Tpm1 (tropomyosin 1) - Rat Genome Database

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Gene: Tpm1 (tropomyosin 1) Rattus norvegicus
Analyze
Symbol: Tpm1
Name: tropomyosin 1
RGD ID: 3898
Description: Enables actin filament binding activity; disordered domain specific binding activity; and protein dimerization activity. Involved in several processes, including muscle filament sliding; regulation of actin filament organization; and ruffle organization. Located in actin cytoskeleton. Part of protein-containing complex. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Y; familial hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 3. Orthologous to human TPM1 (tropomyosin 1); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: alpha; Alpha-tm; hepatoma alpha tropomyosin; smooth muscle alpha-tropomyosin; striated muscle alpha-tropomyosin; Tma2; Tmsa; Tropomyosin 1 (alpha); tropomyosin 1 alpha chain; tropomyosin 1, alpha; tropomyosin 3; tropomyosin 3 alpha; tropomyosin 3, alpha; tropomyosin alpha-1 chain; tropomyosin-alpha
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Tpm1_v8   Tpm1_v4   Tpm1_v7   Tpm1_v5   Tpm1_v3   Tpm1_v2   Tpm1_v6   Tpm1_v9   Tpm1_v1  
Is Marker For: QTLs:   Inf1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8876,516,654 - 76,543,661 (-)NCBIGRCr8
mRatBN7.2867,635,479 - 67,662,330 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl867,635,479 - 67,662,802 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx873,167,462 - 73,194,230 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0871,440,391 - 71,467,160 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0869,277,200 - 69,303,963 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0872,814,737 - 72,841,496 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl872,814,740 - 72,842,228 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0877,147,580 - 77,174,392 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4871,331,304 - 71,358,063 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1871,355,970 - 71,371,766 (-)NCBI
Celera874,042,032 - 74,068,764 (+)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
Allylamine  (EXP)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bexarotene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (EXP)
bortezomib  (ISO)
bromobenzene  (EXP)
buspirone  (EXP)
butanal  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cantharidin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium atom  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
clothianidin  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP,ISO)
Deoxycorticosterone acetate  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
dihydroartemisinin  (ISO)
dioxygen  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
entinostat  (ISO)
ethanol  (ISO)
finasteride  (EXP)
fluoxetine  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fumonisin B1  (ISO)
furan  (EXP)
genistein  (ISO)
glycidyl methacrylate  (ISO)
hydrogen peroxide  (EXP,ISO)
indole-3-methanol  (EXP)
indometacin  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
lithium atom  (EXP)
lithium chloride  (ISO)
lithium hydride  (EXP)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
microcystin-LR  (EXP,ISO)
mitoxantrone  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-acetyl-L-cysteine  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (EXP)
N-nitrosomorpholine  (EXP)
naphthalene  (ISO)
naphthalenes  (EXP)
nefazodone  (EXP)
nickel atom  (ISO)
nicotinic acid  (ISO)
nimesulide  (EXP)
orphenadrine  (EXP)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (EXP)
pentanal  (ISO)
perfluorododecanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
potassium chloride  (EXP)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (EXP,ISO)
rac-lactic acid  (ISO)
raloxifene  (EXP,ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
sarin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP,ISO)
triadimefon  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
troglitazone  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (IDA,ISO)
actin filament  (IBA,IEA)
bleb  (IEA,ISO)
cytoplasm  (ISO)
cytosol  (IEA,ISO)
myofibril  (ISO)
protein-containing complex  (IDA)
ruffle membrane  (IEA,ISO)
stress fiber  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
dilated cardiomyopathy pathway  (IEA)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
hypertrophic cardiomyopathy pathway  (IEA)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Multiple combinations of alternatively spliced exons in rat tropomyosin-alpha gene mRNA: evidence for 20 new isoforms in adult tissues and cultured cells. Cooley BC and Bergtrom G, Arch Biochem Biophys 2001 Jun 1;390(1):71-7.
2. Cloning and characterization of cDNA sequences corresponding to myosin light chains 1, 2, and 3, troponin-C, troponin-T, alpha-tropomyosin, and alpha-actin. Garfinkel LI, etal., J Biol Chem 1982 Sep 25;257(18):11078-86.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Specificity of dimer formation in tropomyosins: influence of alternatively spliced exons on homodimer and heterodimer assembly. Gimona M, etal., Proc Natl Acad Sci U S A. 1995 Oct 10;92(21):9776-80.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Four fibroblast tropomyosin isoforms are expressed from the rat alpha-tropomyosin gene via alternative RNA splicing and the use of two promoters. Goodwin LO, etal., J Biol Chem 1991 May 5;266(13):8408-15.
7. Structure and tropomyosin binding properties of the N-terminal capping domain of tropomodulin 1. Greenfield NJ, etal., Biophys J. 2005 Jan;88(1):372-83. Epub 2004 Oct 8.
8. A splicing silencer that regulates smooth muscle specific alternative splicing is active in multiple cell types. Gromak N and Smith CW, Nucleic Acids Res 2002 Aug 15;30(16):3548-57.
9. Importance of internal regions and the overall length of tropomyosin for actin binding and regulatory function. Hitchcock-DeGregori SE, etal., Biochemistry. 2001 Feb 20;40(7):2104-12.
