FLOT2 (flotillin 2) - Rat Genome Database

Name: FLOT2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: FLOT2 (flotillin 2) Sus scrofa

Analyze

Symbol:

FLOT2

Name:

flotillin 2

RGD ID:

13964603

Description:

ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); INVOLVED IN regulation of heterotypic cell-cell adhesion (ortholog); regulation of toll-like receptor 3 signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); caveola (ortholog); flotillin complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

flotillin-2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FLOT2 (flotillin 2)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Flot2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Flot2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Flot2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FLOT2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DHRS13 (dehydrogenase/reductase 13)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Flot2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FLOT2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Flot2 (flotillin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	45,101,531 - 45,120,455 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	45,102,205 - 45,120,503 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	47,153,539 - 47,163,743 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterograde dendritic transport (IEA)

cell adhesion (IEA)

negative regulation of amyloid precursor protein catabolic process (IEA)

negative regulation of gene expression (IEA)

positive regulation of canonical NF-kappaB signal transduction (IEA)

positive regulation of establishment of T cell polarity (IEA)

protein localization to plasma membrane (IBA,IEA)

protein localization to plasma membrane raft (IEA)

protein stabilization (IEA)

regulation of heterotypic cell-cell adhesion (ISO)

regulation of myoblast differentiation (IBA,IEA)

regulation of postsynaptic membrane neurotransmitter receptor levels (IEA)

regulation of toll-like receptor 3 signaling pathway (ISO)

Cellular Component

acrosomal membrane (IEA)

adherens junction (IEA)

apical plasma membrane (ISO)

basolateral plasma membrane (IEA)

caveola (IEA,ISO)

cell-cell contact zone (IEA)

cortical actin cytoskeleton (IEA)

cytoplasmic vesicle (IBA,IEA)

dendrite cytoplasm (IEA)

endocytic vesicle (IEA)

endosome (IEA)

flotillin complex (IBA,IEA,ISO)

glutamatergic synapse (IEA,ISO)

intracellular membrane-bounded organelle (IEA)

lamellipodium (IEA)

membrane (IEA)

membrane raft (IEA)

perinuclear region of cytoplasm (IEA)

plasma membrane (IBA,IEA)

presynaptic active zone membrane (ISO)

synapse (ISO)

uropod (IEA)

vesicle (IEA)

Molecular Function

ionotropic glutamate receptor binding (ISO)

protease binding (IBA)

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:30032202

Genomics

Comparative Map Data

FLOT2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	45,101,531 - 45,120,455 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	45,102,205 - 45,120,503 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	47,153,539 - 47,163,743 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FLOT2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	28,879,339 - 28,897,733 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	28,879,335 - 28,897,733 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	27,206,357 - 27,224,751 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	24,230,483 - 24,248,841 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	24,230,483 - 24,248,696	NCBI
Celera	17	24,065,775 - 24,084,131 (-)	NCBI		Celera
Cytogenetic Map	17	q11.2	NCBI
HuRef	17	23,414,667 - 23,432,931 (-)	NCBI		HuRef
CHM1_1	17	27,268,892 - 27,287,277 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	29,822,120 - 29,840,508 (-)	NCBI		T2T-CHM13v2.0

Flot2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	77,928,757 - 77,951,260 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	77,928,757 - 77,951,260 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	78,037,931 - 78,060,434 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	78,037,931 - 78,060,434 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	77,851,443 - 77,873,934 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	77,856,499 - 77,876,627 (+)	NCBI		MGSCv36	mm8
Celera	11	85,537,567 - 85,560,033 (+)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	46.74	NCBI

Flot2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	63,424,084 - 63,445,811 (+)	NCBI		GRCr8
mRatBN7.2	10	62,926,047 - 62,947,759 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	62,920,665 - 62,947,756 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	67,557,437 - 67,579,161 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	67,062,800 - 67,084,524 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	62,534,264 - 62,556,121 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	65,304,901 - 65,329,332 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	65,304,902 - 65,329,312 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	66,303,072 - 66,327,750 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	64,081,463 - 64,104,166 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	64,095,085 - 64,117,788 (+)	NCBI
Celera	10	61,904,365 - 61,926,029 (+)	NCBI		Celera
Cytogenetic Map	10	q25	NCBI

Flot2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	4,276,860 - 4,298,523 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	4,276,847 - 4,298,523 (+)	NCBI	ChiLan1.0	ChiLan1.0

FLOT2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	35,559,750 - 35,578,101 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	37,440,913 - 37,459,263 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	27,876,424 - 27,894,836 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	28,385,192 - 28,403,523 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	28,385,191 - 28,405,585 (+)	Ensembl	panpan1.1		panPan2

DHRS13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	43,050,929 - 43,066,886 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	43,052,114 - 43,071,742 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	42,206,071 - 42,222,098 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	43,868,682 - 43,884,709 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	43,868,682 - 43,884,742 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	42,652,184 - 42,668,203 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	42,944,151 - 42,960,172 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	43,022,851 - 43,038,879 (-)	NCBI		UU_Cfam_GSD_1.0

Flot2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	42,193,601 - 42,212,358 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936538	5,071,546 - 5,090,313 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936538	5,071,546 - 5,090,287 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FLOT2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	22,639,403 - 22,658,311 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	22,639,381 - 22,658,194 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	7,449,441 - 7,468,230 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Flot2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	1,450,234 - 1,465,102 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	1,449,001 - 1,465,208 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in FLOT2
581 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium				1					1
Low	9	4	3	4	2	23	2	3	2
Below cutoff	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021067496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021067497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021067498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021067499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021067500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021067501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK389415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP236132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01094184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000019349 ⟹ ENSSSCP00000018836

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	45,101,531 - 45,120,438 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000029155 ⟹ ENSSSCP00000022920

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	45,101,531 - 45,112,946 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000063241 ⟹ ENSSSCP00000044809

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	45,101,531 - 45,120,455 (-)	Ensembl

RefSeq Acc Id:

XM_021067496 ⟹ XP_020923155

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	45,102,205 - 45,120,503 (-)	NCBI

