTATCTGTCTGTCCTCGCTGGCCCTGGCAGAGCCCAGCATGGGT
ACAAGGGTTCTGCGTAGGACACCCACTCTCCTCTCTCCTGGTCTGAATCTCCAAGCGCTAAATG
CTGTTCCAGGAAACCCACATCTCACACAGTCTTGCCCTTTGAGGCCTAAGTGGCCATGGCCTAT
TGGCCGTAGCATAATGCCCTTCCCACACCGAGGCCCGGGCCTGCTGTCATACCTGCCCCTGTCC
CCTGCACCATAGAGGCACAGAAGCACAGCCTCCTGTCTGTAGCAGCTTCCTCAGTGTACTACTG
CCTTAGGAGGCCCTGCTTGTGCTCAGGGACATCCCTTCCGTTGGCTTGTCCTTGATTGGTGGGT
GGGTCTTAATCTGATCCCACTAAGTCTTTCTGGGGTCACTATCTAGCTCTGTTGGGGACAGGTA
AAGTTTATAGGCCTTCTTCCTGCTAGTGAATGGGGCTCTCCCAGGGGGCAAGGCTGTGCCAACC
GTAAGAGAATCAAGTGCTGAAGACTGGCCAAACTTCACTCCCTCTATGCCATTTTCTTCTTGGT
CAGCATAATGGGTTTCTAGCCATGGGAAGCAGCTAAGTGTTCTGTGTCTTTGCACCTGCACCAC
TGGTGGCAGAAGAACCCAGTGCCCAGGTGTCCTAGTAAGGGTGCAAGGGTGTCTGTCCCATGGG
CCCAGTCCCCAGCCCTGGCCTGCCCCGGCCTGTGTAGCTGTGCTGCATGTGAATGCTGCATGTC
TGGTCTGGGGTTTGGATATTGCACTGCCCCACTGCCTGTCCCCCGCTGGTGACAATAAAGATCT
CTTATAGCCACAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001270801 ⟹ NP_001257730

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	62,926,047 - 62,947,759 (+)	NCBI
Rnor_6.0	10	65,304,901 - 65,329,312 (-)	NCBI
Rnor_5.0	10	66,303,072 - 66,327,750 (+)	NCBI
Celera	10	61,904,365 - 61,926,029 (+)	NCBI

Sequence:

show sequence

GGCTGGGGGAGGCGGGATAGGCTGGGCGCGGCCGGTGCTGCGGACCCGCCACAGCCCTCCAGGT
CGCTGCGGACCCAAGGCCTGCTTGCCTGCCAGCGGCACCATGGGCAATTGCCACACGGTGGGCC
CCAACGAGGCACTGGTGGTCTCAGACTGTCTCTGGAGGTTATGACCATCCTGTGTCGCTGTGAG
AATATTGAGACGTCGGAGGGGGTCCCGCTATTCGTAACAGGGGTTGCACAGGATTTCCCTAGAG
ATTATGACGTTGCAGCCCCGCTGTGAGGACGTAGAGACGGCCGAGGGGGTAGCTTTAACTGTGA
CGGGTGTCGCCCAGGTGAAGATCATGACGGAGAAGGAGCTCCTGGCTGTAGCCTGTGAACAGTT
CCTGGGCAAGAACGTGCAGGACATTAAGAACGTCGTACTGCAGACCCTGGAGGGGCATCTACGC
TCCATCCTTGGGACTCTGACTGTGGAGCAGATTTATCAGGACCGAGACCAGTTTGCCAAGCTGG
TGCGGGAAGTGGCAGCCCCTGATGTTGGCCGTATGGGCATCGAGATCCTCAGCTTCACCATCAA
GGATGTCTATGACAAAGTAGACTATCTGAGCTCCCTGGGCAAGACACAGACTGCCGTGGTACAG
AGAGATGCAGACATCGGTGTGGCAGAGGCAGAGCGGGACGCAGGCATCCGGGAAGCCGAGTGCA
AGAAGGAAATGCTAGATGTGAAGTTCATGGCAGACACCAAGATTGCTGACTCCAAGAGAGCCTT
TGAGCTGCAAAAGTCAGCCTTCAGTGAGGAGGTCAACATCAAGACAGCTGAGGCCCAGTTGGCC
TATGAGCTACAAGGGGCCAGAGAGCAACAGAAGATCCGGCAGGAAGAGATTGAGATTGAGGTAG
TACAGCGCAAGAAGCAGATCGCCGTGGAGGCGCAGGAGATCCTGCGCACAGACAAGGAGCTCAT
CGCCACAGTGCGCCGCCCTGCAGAGGCAGAGGCCCACCGCATCCAGCAGATTGCTGAAGGCGAA
AAGGTGAAACAAGTCCTCTTGGCACAAGCAGAAGCTGAGAAGATTCGCAAAATCGGGGAGGCAG
AGGCAGCAGTCATTGAGGCCATGGGCAAGGCCGAGGCCGAGCGGATGAAGCTTAAAGCTGAGGC
CTACCAGAAGTACGGGGATGCGGCCAAGATGGCCCTGGTGCTGGAGGCCCTGCCCCAGATTGCT
GCCAAGATCTCCGCACCCCTGACTAAAGTCGATGAGATTGTGGTTCTCAGTGGGGACAACAGCA
AGGTGACATCAGAAGTGAACCGGCTGCTAGCAGAACTGCCTGCTTCTGTTCATGCCCTCACTGG
TGTGGACCTCTCAAAGATACCACTGATCAAGAATGCCACTGGTGCGCAGGTGTGAGGCTCCTGG
CACTCGGCCTCCAGCAGCTGCCTGCCCTTCCAGCGCCTGTTTTCAAGTCATGGGGACAGCGAGA
ACATTACTGACTCTGGTGCCTTATTTCGTAGGGACCAGAAGTGCTGCGAGTTCAGGCCATCTCT
GGCTATCTTCCCTTCTCTCCTGTCTGCCTTCTCTTTTTTTTCCACACCTTCACATTAACTGCCA
CATCCATCTAGCCTGTCTCCTCATCTGCCATATGTGCCTCTTCCTCTGGCTCTGTTTTTCTCCC
TTCTCCCAACTTCACACACATCATCTACTTTAACTGAAGTTGAACTTGTTTATGATAATCACTT
GTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGAGGAGTGGCCCCGCTGCTTCT
CAAAATTCTGGTGCCTTCAAGTTCTACATGTATCTGTCTGTCCTCGCTGGCCCTGGCAGAGCCC
AGCATGGGTACAAGGGTTCTGCGTAGGACACCCACTCTCCTCTCTCCTGGTCTGAATCTCCAAG
CGCTAAATGCTGTTCCAGGAAACCCACATCTCACACAGTCTTGCCCTTTGAGGCCTAAGTGGCC
ATGGCCTATTGGCCGTAGCATAATGCCCTTCCCACACCGAGGCCCGGGCCTGCTGTCATACCTG
CCCCTGTCCCCTGCACCATAGAGGCACAGAAGCACAGCCTCCTGTCTGTAGCAGCTTCCTCAGT
GTACTACTGCCTTAGGAGGCCCTGCTTGTGCTCAGGGACATCCCTTCCGTTGGCTTGTCCTTGA
TTGGTGGGTGGGTCTTAATCTGATCCCACTAAGTCTTTCTGGGGTCACTATCTAGCTCTGTTGG
GGACAGGTAAAGTTTATAGGCCTTCTTCCTGCTAGTGAATGGGGCTCTCCCAGGGGGCAAGGCT
GTGCCAACCGTAAGAGAATCAAGTGCTGAAGACTGGCCAAACTTCACTCCCTCTATGCCATTTT
CTTCTTGGTCAGCATAATGGGTTTCTAGCCATGGGAAGCAGCTAAGTGTTCTGTGTCTTTGCAC
CTGCACCACTGGTGGCAGAAGAACCCAGTGCCCAGGTGTCCTAGTAAGGGTGCAAGGGTGTCTG
TCCCATGGGCCCAGTCCCCAGCCCTGGCCTGCCCCGGCCTGTGTAGCTGTGCTGCATGTGAATG
CTGCATGTCTGGTCTGGGGTTTGGATATTGCACTGCCCCACTGCCTGTCCCCCGCTGGTGACAA
TAAAGATCTCTTATAGCCACAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_031830 ⟹ NP_114018

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	62,926,047 - 62,947,759 (+)	NCBI
Rnor_6.0	10	65,304,901 - 65,329,312 (-)	NCBI
Rnor_5.0	10	66,303,072 - 66,327,750 (+)	NCBI
RGSC_v3.4	10	64,081,463 - 64,104,166 (+)	RGD
Celera	10	61,904,365 - 61,926,029 (+)	NCBI

Sequence:

show sequence

GGCTGGGGGAGGCGGGATAGGCTGGGCGCGGCCGGTGCTGCGGACCCGCCACAGCCCTCCAGGT
CGCTGCGGACCCAAGGCCTGCTTGCCTGCCAGCGGCACCATGGGCAATTGCCACACGGTGGGCC
CCAACGAGGCACTGGTGGTCTCAGGGGGCTGTTGTGGTTCTGACTACAAGCAGTATGTGTTTGG
CGGCTGGGCTTGGGCCTGGTGGTGTATCTCGGACACTCAGAGACTGTCTCTGGAGGTTATGACC
ATCCTGTGTCGCTGTGAGAATATTGAGACGTCGGAGGGGGTCCCGCTATTCGTAACAGGGGTTG
CACAGGTGAAGATCATGACGGAGAAGGAGCTCCTGGCTGTAGCCTGTGAACAGTTCCTGGGCAA
GAACGTGCAGGACATTAAGAACGTCGTACTGCAGACCCTGGAGGGGCATCTACGCTCCATCCTT
GGGACTCTGACTGTGGAGCAGATTTATCAGGACCGAGACCAGTTTGCCAAGCTGGTGCGGGAAG
TGGCAGCCCCTGATGTTGGCCGTATGGGCATCGAGATCCTCAGCTTCACCATCAAGGATGTCTA
TGACAAAGTAGACTATCTGAGCTCCCTGGGCAAGACACAGACTGCCGTGGTACAGAGAGATGCA
GACATCGGTGTGGCAGAGGCAGAGCGGGACGCAGGCATCCGGGAAGCCGAGTGCAAGAAGGAAA
TGCTAGATGTGAAGTTCATGGCAGACACCAAGATTGCTGACTCCAAGAGAGCCTTTGAGCTGCA
AAAGTCAGCCTTCAGTGAGGAGGTCAACATCAAGACAGCTGAGGCCCAGTTGGCCTATGAGCTA
CAAGGGGCCAGAGAGCAACAGAAGATCCGGCAGGAAGAGATTGAGATTGAGGTAGTACAGCGCA
AGAAGCAGATCGCCGTGGAGGCGCAGGAGATCCTGCGCACAGACAAGGAGCTCATCGCCACAGT
GCGCCGCCCTGCAGAGGCAGAGGCCCACCGCATCCAGCAGATTGCTGAAGGCGAAAAGGTGAAA
CAAGTCCTCTTGGCACAAGCAGAAGCTGAGAAGATTCGCAAAATCGGGGAGGCAGAGGCAGCAG
TCATTGAGGCCATGGGCAAGGCCGAGGCCGAGCGGATGAAGCTTAAAGCTGAGGCCTACCAGAA
GTACGGGGATGCGGCCAAGATGGCCCTGGTGCTGGAGGCCCTGCCCCAGATTGCTGCCAAGATC
TCCGCACCCCTGACTAAAGTCGATGAGATTGTGGTTCTCAGTGGGGACAACAGCAAGGTGACAT
CAGAAGTGAACCGGCTGCTAGCAGAACTGCCTGCTTCTGTTCATGCCCTCACTGGTGTGGACCT
CTCAAAGATACCACTGATCAAGAATGCCACTGGTGCGCAGGTGTGAGGCTCCTGGCACTCGGCC
TCCAGCAGCTGCCTGCCCTTCCAGCGCCTGTTTTCAAGTCATGGGGACAGCGAGAACATTACTG
ACTCTGGTGCCTTATTTCGTAGGGACCAGAAGTGCTGCGAGTTCAGGCCATCTCTGGCTATCTT
CCCTTCTCTCCTGTCTGCCTTCTCTTTTTTTTCCACACCTTCACATTAACTGCCACATCCATCT
AGCCTGTCTCCTCATCTGCCATATGTGCCTCTTCCTCTGGCTCTGTTTTTCTCCCTTCTCCCAA
CTTCACACACATCATCTACTTTAACTGAAGTTGAACTTGTTTATGATAATCACTTGTCTGTCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGAGGAGTGGCCCCGCTGCTTCTCAAAATTCT
GGTGCCTTCAAGTTCTACATGTATCTGTCTGTCCTCGCTGGCCCTGGCAGAGCCCAGCATGGGT
ACAAGGGTTCTGCGTAGGACACCCACTCTCCTCTCTCCTGGTCTGAATCTCCAAGCGCTAAATG
CTGTTCCAGGAAACCCACATCTCACACAGTCTTGCCCTTTGAGGCCTAAGTGGCCATGGCCTAT
TGGCCGTAGCATAATGCCCTTCCCACACCGAGGCCCGGGCCTGCTGTCATACCTGCCCCTGTCC
CCTGCACCATAGAGGCACAGAAGCACAGCCTCCTGTCTGTAGCAGCTTCCTCAGTGTACTACTG
CCTTAGGAGGCCCTGCTTGTGCTCAGGGACATCCCTTCCGTTGGCTTGTCCTTGATTGGTGGGT
GGGTCTTAATCTGATCCCACTAAGTCTTTCTGGGGTCACTATCTAGCTCTGTTGGGGACAGGTA
AAGTTTATAGGCCTTCTTCCTGCTAGTGAATGGGGCTCTCCCAGGGGGCAAGGCTGTGCCAACC
GTAAGAGAATCAAGTGCTGAAGACTGGCCAAACTTCACTCCCTCTATGCCATTTTCTTCTTGGT
CAGCATAATGGGTTTCTAGCCATGGGAAGCAGCTAAGTGTTCTGTGTCTTTGCACCTGCACCAC
TGGTGGCAGAAGAACCCAGTGCCCAGGTGTCCTAGTAAGGGTGCAAGGGTGTCTGTCCCATGGG
CCCAGTCCCCAGCCCTGGCCTGCCCCGGCCTGTGTAGCTGTGCTGCATGTGAATGCTGCATGTC
TGGTCTGGGGTTTGGATATTGCACTGCCCCACTGCCTGTCCCCCGCTGGTGACAATAAAGATCT
CTTATAGCCACAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_073076