10. Genetics of hypertrophic cardiomyopathy in eastern Finland: few founder mutations with benign or intermediary phenotypes. Jaaskelainen P, etal., Ann Med. 2004;36(1):23-32.
11. In vitro formation and characterization of the skeletal muscle a·ß tropomyosin heterodimers. Kalyva A, etal., Biochemistry. 2012 Aug 14;51(32):6388-99. Epub 2012 Aug 3.
12. Hypertrophic cardiomyopathy caused by a novel alpha-tropomyosin mutation (V95A) is associated with mild cardiac phenotype, abnormal calcium binding to troponin, abnormal myosin cycling, and poor prognosis. Karibe A, etal., Circulation 2001 Jan 2;103(1):65-71.
13. Structural requirements of tropomodulin for tropomyosin binding and actin filament capping. Kostyukova AS, etal., Biochemistry. 2005 Mar 29;44(12):4905-10.
14. Thermal unfolding of smooth muscle and nonmuscle tropomyosin alpha-homodimers with alternatively spliced exons. Kremneva E, etal., FEBS J. 2006 Feb;273(3):588-600.
15. Three novel brain tropomyosin isoforms are expressed from the rat alpha-tropomyosin gene through the use of alternative promoters and alternative RNA processing. Lees-Miller JP, etal., Mol Cell Biol 1990 Apr;10(4):1729-42.
16. Synchronous progression of calcium transient-dependent beating and sarcomere destruction in apoptotic adult cardiomyocytes. Maruyama R, etal., Am J Physiol Heart Circ Physiol. 2006 Apr;290(4):H1493-502. Epub 2005 Nov 11.
17. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
18. Identification of a multiprotein "motor" complex binding to water channel aquaporin-2. Noda Y, etal., Biochem Biophys Res Commun. 2005 May 20;330(4):1041-7.
19. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
20. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
21. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
22. Medium perfusion enables engineering of compact and contractile cardiac tissue. Radisic M, etal., Am J Physiol Heart Circ Physiol. 2004 Feb;286(2):H507-16. Epub 2003 Oct 9.
23. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
24. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
25. Alpha-tropomyosin gene organization. Alternative splicing of duplicated isotype-specific exons accounts for the production of smooth and striated muscle isoforms. Ruiz-Opazo N and Nadal-Ginard B, J Biol Chem 1987 Apr 5;262(10):4755-65.
26. Local destabilization of the tropomyosin coiled coil gives the molecular flexibility required for actin binding. Singh A and Hitchcock-DeGregori SE, Biochemistry. 2003 Dec 9;42(48):14114-21.
27. Effect of actin C-terminal modification on tropomyosin isoforms binding and thin filament regulation. Skorzewski R, etal., Biochim Biophys Acta. 2009 Feb;1794(2):237-43. doi: 10.1016/j.bbapap.2008.10.014. Epub 2008 Nov 11.
28. Silencing of the Tropomyosin-1 gene by DNA methylation alters tumor suppressor function of TGF-beta. Varga AE, etal., Oncogene. 2005 Jul 28;24(32):5043-52.
29. The rat alpha-tropomyosin gene generates a minimum of six different mRNAs coding for striated, smooth, and nonmuscle isoforms by alternative splicing. Wieczorek DF, etal., Mol Cell Biol 1988 Feb;8(2):679-94.
30. Role of high-molecular weight tropomyosins in TGF-beta-mediated control of cell motility. Zheng Q, etal., Int J Cancer. 2008 Jan 1;122(1):78-90.
Additional References at PubMed
PMID:3838802   PMID:8889548   PMID:9400381   PMID:9440710   PMID:10580117   PMID:10602480   PMID:11273725   PMID:11356630   PMID:12477932   PMID:12686598   PMID:12947022   PMID:16365313  
PMID:16765662   PMID:16980359   PMID:16999976   PMID:17556658   PMID:17987659   PMID:18052203   PMID:18985725   PMID:19037011   PMID:19182904   PMID:20161772   PMID:21817107   PMID:22041451  
PMID:22206666   PMID:22364878   PMID:22433308   PMID:22871113   PMID:23091026   PMID:23420843   PMID:23609439   PMID:24362038   PMID:25002582   PMID:25369766   PMID:28002632   PMID:30361391  
PMID:30462572   PMID:35352799   PMID:37037889  


Genomics

Comparative Map Data
Tpm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8876,516,654 - 76,543,661 (-)NCBIGRCr8
mRatBN7.2867,635,479 - 67,662,330 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl867,635,479 - 67,662,802 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx873,167,462 - 73,194,230 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0871,440,391 - 71,467,160 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0869,277,200 - 69,303,963 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0872,814,737 - 72,841,496 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl872,814,740 - 72,842,228 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0877,147,580 - 77,174,392 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4871,331,304 - 71,358,063 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1871,355,970 - 71,371,766 (-)NCBI
Celera874,042,032 - 74,068,764 (+)NCBICelera
Cytogenetic Map8q24NCBI
TPM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381563,042,747 - 63,071,915 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1563,042,620 - 63,071,915 (+)EnsemblGRCh38hg38GRCh38
GRCh371563,334,946 - 63,364,114 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361561,121,891 - 61,151,167 (+)NCBINCBI36Build 36hg18NCBI36
Build 341561,121,940 - 61,145,344NCBI
Celera1540,214,544 - 40,243,825 (+)NCBICelera
Cytogenetic Map15q22.2NCBI
HuRef1540,157,801 - 40,187,095 (+)NCBIHuRef
CHM1_11563,453,982 - 63,483,261 (+)NCBICHM1_1
T2T-CHM13v2.01560,846,575 - 60,875,760 (+)NCBIT2T-CHM13v2.0
Tpm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39966,929,872 - 66,956,954 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl966,929,872 - 66,956,688 (-)EnsemblGRCm39 Ensembl
GRCm38967,022,590 - 67,049,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl967,022,590 - 67,049,406 (-)EnsemblGRCm38mm10GRCm38
MGSCv37966,870,400 - 66,897,020 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36966,821,737 - 66,848,357 (-)NCBIMGSCv36mm8
Celera964,256,822 - 64,283,903 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map936.27NCBI
Tpm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545012,194,755 - 12,224,011 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545012,197,241 - 12,223,372 (-)NCBIChiLan1.0ChiLan1.0
TPM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21652,290,543 - 52,319,901 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11556,466,786 - 56,496,094 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01541,989,239 - 42,018,520 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11560,286,587 - 60,315,530 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1560,286,587 - 60,315,530 (+)Ensemblpanpan1.1panPan2
TPM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13027,636,407 - 27,664,907 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3027,636,283 - 27,664,442 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3027,555,422 - 27,583,889 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03027,808,901 - 27,837,409 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3027,808,632 - 27,883,602 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13027,745,620 - 27,774,085 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03027,807,813 - 27,836,317 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03028,051,643 - 28,080,112 (+)NCBIUU_Cfam_GSD_1.0
Tpm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640105,795,687 - 105,822,712 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647123,643,613 - 23,670,775 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647123,643,645 - 23,670,775 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1108,986,986 - 109,020,035 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11108,986,981 - 109,016,090 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21120,211,175 - 120,240,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TPM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12620,458,287 - 20,487,387 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2620,466,037 - 20,487,135 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048120,912,655 - 120,941,683 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tpm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247819,414,500 - 9,442,544 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247819,414,500 - 9,442,357 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tpm1
55 total Variants
miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir21rno-miR-21-5pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830
Mir293rno-miR-293-5pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830
Mir338rno-miR-338-3pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830

Predicted Target Of
Summary Value
Count of predictions:1022
Count of miRNA genes:301
Interacting mature miRNAs:381
Transcripts:ENSRNOT00000024493, ENSRNOT00000024575, ENSRNOT00000024617, ENSRNOT00000040808, ENSRNOT00000048044, ENSRNOT00000057641
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)84186701070386132Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)85423764485365202Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)85423764485365202Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat

Markers in Region
D8Mgh5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2867,648,874 - 67,649,003 (+)MAPPERmRatBN7.2
Rnor_6.0872,828,131 - 72,828,259NCBIRnor6.0
Rnor_5.0877,160,974 - 77,161,102UniSTSRnor5.0
RGSC_v3.4871,344,697 - 71,344,826RGDRGSC3.4
RGSC_v3.4871,344,698 - 71,344,826UniSTSRGSC3.4
RGSC_v3.1871,363,751 - 71,363,880RGD
Celera874,055,242 - 74,055,370UniSTS
RH 3.4 Map8855.7UniSTS
RH 3.4 Map8855.7RGD
RH 2.0 Map8618.1RGD
Cytogenetic Map8q24UniSTS
RH132196  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2867,636,924 - 67,637,144 (+)MAPPERmRatBN7.2
Rnor_6.0872,816,182 - 72,816,401NCBIRnor6.0
Rnor_5.0877,149,025 - 77,149,244UniSTSRnor5.0
RGSC_v3.4871,332,749 - 71,332,968UniSTSRGSC3.4
Celera874,067,100 - 74,067,319UniSTS
RH 3.4 Map8859.2UniSTS
Cytogenetic Map8q24UniSTS
RH144195  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2867,660,484 - 67,660,714 (+)MAPPERmRatBN7.2
Rnor_6.0872,839,737 - 72,839,966NCBIRnor6.0
Rnor_5.0877,172,580 - 77,172,809UniSTSRnor5.0
RGSC_v3.4871,356,304 - 71,356,533UniSTSRGSC3.4
Celera874,043,534 - 74,043,763UniSTS
RH 3.4 Map8858.5UniSTS
Cytogenetic Map8q24UniSTS
RH140166  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2867,650,436 - 67,650,622 (+)MAPPERmRatBN7.2
Rnor_6.0872,829,693 - 72,829,878NCBIRnor6.0
Rnor_5.0877,162,536 - 77,162,721UniSTSRnor5.0
RGSC_v3.4871,346,260 - 71,346,445UniSTSRGSC3.4
Celera874,053,623 - 74,053,808UniSTS
RH 3.4 Map8859.3UniSTS
Cytogenetic Map8q24UniSTS
RH134075  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2867,641,994 - 67,642,182 (+)MAPPERmRatBN7.2
Rnor_6.0872,821,251 - 72,821,438NCBIRnor6.0
Rnor_5.0877,154,094 - 77,154,281UniSTSRnor5.0
RGSC_v3.4871,337,818 - 71,338,005UniSTSRGSC3.4
Celera874,062,063 - 74,062,250UniSTS
RH 3.4 Map8851.8UniSTS
Cytogenetic Map8q24UniSTS
RH136834  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2867,635,698 - 67,635,900 (+)MAPPERmRatBN7.2
Rnor_6.0872,814,956 - 72,815,157NCBIRnor6.0
Rnor_5.0877,147,799 - 77,148,000UniSTSRnor5.0
RGSC_v3.4871,331,523 - 71,331,724UniSTSRGSC3.4
Celera874,068,344 - 74,068,545UniSTS
RH 3.4 Map8849.9UniSTS
Cytogenetic Map8q24UniSTS
RH138229  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2867,648,816 - 67,649,005 (+)MAPPERmRatBN7.2
Rnor_6.0872,828,073 - 72,828,261NCBIRnor6.0
Rnor_5.0877,160,916 - 77,161,104UniSTSRnor5.0
RGSC_v3.4871,344,640 - 71,344,828UniSTSRGSC3.4
Celera874,055,240 - 74,055,428UniSTS
RH 3.4 Map8857.7UniSTS
Cytogenetic Map8q24UniSTS
RH140171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2867,656,239 - 67,656,427 (+)MAPPERmRatBN7.2
Rnor_6.0872,835,495 - 72,835,682NCBIRnor6.0
Rnor_5.0877,168,338 - 77,168,525UniSTSRnor5.0
RGSC_v3.4871,352,062 - 71,352,249UniSTSRGSC3.4
Celera874,047,819 - 74,048,006UniSTS
RH 3.4 Map8852.0UniSTS
Cytogenetic Map8q24UniSTS
BE117331  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2867,643,729 - 67,643,887 (+)MAPPERmRatBN7.2
Rnor_6.0872,822,986 - 72,823,143NCBIRnor6.0
Rnor_5.0877,155,829 - 77,155,986UniSTSRnor5.0
RGSC_v3.4871,339,553 - 71,339,710UniSTSRGSC3.4
Celera874,060,358 - 74,060,515UniSTS
RH 3.4 Map8856.8UniSTS
Cytogenetic Map8q24UniSTS
BE118313  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2867,643,141 - 67,643,292 (+)MAPPERmRatBN7.2
Rnor_6.0872,822,398 - 72,822,548NCBIRnor6.0
Rnor_5.0877,155,241 - 77,155,391UniSTSRnor5.0
RGSC_v3.4871,338,965 - 71,339,115UniSTSRGSC3.4
Celera874,060,953 - 74,061,103UniSTS
RH 3.4 Map8856.9UniSTS
Cytogenetic Map8q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 41 8 11 8
Medium 3 2 57 41 19 41 74 35 41 11
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001034068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001034069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001034070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001034071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001034072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001034073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001034074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001034075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001301736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_019131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA899493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF370889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF372215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF372216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF372217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH000854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI603512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE118215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU670983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB585296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB787774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF108680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK483405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO562261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ074026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M34134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M34135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M34136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X02411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X02412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000024493   ⟹   ENSRNOP00000024493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl867,641,021 - 67,662,244 (-)Ensembl
Rnor_6.0 Ensembl872,820,277 - 72,841,496 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000024575   ⟹   ENSRNOP00000024575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl867,635,479 - 67,662,216 (-)Ensembl
Rnor_6.0 Ensembl872,816,319 - 72,841,496 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000024617   ⟹   ENSRNOP00000024617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl867,635,482 - 67,656,904 (-)Ensembl
Rnor_6.0 Ensembl872,814,740 - 72,836,159 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000040808   ⟹   ENSRNOP00000047134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl867,635,481 - 67,662,244 (-)Ensembl
Rnor_6.0 Ensembl872,814,740 - 72,841,496 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000048044   ⟹   ENSRNOP00000048499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl867,641,011 - 67,662,297 (-)Ensembl
Rnor_6.0 Ensembl872,820,276 - 72,841,496 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000057641   ⟹   ENSRNOP00000054446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl867,635,479 - 67,662,216 (-)Ensembl
Rnor_6.0 Ensembl872,814,740 - 72,841,496 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085894   ⟹   ENSRNOP00000070151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl867,635,479 - 67,662,219 (-)Ensembl
Rnor_6.0 Ensembl872,814,740 - 72,841,496 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090288   ⟹   ENSRNOP00000074187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl867,641,990 - 67,662,802 (-)Ensembl
Rnor_6.0 Ensembl872,815,356 - 72,842,228 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099012   ⟹   ENSRNOP00000085868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl867,642,088 - 67,662,210 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112475   ⟹   ENSRNOP00000084613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl867,635,488 - 67,662,215 (-)Ensembl
RefSeq Acc Id: NM_001034068   ⟹   NP_001029240
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,522,193 - 76,543,415 (-)NCBI
mRatBN7.2867,641,020 - 67,662,244 (-)NCBI
Rnor_6.0872,820,276 - 72,841,496 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
RGSC_v3.4871,331,304 - 71,358,063 (-)RGD
Celera874,042,032 - 74,063,225 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001034069   ⟹   NP_001029241
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,543,415 (-)NCBI
mRatBN7.2867,635,479 - 67,662,244 (-)NCBI
Rnor_6.0872,814,737 - 72,841,496 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
RGSC_v3.4871,331,304 - 71,358,063 (-)RGD
Celera874,042,032 - 74,068,764 (+)RGD
Sequence:
RefSeq Acc Id: NM_001034070   ⟹   NP_001029242
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,543,415 (-)NCBI
mRatBN7.2867,635,479 - 67,662,244 (-)NCBI
Rnor_6.0872,814,737 - 72,841,496 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
RGSC_v3.4871,331,304 - 71,358,063 (-)RGD
Celera874,042,032 - 74,068,764 (+)RGD
Sequence:
RefSeq Acc Id: NM_001034071   ⟹   NP_001029243
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,543,415 (-)NCBI
mRatBN7.2867,635,479 - 67,662,244 (-)NCBI
Rnor_6.0872,814,737 - 72,841,496 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
RGSC_v3.4871,331,304 - 71,358,063 (-)RGD
Celera874,042,032 - 74,068,764 (+)RGD
Sequence:
RefSeq Acc Id: NM_001034072   ⟹   NP_001029244
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,518,229 - 76,543,415 (-)NCBI
mRatBN7.2867,637,055 - 67,662,244 (-)NCBI
Rnor_6.0872,816,312 - 72,841,496 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
RGSC_v3.4871,331,304 - 71,358,063 (-)RGD
Celera874,042,032 - 74,067,189 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001034073   ⟹   NP_001029245
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,538,076 (-)NCBI
mRatBN7.2867,635,479 - 67,656,904 (-)NCBI
Rnor_6.0872,814,737 - 72,836,159 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
RGSC_v3.4871,331,304 - 71,358,063 (-)RGD
Celera874,047,342 - 74,068,764 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001034074   ⟹   NP_001029246
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,538,076 (-)NCBI
mRatBN7.2867,635,479 - 67,656,904 (-)NCBI
Rnor_6.0872,814,737 - 72,836,159 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
RGSC_v3.4871,331,304 - 71,358,063 (-)RGD
Celera874,047,342 - 74,068,764 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001034075   ⟹   NP_001029247
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,522,193 - 76,538,076 (-)NCBI
mRatBN7.2867,641,020 - 67,656,904 (-)NCBI
Rnor_6.0872,820,276 - 72,836,159 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
RGSC_v3.4871,331,304 - 71,358,063 (-)RGD
Celera874,047,342 - 74,063,225 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001301336   ⟹   NP_001288265
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,522,193 - 76,543,415 (-)NCBI
mRatBN7.2867,641,020 - 67,662,244 (-)NCBI
Rnor_6.0872,820,276 - 72,841,496 (-)NCBI
Celera874,042,032 - 74,063,225 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001301342   ⟹   NP_001288271
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,522,193 - 76,543,415 (-)NCBI
mRatBN7.2867,641,020 - 67,662,244 (-)NCBI
Rnor_6.0872,820,276 - 72,841,496 (-)NCBI
Celera874,042,032 - 74,063,225 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001301736   ⟹   NP_001288665
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,518,229 - 76,538,076 (-)NCBI
mRatBN7.2867,637,055 - 67,656,904 (-)NCBI
Rnor_6.0872,816,312 - 72,836,159 (-)NCBI
Celera874,047,342 - 74,067,189 (+)NCBI
Sequence:
RefSeq Acc Id: NM_019131   ⟹   NP_062004
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,522,193 - 76,538,076 (-)NCBI
mRatBN7.2867,641,020 - 67,656,904 (-)NCBI
Rnor_6.0872,820,276 - 72,836,159 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
RGSC_v3.4871,331,304 - 71,358,063 (-)RGD
Celera874,047,342 - 74,063,225 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243390   ⟹   XP_006243452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,543,584 (-)NCBI
mRatBN7.2867,635,479 - 67,662,323 (-)NCBI
Rnor_6.0872,814,737 - 72,841,495 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243393   ⟹   XP_006243455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,523,144 - 76,538,173 (-)NCBI
mRatBN7.2867,642,777 - 67,656,902 (-)NCBI
Rnor_6.0872,822,033 - 72,836,178 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243395   ⟹   XP_006243457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,538,173 (-)NCBI
mRatBN7.2867,636,722 - 67,656,909 (-)NCBI
Rnor_6.0872,815,976 - 72,836,190 (-)NCBI
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766207   ⟹   XP_008764429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,522,275 - 76,543,661 (-)NCBI
mRatBN7.2867,641,020 - 67,662,330 (-)NCBI
Rnor_6.0872,820,276 - 72,841,491 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063264924   ⟹   XP_063120994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,522,275 - 76,543,584 (-)NCBI
RefSeq Acc Id: XM_063264925   ⟹   XP_063120995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,523,950 - 76,543,584 (-)NCBI
RefSeq Acc Id: XM_063264926   ⟹   XP_063120996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,543,584 (-)NCBI
RefSeq Acc Id: XM_063264927   ⟹   XP_063120997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,543,661 (-)NCBI
RefSeq Acc Id: XM_063264928   ⟹   XP_063120998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,543,584 (-)NCBI
RefSeq Acc Id: XM_063264929   ⟹   XP_063120999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,522,275 - 76,538,173 (-)NCBI
RefSeq Acc Id: XM_063264930   ⟹   XP_063121000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,543,584 (-)NCBI
RefSeq Acc Id: XM_063264931   ⟹   XP_063121001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,523,950 - 76,543,584 (-)NCBI
RefSeq Acc Id: XM_063264932   ⟹   XP_063121002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,523,144 - 76,543,584 (-)NCBI
RefSeq Acc Id: XM_063264933   ⟹   XP_063121003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,522,275 - 76,543,661 (-)NCBI
RefSeq Acc Id: XM_063264934   ⟹   XP_063121004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,522,275 - 76,543,584 (-)NCBI
RefSeq Acc Id: XM_063264935   ⟹   XP_063121005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8876,522,193 - 76,538,173 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001029240 (Get FASTA)   NCBI Sequence Viewer  
  NP_001029241 (Get FASTA)   NCBI Sequence Viewer  
  NP_001029242 (Get FASTA)   NCBI Sequence Viewer  
  NP_001029243 (Get FASTA)   NCBI Sequence Viewer  
  NP_001029244 (Get FASTA)   NCBI Sequence Viewer  
  NP_001029245 (Get FASTA)   NCBI Sequence Viewer  
  NP_001029246 (Get FASTA)   NCBI Sequence Viewer  
  NP_001029247 (Get FASTA)   NCBI Sequence Viewer  
  NP_001288265 (Get FASTA)   NCBI Sequence Viewer  
  NP_001288271 (Get FASTA)   NCBI Sequence Viewer  
  NP_001288665 (Get FASTA)   NCBI Sequence Viewer  
  NP_062004 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243452 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243455 (Get FASTA)   NCBI Sequence Viewer  
  XP_006243457 (Get FASTA)   NCBI Sequence Viewer  
  XP_008764429 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120994 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120995 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120996 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120997 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120998 (Get FASTA)   NCBI Sequence Viewer  
  XP_063120999 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121000 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121001 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121002 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121003 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121004 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121005 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA18097 (Get FASTA)   NCBI Sequence Viewer  
  AAA18098 (Get FASTA)   NCBI Sequence Viewer  
  AAA18099 (Get FASTA)   NCBI Sequence Viewer  
  AAA21802 (Get FASTA)   NCBI Sequence Viewer  
  AAA21803 (Get FASTA)   NCBI Sequence Viewer  
  AAA21804 (Get FASTA)   NCBI Sequence Viewer  
  AAA21805 (Get FASTA)   NCBI Sequence Viewer  
  AAA40773 (Get FASTA)   NCBI Sequence Viewer  
  AAA40774 (Get FASTA)   NCBI Sequence Viewer  
  AAA42252 (Get FASTA)   NCBI Sequence Viewer  
  AAA42253 (Get FASTA)   NCBI Sequence Viewer  
  AAA42254 (Get FASTA)   NCBI Sequence Viewer  
  AAA42290 (Get FASTA)   NCBI Sequence Viewer  
  AAH78780 (Get FASTA)   NCBI Sequence Viewer  
  AAK54229 (Get FASTA)   NCBI Sequence Viewer  
  AAK54241 (Get FASTA)   NCBI Sequence Viewer  
  AAK54242 (Get FASTA)   NCBI Sequence Viewer  
  AAK54243 (Get FASTA)   NCBI Sequence Viewer  
  CAA26258 (Get FASTA)   NCBI Sequence Viewer  
  CAA26259 (Get FASTA)   NCBI Sequence Viewer  
  EDL84231 (Get FASTA)   NCBI Sequence Viewer  
  EDL84232 (Get FASTA)   NCBI Sequence Viewer  
  EDL84233 (Get FASTA)   NCBI Sequence Viewer  
  EDL84234 (Get FASTA)   NCBI Sequence Viewer  
  EDL84235 (Get FASTA)   NCBI Sequence Viewer  
  EDL84236 (Get FASTA)   NCBI Sequence Viewer  
  EDL84237 (Get FASTA)   NCBI Sequence Viewer  
  EDL84238 (Get FASTA)   NCBI Sequence Viewer  
  EDL84239 (Get FASTA)   NCBI Sequence Viewer  
  EDL84240 (Get FASTA)   NCBI Sequence Viewer  
  EDL84241 (Get FASTA)   NCBI Sequence Viewer  
  EDL84242 (Get FASTA)   NCBI Sequence Viewer  
  EDL84243 (Get FASTA)   NCBI Sequence Viewer  
  EDL84244 (Get FASTA)   NCBI Sequence Viewer  
  EDL84245 (Get FASTA)   NCBI Sequence Viewer  
  EDL84246 (Get FASTA)   NCBI Sequence Viewer  
  EDL84247 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024493
  ENSRNOP00000024493.5
  ENSRNOP00000024575
  ENSRNOP00000024575.6
  ENSRNOP00000024617
  ENSRNOP00000024617.6
  ENSRNOP00000047134
  ENSRNOP00000047134.6
  ENSRNOP00000048499
  ENSRNOP00000048499.3
  ENSRNOP00000054446.5
  ENSRNOP00000070151.2
  ENSRNOP00000074187.2
  ENSRNOP00000084613.1
  ENSRNOP00000085868
  ENSRNOP00000085868.1
  ENSRNOP00055037733
  ENSRNOP00060027176
  ENSRNOP00065008418
GenBank Protein P04692 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001029241   ⟸   NM_001034069
- Peptide Label: isoform Tpm1.6cy
- UniProtKB: A0A8L2UK34 (UniProtKB/TrEMBL),   A6KEY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029242   ⟸   NM_001034070
- Peptide Label: isoform Tpm1.7cy
- UniProtKB: Q63607 (UniProtKB/TrEMBL),   Q63583 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029243   ⟸   NM_001034071
- Peptide Label: isoform Tpm1.3sm
- UniProtKB: Q923Z2 (UniProtKB/TrEMBL),   F7FK40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029244   ⟸   NM_001034072
- Peptide Label: isoform Tpm1.10br
- UniProtKB: A6KEY5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029240   ⟸   NM_001034068
- Peptide Label: isoform a
- UniProtKB: Q91XN6 (UniProtKB/TrEMBL),   A0A096MIT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029245   ⟸   NM_001034073
- Peptide Label: isoform Tpm1.8cy
- UniProtKB: A6KEZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029246   ⟸   NM_001034074
- Peptide Label: isoform Tpm1.9cy
- UniProtKB: Q6AZ25 (UniProtKB/TrEMBL),   A0A0G2JSQ4 (UniProtKB/TrEMBL),   A0A9K3Y6T5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_062004   ⟸   NM_019131
- Peptide Label: isoform Tpm1.11br
- UniProtKB: A6KEZ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029247   ⟸   NM_001034075
- Peptide Label: isoform Tpm1.13
- UniProtKB: Q91XN7 (UniProtKB/TrEMBL),   A6KEZ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243452   ⟸   XM_006243390
- Peptide Label: isoform X2
- UniProtKB: A6KEY1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243457   ⟸   XM_006243395
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006243455   ⟸   XM_006243393
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_008764429   ⟸   XM_008766207
- Peptide Label: isoform X1
- UniProtKB: A6KEY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288271   ⟸   NM_001301342
- Peptide Label: isoform Tpm1.2st
- UniProtKB: A6KEY7 (UniProtKB/TrEMBL),   A0A8I6A156 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288265   ⟸   NM_001301336
- Peptide Label: isoform Tpm1.1st
- UniProtKB: Q63608 (UniProtKB/Swiss-Prot),   Q63582 (UniProtKB/Swiss-Prot),   Q53X09 (UniProtKB/Swiss-Prot),   P18344 (UniProtKB/Swiss-Prot),   P18343 (UniProtKB/Swiss-Prot),   P18342 (UniProtKB/Swiss-Prot),   P06469 (UniProtKB/Swiss-Prot),   Q63609 (UniProtKB/Swiss-Prot),   P04692 (UniProtKB/Swiss-Prot),   A6KEY9 (UniProtKB/TrEMBL),   A0A0G2K7F7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288665   ⟸   NM_001301736
- Peptide Label: isoform Tpm1.12br
- UniProtKB: A6KEZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000054446   ⟸   ENSRNOT00000057641
RefSeq Acc Id: ENSRNOP00000048499   ⟸   ENSRNOT00000048044
RefSeq Acc Id: ENSRNOP00000024617   ⟸   ENSRNOT00000024617
RefSeq Acc Id: ENSRNOP00000024575   ⟸   ENSRNOT00000024575
RefSeq Acc Id: ENSRNOP00000024493   ⟸   ENSRNOT00000024493
RefSeq Acc Id: ENSRNOP00000074187   ⟸   ENSRNOT00000090288
RefSeq Acc Id: ENSRNOP00000070151   ⟸   ENSRNOT00000085894
RefSeq Acc Id: ENSRNOP00000047134   ⟸   ENSRNOT00000040808
RefSeq Acc Id: ENSRNOP00000085868   ⟸   ENSRNOT00000099012
RefSeq Acc Id: ENSRNOP00000084613   ⟸   ENSRNOT00000112475
RefSeq Acc Id: XP_063120997   ⟸   XM_063264927
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063120996   ⟸   XM_063264926
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063120998   ⟸   XM_063264928
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063121000   ⟸   XM_063264930
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063121005   ⟸   XM_063264935
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063121003   ⟸   XM_063264933
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063121004   ⟸   XM_063264934
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063120994   ⟸   XM_063264924
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063120999   ⟸   XM_063264929
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063121002   ⟸   XM_063264932
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063120995   ⟸   XM_063264925
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063121001   ⟸   XM_063264931
- Peptide Label: isoform X12

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P04692-F1-model_v2 AlphaFold P04692 1-284 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696094
Promoter ID:EPDNEW_R6619
Type:multiple initiation site
Name:Tpm1_2
Description:tropomyosin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6620  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0872,836,061 - 72,836,121EPDNEW
RGD ID:13696095
Promoter ID:EPDNEW_R6620
Type:multiple initiation site
Name:Tpm1_1
Description:tropomyosin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R6619  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0872,841,467 - 72,841,527EPDNEW
RGD ID:6849478
Promoter ID:EP25017
Type:single initiation site
Name:RN_TPMA
Description:Tropomyosin-alpha (skeletal muscle alpha)
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 139; Mammalian tropomyosin alpha
Tissues & Cell Lines:striated muscle, smooth muscle
Experiment Methods:Nuclease protection; Sequencing of a full-length cDNA; Primer extension; Nuclease protection; transfected or transformed cells
Position:No map positions available.

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3898 AgrOrtholog
BioCyc Gene G2FUF-29996 BioCyc
Ensembl Genes ENSRNOG00000018184 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055026478 UniProtKB/Swiss-Prot
  ENSRNOG00060018824 UniProtKB/Swiss-Prot
  ENSRNOG00065007328 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000024493 ENTREZGENE
  ENSRNOT00000024493.8 UniProtKB/TrEMBL
  ENSRNOT00000024575 ENTREZGENE
  ENSRNOT00000024575.9 UniProtKB/TrEMBL
  ENSRNOT00000024617 ENTREZGENE
  ENSRNOT00000024617.8 UniProtKB/TrEMBL
  ENSRNOT00000040808 ENTREZGENE
  ENSRNOT00000040808.7 UniProtKB/TrEMBL
  ENSRNOT00000048044 ENTREZGENE
  ENSRNOT00000048044.6 UniProtKB/Swiss-Prot
  ENSRNOT00000057641.6 UniProtKB/TrEMBL
  ENSRNOT00000085894.2 UniProtKB/TrEMBL
  ENSRNOT00000090288.2 UniProtKB/TrEMBL
  ENSRNOT00000099012 ENTREZGENE
  ENSRNOT00000099012.1 UniProtKB/TrEMBL
  ENSRNOT00000112475.1 UniProtKB/TrEMBL
  ENSRNOT00055046005 UniProtKB/Swiss-Prot
  ENSRNOT00060033205 UniProtKB/Swiss-Prot
  ENSRNOT00065011561 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.370 UniProtKB/TrEMBL
  1.20.5.400 UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro Tropomyosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XRCC4-like_C UniProtKB/TrEMBL
KEGG Report rno:24851 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 24851 ENTREZGENE
PANTHER TROPOMYOSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TROPOMYOSIN ALPHA-1 CHAIN UniProtKB/Swiss-Prot
  TROPOMYOSIN ALPHA-1 CHAIN UniProtKB/TrEMBL
  TROPOMYOSIN ALPHA-1 CHAIN UniProtKB/TrEMBL
  TROPOMYOSIN ALPHA-3 CHAIN UniProtKB/TrEMBL
  TROPOMYOSIN-1, ISOFORMS 33_34 UniProtKB/TrEMBL
Pfam Tropomyosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tpm1 PhenoGen
PRINTS TROPOMYOSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TROPOMYOSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018184 RatGTEx
  ENSRNOG00055026478 RatGTEx
  ENSRNOG00060018824 RatGTEx
  ENSRNOG00065007328 RatGTEx
Superfamily-SCOP Tropomyosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096MIT6 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JSQ4 ENTREZGENE
  A0A0G2JX64_RAT UniProtKB/TrEMBL
  A0A0G2K7F7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A156 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GC15_RAT UniProtKB/TrEMBL
  A0A8J8YA57_RAT UniProtKB/TrEMBL
  A0A8L2UK34 ENTREZGENE, UniProtKB/TrEMBL
  A0A9K3Y6T5 ENTREZGENE, UniProtKB/TrEMBL
  A6KEY1 ENTREZGENE, UniProtKB/TrEMBL
  A6KEY3 ENTREZGENE, UniProtKB/TrEMBL
  A6KEY4_RAT UniProtKB/TrEMBL
  A6KEY5 ENTREZGENE, UniProtKB/TrEMBL
  A6KEY7 ENTREZGENE, UniProtKB/TrEMBL
  A6KEY8 ENTREZGENE, UniProtKB/TrEMBL
  A6KEY9 ENTREZGENE, UniProtKB/TrEMBL
  A6KEZ0_RAT UniProtKB/TrEMBL
  A6KEZ2 ENTREZGENE, UniProtKB/TrEMBL
  A6KEZ3 ENTREZGENE, UniProtKB/TrEMBL
  A6KEZ4_RAT UniProtKB/TrEMBL
  A6KEZ5 ENTREZGENE, UniProtKB/TrEMBL
  A6KEZ6 ENTREZGENE, UniProtKB/TrEMBL
  F7FIS4_RAT UniProtKB/TrEMBL
  F7FK40 ENTREZGENE
  P04692 ENTREZGENE
  P06469 ENTREZGENE
  P18342 ENTREZGENE
  P18343 ENTREZGENE
  P18344 ENTREZGENE
  Q53X09 ENTREZGENE
  Q63582 ENTREZGENE
  Q63583 ENTREZGENE, UniProtKB/TrEMBL
  Q63607 ENTREZGENE, UniProtKB/TrEMBL
  Q63608 ENTREZGENE
  Q63609 ENTREZGENE
  Q6AZ25 ENTREZGENE, UniProtKB/TrEMBL
  Q91XN6 ENTREZGENE, UniProtKB/TrEMBL
  Q91XN7 ENTREZGENE, UniProtKB/TrEMBL
  Q923Z2 ENTREZGENE, UniProtKB/TrEMBL
  TPM1_RAT UniProtKB/Swiss-Prot
UniProt Secondary A0A0G2JSQ4 UniProtKB/TrEMBL
  F7FK40 UniProtKB/TrEMBL
  P06469 UniProtKB/Swiss-Prot
  P18342 UniProtKB/Swiss-Prot
  P18343 UniProtKB/Swiss-Prot
  P18344 UniProtKB/Swiss-Prot
  P19354 UniProtKB/Swiss-Prot
  Q53X09 UniProtKB/Swiss-Prot
  Q63582 UniProtKB/Swiss-Prot
  Q63608 UniProtKB/Swiss-Prot
  Q63609 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-12 Tpm1  tropomyosin 1  Tpm1  tropomyosin 1, alpha  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Tpm1  tropomyosin 1, alpha      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_transcript multiple developmental and tissue specific isoforms are generated by alternative splicing and use of alternative promoters 730217