Sequence:

show sequence

CACACTTCCGGCGAGGCTGCGGCCGCGGAGGGGCGCCGGCGGGCGGCCGCTGGGGGTGGCGGGA
TAGGCTGGGCGCGGCCGGCGGTGCGGGCCCGCTGCTGCTGTCCAGGTCTCGGCGGCCCCCCGAG
GGCCCTCCGTCCCTCCGGCGCCATGGGCAATTGCCACACGGTGGGGCCCAACGAGGCGCTGGTG
GTTTCAGGGGGCTGTTGTGGTTCCGACTATAAACAGTATGTGTTTGGCGGCTGGGCCTGGGCCT
GGTGGTGTATCTCCGACACTCAGAGGATTTCCCTAGAGATTATGACGTTGCAGCCCCGCTGCGA
GGACGTAGAGACGGCCGAGGGGGTAGCTTTAACTGTGACGGGTGTCGCCCAGGTGAAGATCATG
ACAGAGAAGGAGCTCCTGGCCGTGGCCTGCGAGCAGTTCCTGGGCAAGAACGTGCAGGACATCA
AGAATGTCGTCCTGCAGACCCTGGAGGGGCACCTGCGCTCCATCCTCGGAACCCTGACGGTGGA
GCAGATTTATCAGGACCGGGACCAGTTTGCCAAGCTGGTGCGGGAGGTGGCAGCCCCTGACGTC
GGCCGCATGGGCATCGAGATTCTCAGCTTTACCATCAAGGACGTATATGACAAAGTGGACTATC
TGAGCTCCCTGGGCAAGACGCAGACTGCGGTGGTGCAGAGAGATGCTGACATCGGGGTGGCCGA
GGCCGAGCGAGACGCGGGCATCCGGGAAGCCGAGTGCAAGAAGGAGATGCTGGACGTGAAGTTC
ATGGCAGACACGAAGATCGCCGACTCCAAGCGGGCCTTCGAGCTGCAGAAGTCGGCCTTCAGTG
AGGAGGTCAACATCAAGACAGCTGAGGCCCAGCTGGCCTATGAGCTCCAAGGGGCCCGCGAGCA
GCAGAAGATCCGGCAGGAAGAGATCGAGATTGAGGTCGTGCAGCGCAAGAAGCAGATTGCGGTG
GAGGCGCAGGAGATCCTGCGCACAGACAAGGAGCTCATCGCCACGGTGCACCGCCCCGCCGAGG
CTGAGGCCCACCGCATACAGCAGATCGCCGAGGGCGAGAAGGTGAAGCAGGTCCTCTTAGCACA
GGCAGAGGCTGAGAAGATCCGCAAAATTGGAGAGGCGGAGGCAGCGGTCATTGAAGCGATGGGC
AAGGCAGAGGCTGAGCGGATGAAACTCAAGGCTGAGGCCTACCAGAAATACGGGGACGCGGCCA
AGATGGCCTTGGTGCTGGAGGCCCTGCCCCAGATCGCTGCCAAAATCTCCGCCCCACTGACCAA
AGTCGATGAGATTGTGGTCCTCAGCGGGGACAACAGCACGGTGACATCAGAAGTGAACCGACTG
CTGGCCGAGCTGCCTGCCTCTGTGCACGCCCTCACTGGCGTGGACCTTTCTAAGATACCACTGG
TCAAGAAGGCCACCGGGGCGCAGGTGTGAGGTCCCGAAGGCTCACGCCCTTCAGCAGCCACCGC
CCCCCCCTCCAGCACCCGTTTTAATACCACAGGGACAACGGGAACGTTACTGACTCTGGTGCCT
TATTTTGTAGGGACCAGAAGTGCTGCGTGTTCAGGCCTCTGGCTGTCTTCCCTTCTCCCCTGTC
TCTGTCTCCTTCCTCTTCTCCACCCACACCCCCACTTTCACTGCCACATTCGTCTGGTTTGTCT
CTTCCACCATCACCTCCCTGCACGTCTCTTCCTTTGTCTGTCTGTCTTTTTCTCTCCCTCTCTC
CTCCCTCCTTCTACACACGTCCTGTAGTTTCAACTGAAGATGTCTATTACAATCACTGTCTGTC
TGTCAGGGGTGGCCCTGCTGCCCCTCAGAATCCTGGTGCCTTGAAGTTTTCTGTGCATCTGTCC
GTTCCCCCTGTGGCCCAGGCCAGAGCTTCAGCATGGGTGCAGGGGGTCTGGGTAGGGCGACCAT
CCTGCCCCGCTCCTGGCCTGGTCTTCCCAGCCCTCACCCTGTCCCCAGGAAGCCCCCAGCCTCA
CCCACGCCGGCCCCTCTCAGCCCAGGCAGCTATGGCTGCAGGCCCAGGGCCATTGCCCTTCTCT
AACCCCTGCCCGGCCCCAGGCCTGCTCTCATACCTTAGCTCTCTCCCCCCGCCCAGGGGCACAG
AGGCAAGGCCTCCTGTGTATAGCAGCTCCCTCAGTTTACTACTGCCTTAGGAGGCCCCTGCTTG
TGCTCAGGGAAGTCCCCTTCCTGGACATGTCCCTACCAGGTGGAGGGGGGCTTGGTCCCAACTC
TGCTACCCCTTTTCTGGGATCAGGATCTAGCCCTTCTGGGACTGGAAAGCGTGTAGACCCTCTT
CCTGCTAGGGCTGTGCTGTCCTGGGTTTTGGGCCGGGTCCTTCCCAGGGCAAAGTTCCGCCACC
CCTGTACAGAATCGAGTGCGGCAGACTGGCCAGACTCCATACCCCTGTGCCATCGTTCTTCCTG
GCCAGGGTGATAGGGTTCCAGCCATGGGGAAGCAGCCCCGTCCTCTGTCTCCTTGCTGCAGTGG
AGGCAGAAGAGCTCAGGGCCCAAGCATCCTGGCAGGGTCCCAGCCCCCCACCCCTTGCCCCAGC
CTGTGTAGCTGTTCGTGCATGTGGATGCTGCATGTCTGGTCTGGGGCTTGGATGCTGCACTGCC
CCGCTGCCTGTCCCTTCTGGTAAAATAAATATCTGGTCATGCCCCCAC

hide sequence

RefSeq Acc Id:

XM_021067497 ⟹ XP_020923156

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	45,102,206 - 45,120,497 (-)	NCBI

Sequence:

show sequence

TCCGGCGAGGCTGCGGCCGCGGAGGGGCGCCGGCGGGCGGCCGCTGGGGGTGGCGGGATAGGCT
GGGCGCGGCCGGCGGTGCGGGCCCGCTGCTGCTGTCCAGGTCTCGGCGGCCCCCCGAGGGCCCT
CCGTCCCTCCGGCGCCATGGGCAATTGCCACACGGTGGGGCCCAACGAGGCGCTGGTGGTTTCA
GGGGGCTGTTGTGGTTCCGACTATAAACAGTATGTGTTTGGCGGCTGGGCCTGGGCCTGGTGGT
GTATCTCCGACACTCAGAGACTGTCTCTGGAGGTTATGACCATCCTGTGTCGCTGTGAGAATAT
TGAGACGTCGGAGGGGGTCCCGCTATTCGTAACAGGGGTTGCACAGGTGAAGATCATGACAGAG
AAGGAGCTCCTGGCCGTGGCCTGCGAGCAGTTCCTGGGCAAGAACGTGCAGGACATCAAGAATG
TCGTCCTGCAGACCCTGGAGGGGCACCTGCGCTCCATCCTCGGAACCCTGACGGTGGAGCAGAT
TTATCAGGACCGGGACCAGTTTGCCAAGCTGGTGCGGGAGGTGGCAGCCCCTGACGTCGGCCGC
ATGGGCATCGAGATTCTCAGCTTTACCATCAAGGACGTATATGACAAAGTGGACTATCTGAGCT
CCCTGGGCAAGACGCAGACTGCGGTGGTGCAGAGAGATGCTGACATCGGGGTGGCCGAGGCCGA
GCGAGACGCGGGCATCCGGGAAGCCGAGTGCAAGAAGGAGATGCTGGACGTGAAGTTCATGGCA
GACACGAAGATCGCCGACTCCAAGCGGGCCTTCGAGCTGCAGAAGTCGGCCTTCAGTGAGGAGG
TCAACATCAAGACAGCTGAGGCCCAGCTGGCCTATGAGCTCCAAGGGGCCCGCGAGCAGCAGAA
GATCCGGCAGGAAGAGATCGAGATTGAGGTCGTGCAGCGCAAGAAGCAGATTGCGGTGGAGGCG
CAGGAGATCCTGCGCACAGACAAGGAGCTCATCGCCACGGTGCACCGCCCCGCCGAGGCTGAGG
CCCACCGCATACAGCAGATCGCCGAGGGCGAGAAGGTGAAGCAGGTCCTCTTAGCACAGGCAGA
GGCTGAGAAGATCCGCAAAATTGGAGAGGCGGAGGCAGCGGTCATTGAAGCGATGGGCAAGGCA
GAGGCTGAGCGGATGAAACTCAAGGCTGAGGCCTACCAGAAATACGGGGACGCGGCCAAGATGG
CCTTGGTGCTGGAGGCCCTGCCCCAGATCGCTGCCAAAATCTCCGCCCCACTGACCAAAGTCGA
TGAGATTGTGGTCCTCAGCGGGGACAACAGCACGGTGACATCAGAAGTGAACCGACTGCTGGCC
GAGCTGCCTGCCTCTGTGCACGCCCTCACTGGCGTGGACCTTTCTAAGATACCACTGGTCAAGA
AGGCCACCGGGGCGCAGGTGTGAGGTCCCGAAGGCTCACGCCCTTCAGCAGCCACCGCCCCCCC
CTCCAGCACCCGTTTTAATACCACAGGGACAACGGGAACGTTACTGACTCTGGTGCCTTATTTT
GTAGGGACCAGAAGTGCTGCGTGTTCAGGCCTCTGGCTGTCTTCCCTTCTCCCCTGTCTCTGTC
TCCTTCCTCTTCTCCACCCACACCCCCACTTTCACTGCCACATTCGTCTGGTTTGTCTCTTCCA
CCATCACCTCCCTGCACGTCTCTTCCTTTGTCTGTCTGTCTTTTTCTCTCCCTCTCTCCTCCCT
CCTTCTACACACGTCCTGTAGTTTCAACTGAAGATGTCTATTACAATCACTGTCTGTCTGTCAG
GGGTGGCCCTGCTGCCCCTCAGAATCCTGGTGCCTTGAAGTTTTCTGTGCATCTGTCCGTTCCC
CCTGTGGCCCAGGCCAGAGCTTCAGCATGGGTGCAGGGGGTCTGGGTAGGGCGACCATCCTGCC
CCGCTCCTGGCCTGGTCTTCCCAGCCCTCACCCTGTCCCCAGGAAGCCCCCAGCCTCACCCACG
CCGGCCCCTCTCAGCCCAGGCAGCTATGGCTGCAGGCCCAGGGCCATTGCCCTTCTCTAACCCC
TGCCCGGCCCCAGGCCTGCTCTCATACCTTAGCTCTCTCCCCCCGCCCAGGGGCACAGAGGCAA
GGCCTCCTGTGTATAGCAGCTCCCTCAGTTTACTACTGCCTTAGGAGGCCCCTGCTTGTGCTCA
GGGAAGTCCCCTTCCTGGACATGTCCCTACCAGGTGGAGGGGGGCTTGGTCCCAACTCTGCTAC
CCCTTTTCTGGGATCAGGATCTAGCCCTTCTGGGACTGGAAAGCGTGTAGACCCTCTTCCTGCT
AGGGCTGTGCTGTCCTGGGTTTTGGGCCGGGTCCTTCCCAGGGCAAAGTTCCGCCACCCCTGTA
CAGAATCGAGTGCGGCAGACTGGCCAGACTCCATACCCCTGTGCCATCGTTCTTCCTGGCCAGG
GTGATAGGGTTCCAGCCATGGGGAAGCAGCCCCGTCCTCTGTCTCCTTGCTGCAGTGGAGGCAG
AAGAGCTCAGGGCCCAAGCATCCTGGCAGGGTCCCAGCCCCCCACCCCTTGCCCCAGCCTGTGT
AGCTGTTCGTGCATGTGGATGCTGCATGTCTGGTCTGGGGCTTGGATGCTGCACTGCCCCGCTG
CCTGTCCCTTCTGGTAAAATAAATATCTGGTCATGCCCCCA

hide sequence

RefSeq Acc Id:

XM_021067498 ⟹ XP_020923157

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	45,102,206 - 45,120,452 (-)	NCBI

Sequence:

show sequence

GGGGGTGGCGGGATAGGCTGGGCGCGGCCGGCGGTGCGGGCCCGCTGCTGCTGTCCAGGTCTCG
GCGGCCCCCCGAGGGCCCTCCGTCCCTCCGGCGCCATGGGCAATTGCCACACGGTGGGGCCCAA
CGAGGCGCTGGTGGTTTCAGGGGGCTGTTGTGGTTCCGACTATAAACAGTATGTGTTTGGCGGC
TGGGCCTGGGCCTGGTGGTGTATCTCCGACACTCAGAGACTGTCTCTGGAGGTTATGACCATCC
TGTGTCGCTGTGAGAATATTGAGACGTCGGAGGGGGTCCCGCTATTCGTAACAGGGGTTGCACA
GGATTTCCCTAGAGATTATGACGTTGCAGCCCCGCTGCGAGGACGTAGAGACGGCCGAGGGGGT
AGCTTTAACTGTGACGGGTGTCGCCCAGGTGAAGATCATGACAGAGAAGGAGCTCCTGGCCGTG
GCCTGCGAGCAGTTCCTGGGCAAGAACGTGCAGGACATCAAGAATGTCGTCCTGCAGACCCTGG
AGGGGCACCTGCGCTCCATCCTCGGAACCCTGACGGTGGAGCAGATTTATCAGGACCGGGACCA
GTTTGCCAAGCTGGTGCGGGAGGTGGCAGCCCCTGACGTCGGCCGCATGGGCATCGAGATTCTC
AGCTTTACCATCAAGGACGTATATGACAAAGTGGACTATCTGAGCTCCCTGGGCAAGACGCAGA
CTGCGGTGGTGCAGAGAGATGCTGACATCGGGGTGGCCGAGGCCGAGCGAGACGCGGGCATCCG
GGAAGCCGAGTGCAAGAAGGAGATGCTGGACGTGAAGTTCATGGCAGACACGAAGATCGCCGAC
TCCAAGCGGGCCTTCGAGCTGCAGAAGTCGGCCTTCAGTGAGGAGGTCAACATCAAGACAGCTG
AGGCCCAGCTGGCCTATGAGCTCCAAGGGGCCCGCGAGCAGCAGAAGATCCGGCAGGAAGAGAT
CGAGATTGAGGTCGTGCAGCGCAAGAAGCAGATTGCGGTGGAGGCGCAGGAGATCCTGCGCACA
GACAAGGAGCTCATCGCCACGGTGCACCGCCCCGCCGAGGCTGAGGCCCACCGCATACAGCAGA
TCGCCGAGGGCGAGAAGGTGAAGCAGGTCCTCTTAGCACAGGCAGAGGCTGAGAAGATCCGCAA
AATTGGAGAGGCGGAGGCAGCGGTCATTGAAGCGATGGGCAAGGCAGAGGCTGAGCGGATGAAA
CTCAAGGCTGAGGCCTACCAGAAATACGGGGACGCGGCCAAGATGGCCTTGGTGCTGGAGGCCC
TGCCCCAGATCGCTGCCAAAATCTCCGCCCCACTGACCAAAGTCGATGAGATTGTGGTCCTCAG
CGGGGACAACAGCACGGTGACATCAGAAGTGAACCGACTGCTGGCCGAGCTGCCTGCCTCTGTG
CACGCCCTCACTGGCGTGGACCTTTCTAAGATACCACTGGTCAAGAAGGCCACCGGGGCGCAGG
TGTGAGGTCCCGAAGGCTCACGCCCTTCAGCAGCCACCGCCCCCCCCTCCAGCACCCGTTTTAA
TACCACAGGGACAACGGGAACGTTACTGACTCTGGTGCCTTATTTTGTAGGGACCAGAAGTGCT
GCGTGTTCAGGCCTCTGGCTGTCTTCCCTTCTCCCCTGTCTCTGTCTCCTTCCTCTTCTCCACC
CACACCCCCACTTTCACTGCCACATTCGTCTGGTTTGTCTCTTCCACCATCACCTCCCTGCACG
TCTCTTCCTTTGTCTGTCTGTCTTTTTCTCTCCCTCTCTCCTCCCTCCTTCTACACACGTCCTG
TAGTTTCAACTGAAGATGTCTATTACAATCACTGTCTGTCTGTCAGGGGTGGCCCTGCTGCCCC
TCAGAATCCTGGTGCCTTGAAGTTTTCTGTGCATCTGTCCGTTCCCCCTGTGGCCCAGGCCAGA
GCTTCAGCATGGGTGCAGGGGGTCTGGGTAGGGCGACCATCCTGCCCCGCTCCTGGCCTGGTCT
TCCCAGCCCTCACCCTGTCCCCAGGAAGCCCCCAGCCTCACCCACGCCGGCCCCTCTCAGCCCA
GGCAGCTATGGCTGCAGGCCCAGGGCCATTGCCCTTCTCTAACCCCTGCCCGGCCCCAGGCCTG
CTCTCATACCTTAGCTCTCTCCCCCCGCCCAGGGGCACAGAGGCAAGGCCTCCTGTGTATAGCA
GCTCCCTCAGTTTACTACTGCCTTAGGAGGCCCCTGCTTGTGCTCAGGGAAGTCCCCTTCCTGG
ACATGTCCCTACCAGGTGGAGGGGGGCTTGGTCCCAACTCTGCTACCCCTTTTCTGGGATCAGG
ATCTAGCCCTTCTGGGACTGGAAAGCGTGTAGACCCTCTTCCTGCTAGGGCTGTGCTGTCCTGG
GTTTTGGGCCGGGTCCTTCCCAGGGCAAAGTTCCGCCACCCCTGTACAGAATCGAGTGCGGCAG
ACTGGCCAGACTCCATACCCCTGTGCCATCGTTCTTCCTGGCCAGGGTGATAGGGTTCCAGCCA
TGGGGAAGCAGCCCCGTCCTCTGTCTCCTTGCTGCAGTGGAGGCAGAAGAGCTCAGGGCCCAAG
CATCCTGGCAGGGTCCCAGCCCCCCACCCCTTGCCCCAGCCTGTGTAGCTGTTCGTGCATGTGG
ATGCTGCATGTCTGGTCTGGGGCTTGGATGCTGCACTGCCCCGCTGCCTGTCCCTTCTGGTAAA
ATAAATATCTGGTCATGCCCCCA

hide sequence

RefSeq Acc Id:

XM_021067499 ⟹ XP_020923158

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	45,102,206 - 45,120,497 (-)	NCBI

Sequence:

show sequence

TCCGGCGAGGCTGCGGCCGCGGAGGGGCGCCGGCGGGCGGCCGCTGGGGGTGGCGGGATAGGCT
GGGCGCGGCCGGCGGTGCGGGCCCGCTGCTGCTGTCCAGGTCTCGGCGGCCCCCCGAGGGCCCT
CCGTCCCTCCGGCGCCATGGGCAATTGCCACACGGTGGGGCCCAACGAGGCGCTGGTGGTTTCA
GGATTTCCCTAGAGATTATGACGTTGCAGCCCCGCTGCGAGGACGTAGAGACGGCCGAGGGGGT
AGCTTTAACTGTGACGGGTGTCGCCCAGGTGAAGATCATGACAGAGAAGGAGCTCCTGGCCGTG
GCCTGCGAGCAGTTCCTGGGCAAGAACGTGCAGGACATCAAGAATGTCGTCCTGCAGACCCTGG
AGGGGCACCTGCGCTCCATCCTCGGAACCCTGACGGTGGAGCAGATTTATCAGGACCGGGACCA
GTTTGCCAAGCTGGTGCGGGAGGTGGCAGCCCCTGACGTCGGCCGCATGGGCATCGAGATTCTC
AGCTTTACCATCAAGGACGTATATGACAAAGTGGACTATCTGAGCTCCCTGGGCAAGACGCAGA
CTGCGGTGGTGCAGAGAGATGCTGACATCGGGGTGGCCGAGGCCGAGCGAGACGCGGGCATCCG
GGAAGCCGAGTGCAAGAAGGAGATGCTGGACGTGAAGTTCATGGCAGACACGAAGATCGCCGAC
TCCAAGCGGGCCTTCGAGCTGCAGAAGTCGGCCTTCAGTGAGGAGGTCAACATCAAGACAGCTG
AGGCCCAGCTGGCCTATGAGCTCCAAGGGGCCCGCGAGCAGCAGAAGATCCGGCAGGAAGAGAT
CGAGATTGAGGTCGTGCAGCGCAAGAAGCAGATTGCGGTGGAGGCGCAGGAGATCCTGCGCACA
GACAAGGAGCTCATCGCCACGGTGCACCGCCCCGCCGAGGCTGAGGCCCACCGCATACAGCAGA
TCGCCGAGGGCGAGAAGGTGAAGCAGGTCCTCTTAGCACAGGCAGAGGCTGAGAAGATCCGCAA
AATTGGAGAGGCGGAGGCAGCGGTCATTGAAGCGATGGGCAAGGCAGAGGCTGAGCGGATGAAA
CTCAAGGCTGAGGCCTACCAGAAATACGGGGACGCGGCCAAGATGGCCTTGGTGCTGGAGGCCC
TGCCCCAGATCGCTGCCAAAATCTCCGCCCCACTGACCAAAGTCGATGAGATTGTGGTCCTCAG
CGGGGACAACAGCACGGTGACATCAGAAGTGAACCGACTGCTGGCCGAGCTGCCTGCCTCTGTG
CACGCCCTCACTGGCGTGGACCTTTCTAAGATACCACTGGTCAAGAAGGCCACCGGGGCGCAGG
TGTGAGGTCCCGAAGGCTCACGCCCTTCAGCAGCCACCGCCCCCCCCTCCAGCACCCGTTTTAA
TACCACAGGGACAACGGGAACGTTACTGACTCTGGTGCCTTATTTTGTAGGGACCAGAAGTGCT
GCGTGTTCAGGCCTCTGGCTGTCTTCCCTTCTCCCCTGTCTCTGTCTCCTTCCTCTTCTCCACC
CACACCCCCACTTTCACTGCCACATTCGTCTGGTTTGTCTCTTCCACCATCACCTCCCTGCACG
TCTCTTCCTTTGTCTGTCTGTCTTTTTCTCTCCCTCTCTCCTCCCTCCTTCTACACACGTCCTG
TAGTTTCAACTGAAGATGTCTATTACAATCACTGTCTGTCTGTCAGGGGTGGCCCTGCTGCCCC
TCAGAATCCTGGTGCCTTGAAGTTTTCTGTGCATCTGTCCGTTCCCCCTGTGGCCCAGGCCAGA
GCTTCAGCATGGGTGCAGGGGGTCTGGGTAGGGCGACCATCCTGCCCCGCTCCTGGCCTGGTCT
TCCCAGCCCTCACCCTGTCCCCAGGAAGCCCCCAGCCTCACCCACGCCGGCCCCTCTCAGCCCA
GGCAGCTATGGCTGCAGGCCCAGGGCCATTGCCCTTCTCTAACCCCTGCCCGGCCCCAGGCCTG
CTCTCATACCTTAGCTCTCTCCCCCCGCCCAGGGGCACAGAGGCAAGGCCTCCTGTGTATAGCA
GCTCCCTCAGTTTACTACTGCCTTAGGAGGCCCCTGCTTGTGCTCAGGGAAGTCCCCTTCCTGG
ACATGTCCCTACCAGGTGGAGGGGGGCTTGGTCCCAACTCTGCTACCCCTTTTCTGGGATCAGG
ATCTAGCCCTTCTGGGACTGGAAAGCGTGTAGACCCTCTTCCTGCTAGGGCTGTGCTGTCCTGG
GTTTTGGGCCGGGTCCTTCCCAGGGCAAAGTTCCGCCACCCCTGTACAGAATCGAGTGCGGCAG
ACTGGCCAGACTCCATACCCCTGTGCCATCGTTCTTCCTGGCCAGGGTGATAGGGTTCCAGCCA
TGGGGAAGCAGCCCCGTCCTCTGTCTCCTTGCTGCAGTGGAGGCAGAAGAGCTCAGGGCCCAAG
CATCCTGGCAGGGTCCCAGCCCCCCACCCCTTGCCCCAGCCTGTGTAGCTGTTCGTGCATGTGG
ATGCTGCATGTCTGGTCTGGGGCTTGGATGCTGCACTGCCCCGCTGCCTGTCCCTTCTGGTAAA
ATAAATATCTGGTCATGCCCCCA

hide sequence

RefSeq Acc Id:

XM_021067500 ⟹ XP_020923159

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	45,102,206 - 45,120,485 (-)	NCBI

Sequence:

show sequence

GCGGCCGCGGAGGGGCGCCGGCGGGCGGCCGCTGGGGGTGGCGGGATAGGCTGGGCGCGGCCGG
CGGTGCGGGCCCGCTGCTGCTGTCCAGGTCTCGGCGGCCCCCCGAGGGCCCTCCGTCCCTCCGG
CGCCATGGGCAATTGCCACACGGTGGGGCCCAACGAGGCGCTGGTGGTTTCAGGGGGCTGTTGT
GGTTCCGACTATAAACAGTATGTGTTTGGCGGCTGGGCCTGGGCCTGGTGGTGTATCTCCGACA
CTCAGAGACTGTCTCTGGAGGTTATGACCATCCTGTGTCGCTGTGAGAATATTGAGACGTCGGA
GGGGGTCCCGCTATTCGTAACAGGGGTTGCACAGGATTTCCCTAGAGATTATGACGTTGCAGCC
CCGCTGCGAGGACGTAGAGACGGCCGAGGGGGTAGCTTTAACTGTGACGGGTGTCGCCCAGGCC
TCTGGCGAGGGGGTTGTTGGCTGAGTACCTTGGGAAAGAAAGACAAGAGGATGCCCACACTCGG
TGGCGGACCCCGGACCTGTCTCCTGCCCTTTCCCGGCTCTTTCCTACTCTGTCTGTGCCCCTGT
TGCTCACTCTCCTATTTGCAGAGACCTGCAGGTTAAAGGGGAGAGAGTGGGCTGGAGGGGTGGA
GGGAGCCACAGATGCCCAGGGGTGCGGCCATGGCAGGCCTGGGCGCCAGGAAGGTGCAATTCCT
TCGTATAAGAGCTCCCTGAGGTTTTCTCCCCACTGGAGGCCTCAGACAGACTCCATCTCCCAGC
CCCTAGGCCTCCGGTCTGGAAAAGGAGGGGAGGGCGCAGCCACCATCCCCCATGCCTCTGGGTC
TGGGGCCTCCGTCTGCCGCCCCCCAGCCTGACTCGCACCTCTGTGACCCCCGGCAGGTGAAGAT
CATGACAGAGAAGGAGCTCCTGGCCGTGGCCTGCGAGCAGTTCCTGGGCAAGAACGTGCAGGAC
ATCAAGAATGTCGTCCTGCAGACCCTGGAGGGGCACCTGCGCTCCATCCTCGGAACCCTGACGG
TGGAGCAGATTTATCAGGACCGGGACCAGTTTGCCAAGCTGGTGCGGGAGGTGGCAGCCCCTGA
CGTCGGCCGCATGGGCATCGAGATTCTCAGCTTTACCATCAAGGACGTATATGACAAAGTGGAC
TATCTGAGCTCCCTGGGCAAGACGCAGACTGCGGTGGTGCAGAGAGATGCTGACATCGGGGTGG
CCGAGGCCGAGCGAGACGCGGGCATCCGGGAAGCCGAGTGCAAGAAGGAGATGCTGGACGTGAA
GTTCATGGCAGACACGAAGATCGCCGACTCCAAGCGGGCCTTCGAGCTGCAGAAGTCGGCCTTC
AGTGAGGAGGTCAACATCAAGACAGCTGAGGCCCAGCTGGCCTATGAGCTCCAAGGGGCCCGCG
AGCAGCAGAAGATCCGGCAGGAAGAGATCGAGATTGAGGTCGTGCAGCGCAAGAAGCAGATTGC
GGTGGAGGCGCAGGAGATCCTGCGCACAGACAAGGAGCTCATCGCCACGGTGCACCGCCCCGCC
GAGGCTGAGGCCCACCGCATACAGCAGATCGCCGAGGGCGAGAAGGTGAAGCAGGTCCTCTTAG
CACAGGCAGAGGCTGAGAAGATCCGCAAAATTGGAGAGGCGGAGGCAGCGGTCATTGAAGCGAT
GGGCAAGGCAGAGGCTGAGCGGATGAAACTCAAGGCTGAGGCCTACCAGAAATACGGGGACGCG
GCCAAGATGGCCTTGGTGCTGGAGGCCCTGCCCCAGATCGCTGCCAAAATCTCCGCCCCACTGA
CCAAAGTCGATGAGATTGTGGTCCTCAGCGGGGACAACAGCACGGTGACATCAGAAGTGAACCG
ACTGCTGGCCGAGCTGCCTGCCTCTGTGCACGCCCTCACTGGCGTGGACCTTTCTAAGATACCA
CTGGTCAAGAAGGCCACCGGGGCGCAGGTGTGAGGTCCCGAAGGCTCACGCCCTTCAGCAGCCA
CCGCCCCCCCCTCCAGCACCCGTTTTAATACCACAGGGACAACGGGAACGTTACTGACTCTGGT
GCCTTATTTTGTAGGGACCAGAAGTGCTGCGTGTTCAGGCCTCTGGCTGTCTTCCCTTCTCCCC
TGTCTCTGTCTCCTTCCTCTTCTCCACCCACACCCCCACTTTCACTGCCACATTCGTCTGGTTT
GTCTCTTCCACCATCACCTCCCTGCACGTCTCTTCCTTTGTCTGTCTGTCTTTTTCTCTCCCTC
TCTCCTCCCTCCTTCTACACACGTCCTGTAGTTTCAACTGAAGATGTCTATTACAATCACTGTC
TGTCTGTCAGGGGTGGCCCTGCTGCCCCTCAGAATCCTGGTGCCTTGAAGTTTTCTGTGCATCT
GTCCGTTCCCCCTGTGGCCCAGGCCAGAGCTTCAGCATGGGTGCAGGGGGTCTGGGTAGGGCGA
CCATCCTGCCCCGCTCCTGGCCTGGTCTTCCCAGCCCTCACCCTGTCCCCAGGAAGCCCCCAGC
CTCACCCACGCCGGCCCCTCTCAGCCCAGGCAGCTATGGCTGCAGGCCCAGGGCCATTGCCCTT
CTCTAACCCCTGCCCGGCCCCAGGCCTGCTCTCATACCTTAGCTCTCTCCCCCCGCCCAGGGGC
ACAGAGGCAAGGCCTCCTGTGTATAGCAGCTCCCTCAGTTTACTACTGCCTTAGGAGGCCCCTG
CTTGTGCTCAGGGAAGTCCCCTTCCTGGACATGTCCCTACCAGGTGGAGGGGGGCTTGGTCCCA
ACTCTGCTACCCCTTTTCTGGGATCAGGATCTAGCCCTTCTGGGACTGGAAAGCGTGTAGACCC
TCTTCCTGCTAGGGCTGTGCTGTCCTGGGTTTTGGGCCGGGTCCTTCCCAGGGCAAAGTTCCGC
CACCCCTGTACAGAATCGAGTGCGGCAGACTGGCCAGACTCCATACCCCTGTGCCATCGTTCTT
CCTGGCCAGGGTGATAGGGTTCCAGCCATGGGGAAGCAGCCCCGTCCTCTGTCTCCTTGCTGCA
GTGGAGGCAGAAGAGCTCAGGGCCCAAGCATCCTGGCAGGGTCCCAGCCCCCCACCCCTTGCCC
CAGCCTGTGTAGCTGTTCGTGCATGTGGATGCTGCATGTCTGGTCTGGGGCTTGGATGCTGCAC
TGCCCCGCTGCCTGTCCCTTCTGGTAAAATAAATATCTGGTCATGCCCCCA

hide sequence

RefSeq Acc Id:

XM_021067501 ⟹ XP_020923160

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	45,102,206 - 45,120,474 (-)	NCBI

Sequence:

show sequence

GGGGCGCCGGCGGGCGGCCGCTGGGGGTGGCGGGATAGGCTGGGCGCGGCCGGCGGTGCGGGCC
CGCTGCTGCTGTCCAGGTCTCGGCGGCCCCCCGAGGGCCCTCCGTCCCTCCGGCGCCATGGGCA
ATTGCCACACGGTGGGGCCCAACGAGGCGCTGGTGGTTTCAGGGGGCTGTTGTGGTTCCGACTA
TAAACAGTATGTGTTTGGCGGCTGGGCCTGGGCCTGGTGGTGTATCTCCGACACTCAGAGGTGA
AGATCATGACAGAGAAGGAGCTCCTGGCCGTGGCCTGCGAGCAGTTCCTGGGCAAGAACGTGCA
GGACATCAAGAATGTCGTCCTGCAGACCCTGGAGGGGCACCTGCGCTCCATCCTCGGAACCCTG
ACGGTGGAGCAGATTTATCAGGACCGGGACCAGTTTGCCAAGCTGGTGCGGGAGGTGGCAGCCC
CTGACGTCGGCCGCATGGGCATCGAGATTCTCAGCTTTACCATCAAGGACGTATATGACAAAGT
GGACTATCTGAGCTCCCTGGGCAAGACGCAGACTGCGGTGGTGCAGAGAGATGCTGACATCGGG
GTGGCCGAGGCCGAGCGAGACGCGGGCATCCGGGAAGCCGAGTGCAAGAAGGAGATGCTGGACG
TGAAGTTCATGGCAGACACGAAGATCGCCGACTCCAAGCGGGCCTTCGAGCTGCAGAAGTCGGC
CTTCAGTGAGGAGGTCAACATCAAGACAGCTGAGGCCCAGCTGGCCTATGAGCTCCAAGGGGCC
CGCGAGCAGCAGAAGATCCGGCAGGAAGAGATCGAGATTGAGGTCGTGCAGCGCAAGAAGCAGA
TTGCGGTGGAGGCGCAGGAGATCCTGCGCACAGACAAGGAGCTCATCGCCACGGTGCACCGCCC
CGCCGAGGCTGAGGCCCACCGCATACAGCAGATCGCCGAGGGCGAGAAGGTGAAGCAGGTCCTC
TTAGCACAGGCAGAGGCTGAGAAGATCCGCAAAATTGGAGAGGCGGAGGCAGCGGTCATTGAAG
CGATGGGCAAGGCAGAGGCTGAGCGGATGAAACTCAAGGCTGAGGCCTACCAGAAATACGGGGA
CGCGGCCAAGATGGCCTTGGTGCTGGAGGCCCTGCCCCAGATCGCTGCCAAAATCTCCGCCCCA
CTGACCAAAGTCGATGAGATTGTGGTCCTCAGCGGGGACAACAGCACGGTGACATCAGAAGTGA
ACCGACTGCTGGCCGAGCTGCCTGCCTCTGTGCACGCCCTCACTGGCGTGGACCTTTCTAAGAT
ACCACTGGTCAAGAAGGCCACCGGGGCGCAGGTGTGAGGTCCCGAAGGCTCACGCCCTTCAGCA
GCCACCGCCCCCCCCTCCAGCACCCGTTTTAATACCACAGGGACAACGGGAACGTTACTGACTC
TGGTGCCTTATTTTGTAGGGACCAGAAGTGCTGCGTGTTCAGGCCTCTGGCTGTCTTCCCTTCT
CCCCTGTCTCTGTCTCCTTCCTCTTCTCCACCCACACCCCCACTTTCACTGCCACATTCGTCTG
GTTTGTCTCTTCCACCATCACCTCCCTGCACGTCTCTTCCTTTGTCTGTCTGTCTTTTTCTCTC
CCTCTCTCCTCCCTCCTTCTACACACGTCCTGTAGTTTCAACTGAAGATGTCTATTACAATCAC
TGTCTGTCTGTCAGGGGTGGCCCTGCTGCCCCTCAGAATCCTGGTGCCTTGAAGTTTTCTGTGC
ATCTGTCCGTTCCCCCTGTGGCCCAGGCCAGAGCTTCAGCATGGGTGCAGGGGGTCTGGGTAGG
GCGACCATCCTGCCCCGCTCCTGGCCTGGTCTTCCCAGCCCTCACCCTGTCCCCAGGAAGCCCC
CAGCCTCACCCACGCCGGCCCCTCTCAGCCCAGGCAGCTATGGCTGCAGGCCCAGGGCCATTGC
CCTTCTCTAACCCCTGCCCGGCCCCAGGCCTGCTCTCATACCTTAGCTCTCTCCCCCCGCCCAG
GGGCACAGAGGCAAGGCCTCCTGTGTATAGCAGCTCCCTCAGTTTACTACTGCCTTAGGAGGCC
CCTGCTTGTGCTCAGGGAAGTCCCCTTCCTGGACATGTCCCTACCAGGTGGAGGGGGGCTTGGT
CCCAACTCTGCTACCCCTTTTCTGGGATCAGGATCTAGCCCTTCTGGGACTGGAAAGCGTGTAG
ACCCTCTTCCTGCTAGGGCTGTGCTGTCCTGGGTTTTGGGCCGGGTCCTTCCCAGGGCAAAGTT
CCGCCACCCCTGTACAGAATCGAGTGCGGCAGACTGGCCAGACTCCATACCCCTGTGCCATCGT
TCTTCCTGGCCAGGGTGATAGGGTTCCAGCCATGGGGAAGCAGCCCCGTCCTCTGTCTCCTTGC
TGCAGTGGAGGCAGAAGAGCTCAGGGCCCAAGCATCCTGGCAGGGTCCCAGCCCCCCACCCCTT
GCCCCAGCCTGTGTAGCTGTTCGTGCATGTGGATGCTGCATGTCTGGTCTGGGGCTTGGATGCT
GCACTGCCCCGCTGCCTGTCCCTTCTGGTAAAATAAATATCTGGTCATGCCCCCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020923155	(Get FASTA)	NCBI Sequence Viewer
	XP_020923156	(Get FASTA)	NCBI Sequence Viewer
	XP_020923157	(Get FASTA)	NCBI Sequence Viewer
	XP_020923158	(Get FASTA)	NCBI Sequence Viewer
	XP_020923159	(Get FASTA)	NCBI Sequence Viewer
	XP_020923160	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000018836
	ENSSSCP00000018836.4
	ENSSSCP00000022920.3
	ENSSSCP00000044809
	ENSSSCP00000044809.2
	ENSSSCP00005042850.1
	ENSSSCP00005042909.1
	ENSSSCP00005042919.1
	ENSSSCP00015041818.1
	ENSSSCP00015042008.1
	ENSSSCP00025047446.1
	ENSSSCP00025047460.1
	ENSSSCP00030037107.1
	ENSSSCP00030037123.1
	ENSSSCP00030037140.1
	ENSSSCP00035044951.1
	ENSSSCP00035044985.1
	ENSSSCP00040021992.1
	ENSSSCP00040022065.1
	ENSSSCP00045038459.1
	ENSSSCP00045038554.1
	ENSSSCP00045038675.1
	ENSSSCP00050002262.1
	ENSSSCP00050002269.1
	ENSSSCP00055003826.1
	ENSSSCP00055003843.1
	ENSSSCP00055003858.1
	ENSSSCP00055003871.1
	ENSSSCP00060038281.1
	ENSSSCP00060038300.1
	ENSSSCP00060038305.1
	ENSSSCP00060038316.1
	ENSSSCP00060038331.1
	ENSSSCP00065026707.1
	ENSSSCP00065026765.1
	ENSSSCP00070019097.1
	ENSSSCP00070019107.1
	ENSSSCP00070019122.1
	ENSSSCP00070019136.1

RefSeq Acc Id:	XP_020923155 ⟸ XM_021067496
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1TPU4 (UniProtKB/TrEMBL), F1RNA6 (UniProtKB/TrEMBL), A0A480TGV2 (UniProtKB/TrEMBL), A0A8D0XHH0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVETAEG VALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRD QFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDADIGVAEAERDAGI REAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLAYELQGAREQQKIRQEE IEIEVVQRKKQIAVEAQEILRTDKELIATVHRPAEAEAHRIQQIAEGEKVKQVLLAQAEAEKIR KIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALVLEALPQIAAKISAPLTKVDEIVVL SGDNSTVTSEVNRLLAELPASVHALTGVDLSKIPLVKKATGAQV hide sequence

RefSeq Acc Id:	XP_020923158 ⟸ XM_021067499
- Peptide Label:	isoform X3
- UniProtKB:	A0A4X1TS12 (UniProtKB/TrEMBL), A0A8D0UCV6 (UniProtKB/TrEMBL), A0A8D1WDZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRS ILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQR DADIGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLAY ELQGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVHRPAEAEAHRIQQIAEGEK VKQVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALVLEALPQIAA KISAPLTKVDEIVVLSGDNSTVTSEVNRLLAELPASVHALTGVDLSKIPLVKKATGAQV hide sequence

RefSeq Acc Id:	XP_020923156 ⟸ XM_021067497
- Peptide Label:	isoform X2
- UniProtKB:	A0A287ALN0 (UniProtKB/TrEMBL), A0A4X1TPV3 (UniProtKB/TrEMBL), I3LFS8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRLSLEVMTILCRCENIETSEG VPLFVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRD QFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDADIGVAEAERDAGI REAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLAYELQGAREQQKIRQEE IEIEVVQRKKQIAVEAQEILRTDKELIATVHRPAEAEAHRIQQIAEGEKVKQVLLAQAEAEKIR KIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALVLEALPQIAAKISAPLTKVDEIVVL SGDNSTVTSEVNRLLAELPASVHALTGVDLSKIPLVKKATGAQV hide sequence