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	62,926,047 - 62,947,759 (+)	NCBI
Rnor_6.0	10	65,304,901 - 65,329,312 (-)	NCBI
Rnor_5.0	10	66,303,072 - 66,327,750 (+)	NCBI
Celera	10	61,904,365 - 61,926,029 (+)	NCBI

Sequence:

show sequence

GGCTGGGGGAGGCGGGATAGGCTGGGCGCGGCCGGTGCTGCGGACCCGCCACAGCCCTCCAGGT
CGCTGCGGACCCAAGGCCTGCTTGCCTGCCAGCGGCACCATGGGCAATTGCCACACGGTGGGCC
CCAACGAGGCACTGGTGGTCTCAGACTGTCTCTGGAGGTTATGACCATCCTGTGTCGCTGTGAG
AATATTGAGACGTCGGAGGGGGTCCCGCTATTCGTAACAGGGGTTGCACAGGTGAAGATCATGA
CGGAGAAGGAGCTCCTGGCTGTAGCCTGTGAACAGTTCCTGGGCAAGAACGTGCAGGACATTAA
GAACGTCGTACTGCAGACCCTGGAGGGGCATCTACGCTCCATCCTTGGGACTCTGACTGTGGAG
CAGATTTATCAGGACCGAGACCAGTTTGCCAAGCTGGTGCGGGAAGTGGCAGCCCCTGATGTTG
GCCGTATGGGCATCGAGATCCTCAGCTTCACCATCAAGGATGTCTATGACAAAGTAGACTATCT
GAGCTCCCTGGGCAAGACACAGACTGCCGTGGTACAGAGAGATGCAGACATCGGTGTGGCAGAG
GCAGAGCGGGACGCAGGCATCCGGGAAGCCGAGTGCAAGAAGGAAATGCTAGATGTGAAGTTCA
TGGCAGACACCAAGATTGCTGACTCCAAGAGAGCCTTTGAGCTGCAAAAGTCAGCCTTCAGTGA
GGAGGTCAACATCAAGACAGCTGAGGCCCAGTTGGCCTATGAGCTACAAGGGGCCAGAGAGCAA
CAGAAGATCCGGCAGGAAGAGATTGAGATTGAGGTAGTACAGCGCAAGAAGCAGATCGCCGTGG
AGGCGCAGGAGATCCTGCGCACAGACAAGGAGCTCATCGCCACAGTGCGCCGCCCTGCAGAGGC
AGAGGCCCACCGCATCCAGCAGATTGCTGAAGGCGAAAAGGTGAAACAAGTCCTCTTGGCACAA
GCAGAAGCTGAGAAGATTCGCAAAATCGGGGAGGCAGAGGCAGCAGTCATTGAGGCCATGGGCA
AGGCCGAGGCCGAGCGGATGAAGCTTAAAGCTGAGGCCTACCAGAAGTACGGGGATGCGGCCAA
GATGGCCCTGGTGCTGGAGGCCCTGCCCCAGATTGCTGCCAAGATCTCCGCACCCCTGACTAAA
GTCGATGAGATTGTGGTTCTCAGTGGGGACAACAGCAAGGTGACATCAGAAGTGAACCGGCTGC
TAGCAGAACTGCCTGCTTCTGTTCATGCCCTCACTGGTGTGGACCTCTCAAAGATACCACTGAT
CAAGAATGCCACTGGTGCGCAGGTGTGAGGCTCCTGGCACTCGGCCTCCAGCAGCTGCCTGCCC
TTCCAGCGCCTGTTTTCAAGTCATGGGGACAGCGAGAACATTACTGACTCTGGTGCCTTATTTC
GTAGGGACCAGAAGTGCTGCGAGTTCAGGCCATCTCTGGCTATCTTCCCTTCTCTCCTGTCTGC
CTTCTCTTTTTTTTCCACACCTTCACATTAACTGCCACATCCATCTAGCCTGTCTCCTCATCTG
CCATATGTGCCTCTTCCTCTGGCTCTGTTTTTCTCCCTTCTCCCAACTTCACACACATCATCTA
CTTTAACTGAAGTTGAACTTGTTTATGATAATCACTTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGTCTGTCTGTCTGTGAGGAGTGGCCCCGCTGCTTCTCAAAATTCTGGTGCCTTCAAGTTCTAC
ATGTATCTGTCTGTCCTCGCTGGCCCTGGCAGAGCCCAGCATGGGTACAAGGGTTCTGCGTAGG
ACACCCACTCTCCTCTCTCCTGGTCTGAATCTCCAAGCGCTAAATGCTGTTCCAGGAAACCCAC
ATCTCACACAGTCTTGCCCTTTGAGGCCTAAGTGGCCATGGCCTATTGGCCGTAGCATAATGCC
CTTCCCACACCGAGGCCCGGGCCTGCTGTCATACCTGCCCCTGTCCCCTGCACCATAGAGGCAC
AGAAGCACAGCCTCCTGTCTGTAGCAGCTTCCTCAGTGTACTACTGCCTTAGGAGGCCCTGCTT
GTGCTCAGGGACATCCCTTCCGTTGGCTTGTCCTTGATTGGTGGGTGGGTCTTAATCTGATCCC
ACTAAGTCTTTCTGGGGTCACTATCTAGCTCTGTTGGGGACAGGTAAAGTTTATAGGCCTTCTT
CCTGCTAGTGAATGGGGCTCTCCCAGGGGGCAAGGCTGTGCCAACCGTAAGAGAATCAAGTGCT
GAAGACTGGCCAAACTTCACTCCCTCTATGCCATTTTCTTCTTGGTCAGCATAATGGGTTTCTA
GCCATGGGAAGCAGCTAAGTGTTCTGTGTCTTTGCACCTGCACCACTGGTGGCAGAAGAACCCA
GTGCCCAGGTGTCCTAGTAAGGGTGCAAGGGTGTCTGTCCCATGGGCCCAGTCCCCAGCCCTGG
CCTGCCCCGGCCTGTGTAGCTGTGCTGCATGTGAATGCTGCATGTCTGGTCTGGGGTTTGGATA
TTGCACTGCCCCACTGCCTGTCCCCCGCTGGTGACAATAAAGATCTCTTATAGCCACAAAAAAA
AAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_073077

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	62,926,047 - 62,947,759 (+)	NCBI
Rnor_6.0	10	65,304,901 - 65,329,312 (-)	NCBI
Rnor_5.0	10	66,303,072 - 66,327,750 (+)	NCBI
Celera	10	61,904,365 - 61,926,029 (+)	NCBI

Sequence:

show sequence

GGCTGGGGGAGGCGGGATAGGCTGGGCGCGGCCGGTGCTGCGGACCCGCCACAGCCCTCCAGGT
CGCTGCGGACCCAAGGCCTGCTTGCCTGCCAGCGGCACCATGGGCAATTGCCACACGGTGGGCC
CCAACGAGGCACTGGTGGTCTCAGGGGGCTGTTGTGGTTCTGACTACAAGCAGTATGTGTTTGG
CGGCTGGGCTTGGGCCTGGTGGTGTATCTCGGACACTCAGAGGTGAAGATCATGACGGAGAAGG
AGCTCCTGGCTGTAGCCTGTGAACAGTTCCTGGGCAAGAACGTGCAGGACATTAAGAACGTCGT
ACTGCAGACCCTGGAGGGGCATCTACGCTCCATCCTTGGGACTCTGACTGTGGAGCAGATTTAT
CAGGACCGAGACCAGTTTGCCAAGCTGGTGCGGGAAGTGGCAGCCCCTGATGTTGGCCGTATGG
GCATCGAGATCCTCAGCTTCACCATCAAGGATGTCTATGACAAAGTAGACTATCTGAGCTCCCT
GGGCAAGACACAGACTGCCGTGGTACAGAGAGATGCAGACATCGGTGTGGCAGAGGCAGAGCGG
GACGCAGGCATCCGGGAAGCCGAGTGCAAGAAGGAAATGCTAGATGTGAAGTTCATGGCAGACA
CCAAGATTGCTGACTCCAAGAGAGCCTTTGAGCTGCAAAAGTCAGCCTTCAGTGAGGAGGTCAA
CATCAAGACAGCTGAGGCCCAGTTGGCCTATGAGCTACAAGGGGCCAGAGAGCAACAGAAGATC
CGGCAGGAAGAGATTGAGATTGAGGTAGTACAGCGCAAGAAGCAGATCGCCGTGGAGGCGCAGG
AGATCCTGCGCACAGACAAGGAGCTCATCGCCACAGTGCGCCGCCCTGCAGAGGCAGAGGCCCA
CCGCATCCAGCAGATTGCTGAAGGCGAAAAGGTGAAACAAGTCCTCTTGGCACAAGCAGAAGCT
GAGAAGATTCGCAAAATCGGGGAGGCAGAGGCAGCAGTCATTGAGGCCATGGGCAAGGCCGAGG
CCGAGCGGATGAAGCTTAAAGCTGAGGCCTACCAGAAGTACGGGGATGCGGCCAAGATGGCCCT
GGTGCTGGAGGCCCTGCCCCAGATTGCTGCCAAGATCTCCGCACCCCTGACTAAAGTCGATGAG
ATTGTGGTTCTCAGTGGGGACAACAGCAAGGTGACATCAGAAGTGAACCGGCTGCTAGCAGAAC
TGCCTGCTTCTGTTCATGCCCTCACTGGTGTGGACCTCTCAAAGATACCACTGATCAAGAATGC
CACTGGTGCGCAGGTGTGAGGCTCCTGGCACTCGGCCTCCAGCAGCTGCCTGCCCTTCCAGCGC
CTGTTTTCAAGTCATGGGGACAGCGAGAACATTACTGACTCTGGTGCCTTATTTCGTAGGGACC
AGAAGTGCTGCGAGTTCAGGCCATCTCTGGCTATCTTCCCTTCTCTCCTGTCTGCCTTCTCTTT
TTTTTCCACACCTTCACATTAACTGCCACATCCATCTAGCCTGTCTCCTCATCTGCCATATGTG
CCTCTTCCTCTGGCTCTGTTTTTCTCCCTTCTCCCAACTTCACACACATCATCTACTTTAACTG
AAGTTGAACTTGTTTATGATAATCACTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCT
GTCTGTGAGGAGTGGCCCCGCTGCTTCTCAAAATTCTGGTGCCTTCAAGTTCTACATGTATCTG
TCTGTCCTCGCTGGCCCTGGCAGAGCCCAGCATGGGTACAAGGGTTCTGCGTAGGACACCCACT
CTCCTCTCTCCTGGTCTGAATCTCCAAGCGCTAAATGCTGTTCCAGGAAACCCACATCTCACAC
AGTCTTGCCCTTTGAGGCCTAAGTGGCCATGGCCTATTGGCCGTAGCATAATGCCCTTCCCACA
CCGAGGCCCGGGCCTGCTGTCATACCTGCCCCTGTCCCCTGCACCATAGAGGCACAGAAGCACA
GCCTCCTGTCTGTAGCAGCTTCCTCAGTGTACTACTGCCTTAGGAGGCCCTGCTTGTGCTCAGG
GACATCCCTTCCGTTGGCTTGTCCTTGATTGGTGGGTGGGTCTTAATCTGATCCCACTAAGTCT
TTCTGGGGTCACTATCTAGCTCTGTTGGGGACAGGTAAAGTTTATAGGCCTTCTTCCTGCTAGT
GAATGGGGCTCTCCCAGGGGGCAAGGCTGTGCCAACCGTAAGAGAATCAAGTGCTGAAGACTGG
CCAAACTTCACTCCCTCTATGCCATTTTCTTCTTGGTCAGCATAATGGGTTTCTAGCCATGGGA
AGCAGCTAAGTGTTCTGTGTCTTTGCACCTGCACCACTGGTGGCAGAAGAACCCAGTGCCCAGG
TGTCCTAGTAAGGGTGCAAGGGTGTCTGTCCCATGGGCCCAGTCCCCAGCCCTGGCCTGCCCCG
GCCTGTGTAGCTGTGCTGCATGTGAATGCTGCATGTCTGGTCTGGGGTTTGGATATTGCACTGC
CCCACTGCCTGTCCCCCGCTGGTGACAATAAAGATCTCTTATAGCCACAAAAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

XM_017597552 ⟹ XP_017453041

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	62,926,072 - 62,947,759 (+)	NCBI
Rnor_6.0	10	65,304,901 - 65,329,239 (-)	NCBI

Sequence:

show sequence

CCCAAGGCCTGCTTGCCTGCCAGCGGCACCATGGGCAATTGCCACACGGTGGGCCCCAACGAGG
CACTGGTGGTCTCAGGTGAAGATCATGACGGAGAAGGAGCTCCTGGCTGTAGCCTGTGAACAGT
TCCTGGGCAAGAACGTGCAGGACATTAAGAACGTCGTACTGCAGACCCTGGAGGGGCATCTACG
CTCCATCCTTGGGACTCTGACTGTGGAGCAGATTTATCAGGACCGAGACCAGTTTGCCAAGCTG
GTGCGGGAAGTGGCAGCCCCTGATGTTGGCCGTATGGGCATCGAGATCCTCAGCTTCACCATCA
AGGATGTCTATGACAAAGTAGACTATCTGAGCTCCCTGGGCAAGACACAGACTGCCGTGGTACA
GAGAGATGCAGACATCGGTGTGGCAGAGGCAGAGCGGGACGCAGGCATCCGGGAAGCCGAGTGC
AAGAAGGAAATGCTAGATGTGAAGTTCATGGCAGACACCAAGATTGCTGACTCCAAGAGAGCCT
TTGAGCTGCAAAAGTCAGCCTTCAGTGAGGAGGTCAACATCAAGACAGCTGAGGCCCAGTTGGC
CTATGAGCTACAAGGGGCCAGAGAGCAACAGAAGATCCGGCAGGAAGAGATTGAGATTGAGGTA
GTACAGCGCAAGAAGCAGATCGCCGTGGAGGCGCAGGAGATCCTGCGCACAGACAAGGAGCTCA
TCGCCACAGTGCGCCGCCCTGCAGAGGCAGAGGCCCACCGCATCCAGCAGATTGCTGAAGGCGA
AAAGGTGAAACAAGTCCTCTTGGCACAAGCAGAAGCTGAGAAGATTCGCAAAATCGGGGAGGCA
GAGGCAGCAGTCATTGAGGCCATGGGCAAGGCCGAGGCCGAGCGGATGAAGCTTAAAGCTGAGG
CCTACCAGAAGTACGGGGATGCGGCCAAGATGGCCCTGGTGCTGGAGGCCCTGCCCCAGATTGC
TGCCAAGATCTCCGCACCCCTGACTAAAGTCGATGAGATTGTGGTTCTCAGTGGGGACAACAGC
AAGGTGACATCAGAAGTGAACCGGCTGCTAGCAGAACTGCCTGCTTCTGTTCATGCCCTCACTG
GTGTGGACCTCTCAAAGATACCACTGATCAAGAATGCCACTGGTGCGCAGGTGTGAGGCTCCTG
GCACTCGGCCTCCAGCAGCTGCCTGCCCTTCCAGCGCCTGTTTTCAAGTCATGGGGACAGCGAG
AACATTACTGACTCTGGTGCCTTATTTCGTAGGGACCAGAAGTGCTGCGAGTTCAGGCCATCTC
TGGCTATCTTCCCTTCTCTCCTGTCTGCCTTCTCTTTTTTTTCCACACCTTCACATTAACTGCC
ACATCCATCTAGCCTGTCTCCTCATCTGCCATATGTGCCTCTTCCTCTGGCTCTGTTTTTCTCC
CTTCTCCCAACTTCACACACATCATCTACTTTAACTGAAGTTGAACTTGTTTATGATAATCACT
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGAGGAGTGGCCCCGCTGCTTC
TCAAAATTCTGGTGCCTTCAAGTTCTACATGTATCTGTCTGTCCTCGCTGGCCCTGGCAGAGCC
CAGCATGGGTACAAGGGTTCTGCGTAGGACACCCACTCTCCTCTCTCCTGGTCTGAATCTCCAA
GCGCTAAATGCTGTTCCAGGAAACCCACATCTCACACAGTCTTGCCCTTTGAGGCCTAAGTGGC
CATGGCCTATTGGCCGTAGCATAATGCCCTTCCCACACCGAGGCCCGGGCCTGCTGTCATACCT
GCCCCTGTCCCCTGCACCATAGAGGCACAGAAGCACAGCCTCCTGTCTGTAGCAGCTTCCTCAG
TGTACTACTGCCTTAGGAGGCCCTGCTTGTGCTCAGGGACATCCCTTCCGTTGGCTTGTCCTTG
ATTGGTGGGTGGGTCTTAATCTGATCCCACTAAGTCTTTCTGGGGTCACTATCTAGCTCTGTTG
GGGACAGGTAAAGTTTATAGGCCTTCTTCCTGCTAGTGAATGGGGCTCTCCCAGGGGGCAAGGC
TGTGCCAACCGTAAGAGAATCAAGTGCTGAAGACTGGCCAAACTTCACTCCCTCTATGCCATTT
TCTTCTTGGTCAGCATAATGGGTTTCTAGCCATGGGAAGCAGCTAAGTGTTCTGTGTCTTTGCA
CCTGCACCACTGGTGGCAGAAGAACCCAGTGCCCAGGTGTCCTAGTAAGGGTGCAAGGGTGTCT
GTCCCATGGGCCCAGTCCCCAGCCCTGGCCTGCCCCGGCCTGTGTAGCTGTGCTGCATGTGAAT
GCTGCATGTCTGGTCTGGGGTTTGGATATTGCACTGCCCCACTGCCTGTCCCCCGCTGGTGACA
ATAAAGATCTCTTATAGCCACA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001257729	(Get FASTA)	NCBI Sequence Viewer
	NP_001257730	(Get FASTA)	NCBI Sequence Viewer
	NP_114018	(Get FASTA)	NCBI Sequence Viewer
	XP_017453041	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC98727	(Get FASTA)	NCBI Sequence Viewer
	AAC98728	(Get FASTA)	NCBI Sequence Viewer
	AAC98729	(Get FASTA)	NCBI Sequence Viewer
	AAD00120	(Get FASTA)	NCBI Sequence Viewer
	AAH83550	(Get FASTA)	NCBI Sequence Viewer
	EDM05305	(Get FASTA)	NCBI Sequence Viewer
	EDM05306	(Get FASTA)	NCBI Sequence Viewer
	EDM05307	(Get FASTA)	NCBI Sequence Viewer
	EDM05308	(Get FASTA)	NCBI Sequence Viewer
	EDM05309	(Get FASTA)	NCBI Sequence Viewer
	Q9Z2S9	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_114018 ⟸ NM_031830
- Peptide Label:	isoform 1
- UniProtKB:	Q9Z2S9 (UniProtKB/Swiss-Prot), Q5XIW9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRLSLEVMTILCRCENIETSEG VPLFVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRD QFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDADIGVAEAERDAGI REAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLAYELQGAREQQKIRQEE IEIEVVQRKKQIAVEAQEILRTDKELIATVRRPAEAEAHRIQQIAEGEKVKQVLLAQAEAEKIR KIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALVLEALPQIAAKISAPLTKVDEIVVL SGDNSKVTSEVNRLLAELPASVHALTGVDLSKIPLIKNATGAQV hide sequence

RefSeq Acc Id:	NP_001257729 ⟸ NM_001270800
- Peptide Label:	isoform 2
- UniProtKB:	Q9Z2S9 (UniProtKB/Swiss-Prot), Q5XIW9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVETAEG VALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRD QFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDADIGVAEAERDAGI REAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLAYELQGAREQQKIRQEE IEIEVVQRKKQIAVEAQEILRTDKELIATVRRPAEAEAHRIQQIAEGEKVKQVLLAQAEAEKIR KIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALVLEALPQIAAKISAPLTKVDEIVVL SGDNSKVTSEVNRLLAELPASVHALTGVDLSKIPLIKNATGAQV hide sequence

RefSeq Acc Id:	NP_001257730 ⟸ NM_001270801
- Peptide Label:	isoform 3
- UniProtKB:	A0A0G2JXA8 (UniProtKB/TrEMBL), Q5XIW9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRS ILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQR DADIGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLAY ELQGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVRRPAEAEAHRIQQIAEGEK VKQVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALVLEALPQIAA KISAPLTKVDEIVVLSGDNSKVTSEVNRLLAELPASVHALTGVDLSKIPLIKNATGAQV hide sequence

RefSeq Acc Id:	XP_017453041 ⟸ XM_017597552
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIW9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPD VGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDADIGVAEAERDAGIREAECKKEMLDVK FMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLAYELQGAREQQKIRQEEIEIEVVQRKKQIA VEAQEILRTDKELIATVRRPAEAEAHRIQQIAEGEKVKQVLLAQAEAEKIRKIGEAEAAVIEAM GKAEAERMKLKAEAYQKYGDAAKMALVLEALPQIAAKISAPLTKVDEIVVLSGDNSKVTSEVNR LLAELPASVHALTGVDLSKIPLIKNATGAQV hide sequence

RefSeq Acc Id:

ENSRNOP00000014104 ⟸ ENSRNOT00000014104

RefSeq Acc Id:

ENSRNOP00000014118 ⟸ ENSRNOT00000014118

RefSeq Acc Id:

ENSRNOP00000070199 ⟸ ENSRNOT00000078757

RefSeq Acc Id:

ENSRNOP00000071636 ⟸ ENSRNOT00000088721

Protein Domains

PHB

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697474

Promoter ID:

EPDNEW_R7988

Type:

initiation region

Name:

Flot2_1

Description:

flotillin 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	65,329,269 - 65,329,329	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:70993	AgrOrtholog
Ensembl Genes	ENSRNOG00000009681	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000014104	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000014118	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000070199	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000071636	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014104	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000014118	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000078757	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000088721	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7133999	IMAGE-MGC_LOAD
InterPro	Band_7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Band_7/SPFH_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Flotillin_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Flotillin_fam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:83764	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93331	IMAGE-MGC_LOAD
NCBI Gene	83764	ENTREZGENE
PANTHER	PTHR13806	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Band_7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Flot	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Flot2	PhenoGen
SMART	PHB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF117892	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JXA8	ENTREZGENE, UniProtKB/TrEMBL
	FLOT2_RAT	UniProtKB/Swiss-Prot
	Q5XIW9	ENTREZGENE, UniProtKB/TrEMBL
	Q9Z2S9	ENTREZGENE
UniProt Secondary	Q9QX33	UniProtKB/Swiss-Prot
	Q9Z2S8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-07-09	Flot2	flotillin 2			Symbol and Name updated to reflect Human and Mouse nomenclature	70877	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	enriched at the plasmamembrane and in micropatches in neurons and in nonneuronal cells	70739

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)