RefSeq Acc Id:	XP_020923159 ⟸ XM_021067500
- Peptide Label:	isoform X4
- UniProtKB:	A0A8D0Q5T4 (UniProtKB/TrEMBL), I3LFS8 (UniProtKB/TrEMBL), A0A8D1EGK3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLGLGPPSAAPQPDSHLCDPRQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSIL GTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDA DIGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLAYEL QGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVHRPAEAEAHRIQQIAEGEKVK QVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALVLEALPQIAAKI SAPLTKVDEIVVLSGDNSTVTSEVNRLLAELPASVHALTGVDLSKIPLVKKATGAQV hide sequence

RefSeq Acc Id:	XP_020923160 ⟸ XM_021067501
- Peptide Label:	isoform X5
- UniProtKB:	A0A4X1TS22 (UniProtKB/TrEMBL), I3LFS8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPD VGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDADIGVAEAERDAGIREAECKKEMLDVK FMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLAYELQGAREQQKIRQEEIEIEVVQRKKQIA VEAQEILRTDKELIATVHRPAEAEAHRIQQIAEGEKVKQVLLAQAEAEKIRKIGEAEAAVIEAM GKAEAERMKLKAEAYQKYGDAAKMALVLEALPQIAAKISAPLTKVDEIVVLSGDNSTVTSEVNR LLAELPASVHALTGVDLSKIPLVKKATGAQV hide sequence

RefSeq Acc Id:	XP_020923157 ⟸ XM_021067498
- Peptide Label:	isoform X3
- UniProtKB:	A0A4X1TS12 (UniProtKB/TrEMBL), A0A8D0UCV6 (UniProtKB/TrEMBL), A0A8D1WDZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRS ILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQR DADIGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLAY ELQGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVHRPAEAEAHRIQQIAEGEK VKQVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALVLEALPQIAA KISAPLTKVDEIVVLSGDNSTVTSEVNRLLAELPASVHALTGVDLSKIPLVKKATGAQV hide sequence

RefSeq Acc Id:

ENSSSCP00000018836 ⟸ ENSSSCT00000019349

RefSeq Acc Id:

ENSSSCP00000022920 ⟸ ENSSSCT00000029155

RefSeq Acc Id:

ENSSSCP00000044809 ⟸ ENSSSCT00000063241

Protein Domains

Band

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000017777	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005042926	UniProtKB/TrEMBL
	ENSSSCG00015074336	UniProtKB/TrEMBL
	ENSSSCG00025076476	UniProtKB/TrEMBL
	ENSSSCG00030058001	UniProtKB/TrEMBL
	ENSSSCG00035076967	UniProtKB/TrEMBL
	ENSSSCG00040039524	UniProtKB/TrEMBL
	ENSSSCG00045032303	UniProtKB/TrEMBL
	ENSSSCG00050004005	UniProtKB/TrEMBL
	ENSSSCG00055002591	UniProtKB/TrEMBL
	ENSSSCG00060064803	UniProtKB/TrEMBL
	ENSSSCG00065044966	UniProtKB/TrEMBL
	ENSSSCG00070011849	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000019349	ENTREZGENE
	ENSSSCT00000019349.4	UniProtKB/TrEMBL
	ENSSSCT00000029155.4	UniProtKB/TrEMBL
	ENSSSCT00000063241	ENTREZGENE
	ENSSSCT00000063241.3	UniProtKB/TrEMBL
	ENSSSCT00005068895.1	UniProtKB/TrEMBL
	ENSSSCT00005068999.1	UniProtKB/TrEMBL
	ENSSSCT00005069016.1	UniProtKB/TrEMBL
	ENSSSCT00015100989.1	UniProtKB/TrEMBL
	ENSSSCT00015101415.1	UniProtKB/TrEMBL
	ENSSSCT00025105938.1	UniProtKB/TrEMBL
	ENSSSCT00025105960.1	UniProtKB/TrEMBL
	ENSSSCT00030080915.1	UniProtKB/TrEMBL
	ENSSSCT00030080950.1	UniProtKB/TrEMBL
	ENSSSCT00030080991.1	UniProtKB/TrEMBL
	ENSSSCT00035104804.1	UniProtKB/TrEMBL
	ENSSSCT00035104869.1	UniProtKB/TrEMBL
	ENSSSCT00040052898.1	UniProtKB/TrEMBL
	ENSSSCT00040053048.1	UniProtKB/TrEMBL
	ENSSSCT00045055161.1	UniProtKB/TrEMBL
	ENSSSCT00045055295.1	UniProtKB/TrEMBL
	ENSSSCT00045055461.1	UniProtKB/TrEMBL
	ENSSSCT00050005438.1	UniProtKB/TrEMBL
	ENSSSCT00050005447.1	UniProtKB/TrEMBL
	ENSSSCT00055004963.1	UniProtKB/TrEMBL
	ENSSSCT00055004981.1	UniProtKB/TrEMBL
	ENSSSCT00055004998.1	UniProtKB/TrEMBL
	ENSSSCT00055005014.1	UniProtKB/TrEMBL
	ENSSSCT00060088445.1	UniProtKB/TrEMBL
	ENSSSCT00060088491.1	UniProtKB/TrEMBL
	ENSSSCT00060088498.1	UniProtKB/TrEMBL
	ENSSSCT00060088523.1	UniProtKB/TrEMBL
	ENSSSCT00060088564.1	UniProtKB/TrEMBL
	ENSSSCT00065061613.1	UniProtKB/TrEMBL
	ENSSSCT00065061764.1	UniProtKB/TrEMBL
	ENSSSCT00070023096.1	UniProtKB/TrEMBL
	ENSSSCT00070023106.1	UniProtKB/TrEMBL
	ENSSSCT00070023125.1	UniProtKB/TrEMBL
	ENSSSCT00070023141.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.479.30	UniProtKB/TrEMBL
InterPro	Band_7	UniProtKB/TrEMBL
	Band_7/SPFH_dom_sf	UniProtKB/TrEMBL
	Flotillin_C	UniProtKB/TrEMBL
	Flotillin_fam	UniProtKB/TrEMBL
NCBI Gene	FLOT2	ENTREZGENE
PANTHER	FLOTILLIN-1-RELATED	UniProtKB/TrEMBL
	PTHR13806	UniProtKB/TrEMBL
Pfam	Band_7	UniProtKB/TrEMBL
	Flot	UniProtKB/TrEMBL
SMART	PHB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF117892	UniProtKB/TrEMBL
UniProt	A0A287ALN0	ENTREZGENE, UniProtKB/TrEMBL
	A0A480TGV2	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1TPU4	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1TPV3	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1TS12	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1TS22	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0Q5T4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0UCV6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0XHH0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1EGK3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1TTV3_PIG	UniProtKB/TrEMBL
	A0A8D1WDZ7	ENTREZGENE, UniProtKB/TrEMBL
	F1RNA6	ENTREZGENE
	I3LFS8	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	F1RNA6	UniProtKB/TrEMBL
VGNC ID	VGNC:88159	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar