Tpm1 (tropomyosin 1, alpha) - Rat Genome Database
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Gene: Tpm1 (tropomyosin 1, alpha) Mus musculus
Analyze
Symbol: Tpm1
Name: tropomyosin 1, alpha
RGD ID: 11445
MGI Page MGI
Description: Exhibits actin filament binding activity. Involved in several processes, including cardiac muscle contraction; positive regulation of heart rate by epinephrine; and ventricular cardiac muscle tissue morphogenesis. Localizes to myofibril. Is expressed in several structures, including central nervous system; gut; heart; limb segment; and musculature. Used to study dilated cardiomyopathy 1Y and hypertrophic cardiomyopathy 3. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Y; familial hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 3. Orthologous to human TPM1 (tropomyosin 1); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA986836; AI854628; alph; alpha tropomyosin; alpha-TM; alpha-tropomyosin; expressed sequence AI854628; TM2; Tm3; Tmpa; Tpm-; Tpm-1; TPM1kappa; tropomyosin 1 kappa; tropomyosin alpha-1 chain; tropomyosin-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39966,929,872 - 66,956,954 (-)NCBIGRCm39mm39
GRCm38967,022,590 - 67,049,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl967,022,590 - 67,049,406 (-)EnsemblGRCm38mm10GRCm38
MGSCv37966,870,400 - 66,897,020 (-)NCBIGRCm37mm9NCBIm37
MGSCv36966,821,737 - 66,848,357 (-)NCBImm8
Celera964,256,822 - 64,283,903 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map936.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP,ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
8-Br-cAMP  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bexarotene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A2  (ISO)
bortezomib  (ISO)
bromobenzene  (ISO)
buspirone  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP,ISO)
choline  (EXP)
chromium atom  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (EXP,ISO)
clofibrate  (EXP)
clothianidin  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
Deoxycorticosterone acetate  (ISO)
dexamethasone  (EXP,ISO)
dibutyl phthalate  (EXP,ISO)
dihydroartemisinin  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
ethanol  (EXP)
finasteride  (ISO)
fluoxetine  (ISO)
flutamide  (ISO)
folic acid  (EXP)
fumonisin B1  (EXP)
furan  (ISO)
genistein  (ISO)
hydrogen peroxide  (ISO)
indole-3-methanol  (ISO)
indometacin  (ISO)
isoprenaline  (EXP)
ketamine  (ISO)
L-methionine  (EXP)
lithium atom  (ISO)
lithium chloride  (ISO)
lithium hydride  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
microcystin  (ISO)
microcystin-LR  (EXP)
mitoxantrone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (ISO)
N-nitrosomorpholine  (ISO)
naphthalene  (EXP)
naphthalenes  (ISO)
nefazodone  (ISO)
nickel atom  (EXP,ISO)
nicotinic acid  (EXP)
nimesulide  (ISO)
orphenadrine  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
pentanal  (ISO)
perfluorododecanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chloride  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
sarin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
Soman  (ISO)
sulforaphane  (EXP,ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (EXP)
urethane  (EXP)
valdecoxib  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway  (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
dilated cardiomyopathy pathway  (IEA)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
hypertrophic cardiomyopathy pathway  (IEA)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:1631061   PMID:2521606   PMID:3244365   PMID:7522680   PMID:7613033   PMID:7684495   PMID:7835079   PMID:8406508   PMID:8618961   PMID:8760295   PMID:8791411   PMID:8889548  
PMID:9143510   PMID:9400381   PMID:9440710   PMID:9441766   PMID:9473354   PMID:9615220   PMID:10231856   PMID:10349636   PMID:10400910   PMID:10725249   PMID:10833443   PMID:10922068  
PMID:11042159   PMID:11076861   PMID:11157795   PMID:11356630   PMID:11486040   PMID:11544199   PMID:11842132   PMID:12477932   PMID:12520002   PMID:14519438   PMID:14575301   PMID:14595844  
PMID:14610273   PMID:14633994   PMID:14722123   PMID:14766940   PMID:15486021   PMID:15513965   PMID:15782199   PMID:15888546   PMID:16141072   PMID:16141073   PMID:16183868   PMID:16494860  
PMID:16501024   PMID:16602821   PMID:16765662   PMID:17234967   PMID:17416600   PMID:17473172   PMID:17500595   PMID:17556658   PMID:17951248   PMID:18256189   PMID:18554416   PMID:18799693  
PMID:19118250   PMID:19124607   PMID:20799038   PMID:21056571   PMID:21221740   PMID:21267068   PMID:21304516   PMID:21311046   PMID:21565611   PMID:21677750   PMID:21825130   PMID:21873635  
PMID:22267199   PMID:22673621   PMID:22908310   PMID:23129807   PMID:23148217   PMID:23232082   PMID:23236519   PMID:23609439   PMID:23960072   PMID:24457600   PMID:24500875   PMID:24614889  
PMID:24876965   PMID:25369766   PMID:25470062   PMID:25987543   PMID:26496610   PMID:26718724   PMID:26932671   PMID:27976512   PMID:28600229   PMID:28701737   PMID:29078393   PMID:29518331  
PMID:29555813   PMID:29891665   PMID:30242109   PMID:30409884   PMID:30567734   PMID:30642949   PMID:30700554   PMID:32325033   PMID:32376900  


Genomics

Comparative Map Data
Tpm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39966,929,872 - 66,956,954 (-)NCBIGRCm39mm39
GRCm38967,022,590 - 67,049,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl967,022,590 - 67,049,406 (-)EnsemblGRCm38mm10GRCm38
MGSCv37966,870,400 - 66,897,020 (-)NCBIGRCm37mm9NCBIm37
MGSCv36966,821,737 - 66,848,357 (-)NCBImm8
Celera964,256,822 - 64,283,903 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map936.27NCBI
TPM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1563,042,632 - 63,071,915 (+)EnsemblGRCh38hg38GRCh38
GRCh381563,042,698 - 63,071,915 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371563,334,946 - 63,364,114 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371563,334,838 - 63,364,114 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361561,121,891 - 61,151,167 (+)NCBINCBI36hg18NCBI36
Build 341561,121,940 - 61,145,344NCBI
Celera1540,214,544 - 40,243,825 (+)NCBI
Cytogenetic Map15q22.2NCBI
HuRef1540,157,801 - 40,187,095 (+)NCBIHuRef
CHM1_11563,453,982 - 63,483,261 (+)NCBICHM1_1
Tpm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2867,635,479 - 67,662,330 (-)NCBI
Rnor_6.0 Ensembl872,814,740 - 72,842,228 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0872,814,737 - 72,841,496 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0877,147,580 - 77,174,392 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4871,331,304 - 71,358,063 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1871,355,970 - 71,371,766 (-)NCBI
Celera874,042,032 - 74,068,764 (+)NCBICelera
Cytogenetic Map8q24NCBI
Tpm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545012,194,755 - 12,224,011 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545012,197,241 - 12,223,372 (-)NCBIChiLan1.0ChiLan1.0
TPM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11560,286,587 - 60,315,530 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1560,286,587 - 60,315,530 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01541,989,239 - 42,018,520 (+)NCBIMhudiblu_PPA_v0panPan3
TPM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3027,636,283 - 27,664,442 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13027,636,407 - 27,664,907 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tpm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647123,643,645 - 23,670,775 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1108,986,981 - 109,019,440 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11108,986,981 - 109,016,090 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21120,211,175 - 120,240,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TPM1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12620,458,287 - 20,487,387 (-)NCBI
ChlSab1.1 Ensembl2620,466,037 - 20,487,135 (-)Ensembl
Tpm1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247819,414,500 - 9,442,357 (-)NCBI

Position Markers
RH144195  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38967,047,479 - 67,047,705UniSTSGRCm38
MGSCv37966,895,286 - 66,895,512UniSTSGRCm37
Celera964,282,207 - 64,282,433UniSTS
Cytogenetic Map9CUniSTS
cM Map940.0UniSTS
UniSTS:236174  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38967,028,892 - 67,029,144UniSTSGRCm38
MGSCv37966,876,699 - 66,876,951UniSTSGRCm37
Celera964,263,122 - 64,263,374UniSTS
Cytogenetic Map9CUniSTS
cM Map940.0UniSTS
UniSTS:236176  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38967,028,463 - 67,028,808UniSTSGRCm38
MGSCv37966,876,270 - 66,876,615UniSTSGRCm37
Celera964,262,693 - 64,263,038UniSTS
Cytogenetic Map9CUniSTS
cM Map940.0UniSTS
RH126046  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38967,031,797 - 67,032,015UniSTSGRCm38
MGSCv37966,879,604 - 66,879,822UniSTSGRCm37
Celera964,266,528 - 64,266,746UniSTS
Cytogenetic Map9CUniSTS
cM Map940.0UniSTS
Whitehead/MRC_RH9644.54UniSTS
AI854628  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38967,023,898 - 67,024,020UniSTSGRCm38
MGSCv37966,871,705 - 66,871,827UniSTSGRCm37
Celera964,258,127 - 64,258,249UniSTS
Cytogenetic Map9CUniSTS
cM Map940.0UniSTS
Whitehead/MRC_RH9643.7UniSTS
AA986836  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38967,022,798 - 67,022,879UniSTSGRCm38
MGSCv37966,870,605 - 66,870,686UniSTSGRCm37
Celera964,257,027 - 64,257,108UniSTS
Cytogenetic Map9CUniSTS
cM Map940.0UniSTS
Whitehead/MRC_RH9645.14UniSTS
RH140171  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38967,043,201 - 67,043,388UniSTSGRCm38
MGSCv37966,891,008 - 66,891,195UniSTSGRCm37
Celera964,277,929 - 64,278,116UniSTS
Cytogenetic Map9CUniSTS
cM Map940.0UniSTS
Tpm1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38967,022,844 - 67,023,063UniSTSGRCm38
MGSCv37966,870,651 - 66,870,870UniSTSGRCm37
Celera964,257,073 - 64,257,292UniSTS
Cytogenetic Map9CUniSTS
cM Map940.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208563Bmiq8_mbody mass index QTL 8 (mouse)92500000069000000Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93319972567199840Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93406754473531973Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93512317869123299Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93512317869123299Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93512317869123299Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93791224471912244Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93819229172192291Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93819229172192291Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93819229172192291Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93949260173492601Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94050829874700643Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94089776474897921Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94357343177573577Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94357343177573577Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94452089278520980Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94892377482923895Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94892377482923895Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94950899867244166Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
14746993Manh66_mmandible shape 66 (mouse)94990676683906766Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95024403884244166Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95251479868648726Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95465267888652678Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95653182690531973Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95789776471574472Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95789776486239920Mouse
13525007Lfhrvq1_mlow frequency time index heart rate varaiblity, QTL 1 (mouse)95887703568648726Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95911710593117252Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95911710593117252Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95946266493462846Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95946266493462846Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95946266493462846Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96513390995640755Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96592377486695914Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5476
Count of miRNA genes:847
Interacting mature miRNAs:1134
Transcripts:ENSMUST00000030185, ENSMUST00000034928, ENSMUST00000050905, ENSMUST00000113684, ENSMUST00000113685, ENSMUST00000113686, ENSMUST00000113687, ENSMUST00000113689, ENSMUST00000113690, ENSMUST00000113693, ENSMUST00000113695, ENSMUST00000113696, ENSMUST00000113697, ENSMUST00000113701, ENSMUST00000113705, ENSMUST00000113707, ENSMUST00000129466, ENSMUST00000129733, ENSMUST00000131279, ENSMUST00000139046, ENSMUST00000156899
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001164256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_024427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC166370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY806114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M22479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X64831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X68775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000030185   ⟹   ENSMUSP00000030185
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,028,848 - 67,049,262 (-)Ensembl
RefSeq Acc Id: ENSMUST00000034928   ⟹   ENSMUSP00000034928
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,022,593 - 67,049,209 (-)Ensembl
RefSeq Acc Id: ENSMUST00000050905   ⟹   ENSMUSP00000051888
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,027,892 - 67,049,264 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113684   ⟹   ENSMUSP00000109314
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,028,048 - 67,043,733 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113685   ⟹   ENSMUSP00000109315
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,027,892 - 67,049,213 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113686   ⟹   ENSMUSP00000109316
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,027,966 - 67,043,841 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113687   ⟹   ENSMUSP00000109317
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,027,989 - 67,049,143 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113689   ⟹   ENSMUSP00000109319
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,024,326 - 67,043,709 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113690   ⟹   ENSMUSP00000109320
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,022,593 - 67,043,962 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113693   ⟹   ENSMUSP00000109323
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,024,324 - 67,049,172 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113695   ⟹   ENSMUSP00000109325
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,022,592 - 67,043,802 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113696   ⟹   ENSMUSP00000109326
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,022,590 - 67,043,907 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113697   ⟹   ENSMUSP00000109327
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,022,615 - 67,049,275 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113701   ⟹   ENSMUSP00000109331
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,022,606 - 67,049,201 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113705   ⟹   ENSMUSP00000109335
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,022,590 - 67,049,267 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113707   ⟹   ENSMUSP00000109337
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,022,590 - 67,049,406 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129466
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,032,220 - 67,049,118 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129733   ⟹   ENSMUSP00000138784
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,022,606 - 67,049,186 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131279
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,033,778 - 67,049,191 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139046   ⟹   ENSMUSP00000138514
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,022,622 - 67,043,778 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156899
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl967,029,920 - 67,032,825 (-)Ensembl
RefSeq Acc Id: NM_001164248   ⟹   NP_001157720
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,935,172 - 66,956,495 (-)NCBI
GRCm38967,027,890 - 67,049,213 (-)NCBI
MGSCv37966,870,400 - 66,897,020 (-)RGD
Celera964,256,822 - 64,283,903 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164249   ⟹   NP_001157721
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,929,875 - 66,956,495 (-)NCBI
GRCm38967,022,593 - 67,049,213 (-)NCBI
MGSCv37966,870,400 - 66,897,020 (-)RGD
Celera964,256,822 - 64,283,903 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164250   ⟹   NP_001157722
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,929,875 - 66,956,495 (-)NCBI
GRCm38967,022,593 - 67,049,213 (-)NCBI
MGSCv37966,870,400 - 66,897,020 (-)RGD
Celera964,256,822 - 64,283,903 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164251   ⟹   NP_001157723
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,935,172 - 66,956,495 (-)NCBI
GRCm38967,027,890 - 67,049,213 (-)NCBI
MGSCv37966,870,400 - 66,897,020 (-)RGD
Celera964,256,822 - 64,283,903 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164252   ⟹   NP_001157724
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,929,875 - 66,951,153 (-)NCBI
GRCm38967,022,593 - 67,043,871 (-)NCBI
MGSCv37966,870,400 - 66,897,020 (-)RGD
Celera964,256,822 - 64,283,903 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164253   ⟹   NP_001157725
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,929,875 - 66,951,153 (-)NCBI
GRCm38967,022,593 - 67,043,871 (-)NCBI
MGSCv37966,870,400 - 66,897,020 (-)RGD
Celera964,256,822 - 64,283,903 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164254   ⟹   NP_001157726
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,935,172 - 66,951,153 (-)NCBI
GRCm38967,027,890 - 67,043,871 (-)NCBI
MGSCv37966,870,400 - 66,897,020 (-)RGD
Celera964,256,822 - 64,283,903 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164255   ⟹   NP_001157727
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,931,124 - 66,956,495 (-)NCBI
GRCm38967,023,842 - 67,049,213 (-)NCBI
MGSCv37966,870,400 - 66,897,020 (-)RGD
Celera964,256,822 - 64,283,903 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001164256   ⟹   NP_001157728
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,931,124 - 66,951,153 (-)NCBI
GRCm38967,023,842 - 67,043,871 (-)NCBI
MGSCv37966,870,400 - 66,897,020 (-)RGD
Celera964,256,822 - 64,283,903 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_024427   ⟹   NP_077745
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,929,875 - 66,956,495 (-)NCBI
GRCm38967,022,593 - 67,049,213 (-)NCBI
MGSCv37966,870,400 - 66,897,020 (-)RGD
Celera964,256,822 - 64,283,903 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511039   ⟹   XP_006511102
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,935,174 - 66,956,721 (-)NCBI
GRCm38967,027,892 - 67,049,439 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511040   ⟹   XP_006511103
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,935,174 - 66,956,954 (-)NCBI
GRCm38967,027,892 - 67,049,672 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511041   ⟹   XP_006511104
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,936,942 - 66,956,721 (-)NCBI
GRCm38967,029,660 - 67,049,439 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511042   ⟹   XP_006511105
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,935,174 - 66,956,721 (-)NCBI
GRCm38967,027,892 - 67,049,439 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511044   ⟹   XP_006511107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,929,872 - 66,956,721 (-)NCBI
GRCm38967,022,590 - 67,049,439 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511049   ⟹   XP_006511112
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,935,174 - 66,952,526 (-)NCBI
GRCm38967,027,892 - 67,044,943 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511050   ⟹   XP_006511113
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,936,942 - 66,952,526 (-)NCBI
GRCm38967,029,660 - 67,044,943 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511051   ⟹   XP_006511114
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,929,872 - 66,952,526 (-)NCBI
GRCm38967,022,590 - 67,044,943 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242715   ⟹   XP_011241017
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,935,174 - 66,956,954 (-)NCBI
GRCm38967,027,892 - 67,049,672 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011242716   ⟹   XP_011241018
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,935,174 - 66,952,526 (-)NCBI
GRCm38967,027,892 - 67,044,943 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244240   ⟹   XP_030100100
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,935,174 - 66,952,526 (-)NCBI
GRCm38967,027,892 - 67,044,943 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244241   ⟹   XP_030100101
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,929,872 - 66,956,721 (-)NCBI
GRCm38967,022,590 - 67,049,439 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154840   ⟹   XP_036010733
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39966,929,872 - 66,956,954 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001157720 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157721 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157722 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157723 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157724 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157725 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157726 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157727 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157728 (Get FASTA)   NCBI Sequence Viewer  
  NP_077745 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511102 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511103 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511104 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511105 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511107 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511112 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511113 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511114 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241017 (Get FASTA)   NCBI Sequence Viewer  
  XP_011241018 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100100 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100101 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010733 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40483 (Get FASTA)   NCBI Sequence Viewer  
  AAI31644 (Get FASTA)   NCBI Sequence Viewer  
  AAI32036 (Get FASTA)   NCBI Sequence Viewer  
  AAI32038 (Get FASTA)   NCBI Sequence Viewer  
  AAI45308 (Get FASTA)   NCBI Sequence Viewer  
  ATC20308 (Get FASTA)   NCBI Sequence Viewer  
  BAB21978 (Get FASTA)   NCBI Sequence Viewer  
  BAB22620 (Get FASTA)   NCBI Sequence Viewer  
  BAC28093 (Get FASTA)   NCBI Sequence Viewer  
  BAC36973 (Get FASTA)   NCBI Sequence Viewer  
  BAE40499 (Get FASTA)   NCBI Sequence Viewer  
  BAE40617 (Get FASTA)   NCBI Sequence Viewer  
  BAE40964 (Get FASTA)   NCBI Sequence Viewer  
  CAA46043 (Get FASTA)   NCBI Sequence Viewer  
  EDL26140 (Get FASTA)   NCBI Sequence Viewer  
  EDL26141 (Get FASTA)   NCBI Sequence Viewer  
  EDL26142 (Get FASTA)   NCBI Sequence Viewer  
  EDL26143 (Get FASTA)   NCBI Sequence Viewer  
  EDL26144 (Get FASTA)   NCBI Sequence Viewer  
  EDL26145 (Get FASTA)   NCBI Sequence Viewer  
  EDL26146 (Get FASTA)   NCBI Sequence Viewer  
  EDL26147 (Get FASTA)   NCBI Sequence Viewer  
  EDL26148 (Get FASTA)   NCBI Sequence Viewer  
  EDL26149 (Get FASTA)   NCBI Sequence Viewer  
  EDL26150 (Get FASTA)   NCBI Sequence Viewer  
  EDL26151 (Get FASTA)   NCBI Sequence Viewer  
  P58771 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_077745   ⟸   NM_024427
- Peptide Label: isoform Tpm1.6cy
- UniProtKB: P58771 (UniProtKB/Swiss-Prot),   Q564G1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157721   ⟸   NM_001164249
- Peptide Label: isoform Tpm1.2st
- UniProtKB: B7ZNL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157722   ⟸   NM_001164250
- Peptide Label: isoform Tpm1.7cy
- UniProtKB: E9Q450 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157724   ⟸   NM_001164252
- Peptide Label: isoform Tpm1.8cy
- UniProtKB: G5E8R1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157725   ⟸   NM_001164253
- Peptide Label: isoform Tpm1.9cy
- UniProtKB: G5E8R2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157727   ⟸   NM_001164255
- Peptide Label: isoform Tpm1.10br
- UniProtKB: E9Q452 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157728   ⟸   NM_001164256
- Peptide Label: isoform Tpm1.12br
- UniProtKB: G5E8R0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157720   ⟸   NM_001164248
- Peptide Label: isoform Tpm1.1st
- UniProtKB: P58771 (UniProtKB/Swiss-Prot),   Q545Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157723   ⟸   NM_001164251
- Peptide Label: isoform Tpm1.5cy
- UniProtKB: Q8BP43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157726   ⟸   NM_001164254
- Peptide Label: isoform Tpm1.13
- Sequence:
RefSeq Acc Id: XP_006511107   ⟸   XM_006511044
- Peptide Label: isoform X6
- UniProtKB: E9Q448 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511114   ⟸   XM_006511051
- Peptide Label: isoform X12
- UniProtKB: E9Q453 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511103   ⟸   XM_006511040
- Peptide Label: isoform X1
- UniProtKB: E9Q454 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511102   ⟸   XM_006511039
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006511105   ⟸   XM_006511042
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006511112   ⟸   XM_006511049
- Peptide Label: isoform X8
- UniProtKB: E9Q455 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511104   ⟸   XM_006511041
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006511113   ⟸   XM_006511050
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_011241017   ⟸   XM_011242715
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011241018   ⟸   XM_011242716
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_030100101   ⟸   XM_030244241
- Peptide Label: isoform X13
RefSeq Acc Id: XP_030100100   ⟸   XM_030244240
- Peptide Label: isoform X10
RefSeq Acc Id: ENSMUSP00000138514   ⟸   ENSMUST00000139046
RefSeq Acc Id: ENSMUSP00000051888   ⟸   ENSMUST00000050905
RefSeq Acc Id: ENSMUSP00000109315   ⟸   ENSMUST00000113685
RefSeq Acc Id: ENSMUSP00000109314   ⟸   ENSMUST00000113684
RefSeq Acc Id: ENSMUSP00000109317   ⟸   ENSMUST00000113687
RefSeq Acc Id: ENSMUSP00000109316   ⟸   ENSMUST00000113686
RefSeq Acc Id: ENSMUSP00000109319   ⟸   ENSMUST00000113689
RefSeq Acc Id: ENSMUSP00000109326   ⟸   ENSMUST00000113696
RefSeq Acc Id: ENSMUSP00000109325   ⟸   ENSMUST00000113695
RefSeq Acc Id: ENSMUSP00000109327   ⟸   ENSMUST00000113697
RefSeq Acc Id: ENSMUSP00000109323   ⟸   ENSMUST00000113693
RefSeq Acc Id: ENSMUSP00000109320   ⟸   ENSMUST00000113690
RefSeq Acc Id: ENSMUSP00000109337   ⟸   ENSMUST00000113707
RefSeq Acc Id: ENSMUSP00000109335   ⟸   ENSMUST00000113705
RefSeq Acc Id: ENSMUSP00000109331   ⟸   ENSMUST00000113701
RefSeq Acc Id: ENSMUSP00000034928   ⟸   ENSMUST00000034928
RefSeq Acc Id: ENSMUSP00000138784   ⟸   ENSMUST00000129733
RefSeq Acc Id: ENSMUSP00000030185   ⟸   ENSMUST00000030185
RefSeq Acc Id: XP_036010733   ⟸   XM_036154840
- Peptide Label: isoform X7

Promoters
RGD ID:6848514
Promoter ID:MM_ACW:51042
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung,   MEF_B4
Transcripts:PEEWU.ASEP07-UNSPLICED,   TPM1.VBSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36966,871,181 - 66,871,681 (-)MPROMDB
RGD ID:6845270
Promoter ID:MM_KWN:57850
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   Brain,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000048450,   UC009QFO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36966,880,386 - 66,881,447 (-)MPROMDB
RGD ID:6848490
Promoter ID:MM_ACW:51044
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:TPM1.TSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36966,883,571 - 66,884,071 (-)MPROMDB
RGD ID:6845271
Promoter ID:MM_KWN:57851
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000113684,   ENSMUST00000113686,   ENSMUST00000113689,   ENSMUST00000113690,   ENSMUST00000113695,   ENSMUST00000113696,   NM_001164254,   OTTMUST00000048462
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36966,891,486 - 66,892,047 (-)MPROMDB
RGD ID:6848491
Promoter ID:MM_ACW:51045
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   Kidney,   MEF_B4,   MEF_B6
Transcripts:TPM1.OSEP07,   TPM1.USEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36966,895,361 - 66,896,662 (-)MPROMDB
RGD ID:6845274
Promoter ID:MM_KWN:57852
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000030185,   ENSMUST00000034928,   ENSMUST00000113687,   ENSMUST00000113697,   ENSMUST00000113701,   ENSMUST00000113705,   NM_001164248,   NM_001164255,   OTTMUST00000048446,   OTTMUST00000048449,   OTTMUST00000048454,   OTTMUST00000048463,   OTTMUST00000048464
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36966,896,856 - 66,897,497 (-)MPROMDB
RGD ID:8670048
Promoter ID:EPDNEW_M13055
Type:initiation region
Name:Tpm1_2
Description:Mus musculus tropomyosin 1, alpha , transcript variant Tpm1.1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13056  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38967,043,794 - 67,043,854EPDNEW
RGD ID:8670050
Promoter ID:EPDNEW_M13056
Type:initiation region
Name:Tpm1_1
Description:Mus musculus tropomyosin 1, alpha , transcript variant Tpm1.1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13055  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38967,049,209 - 67,049,269EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98809 AgrOrtholog
Ensembl Genes ENSMUSG00000032366 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000030185 UniProtKB/TrEMBL
  ENSMUSP00000034928 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000051888 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109314 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109315 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109316 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109317 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109319 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109320 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109323 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109325 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109326 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109327 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109331 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109335 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109337 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000138514 UniProtKB/TrEMBL
  ENSMUSP00000138784 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030185 UniProtKB/TrEMBL
  ENSMUST00000034928 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000050905 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113684 UniProtKB/TrEMBL
  ENSMUST00000113685 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113686 UniProtKB/TrEMBL
  ENSMUST00000113687 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113689 UniProtKB/TrEMBL
  ENSMUST00000113690 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113693 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113695 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113696 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113697 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113701 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113705 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000113707 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000129733 UniProtKB/TrEMBL
  ENSMUST00000139046 UniProtKB/TrEMBL
InterPro Tropomyosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22003 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98809 ENTREZGENE
NCBI Gene 22003 ENTREZGENE
Pfam Tropomyosin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tropomyosin_1 UniProtKB/TrEMBL
PhenoGen Tpm1 PhenoGen
PRINTS TROPOMYOSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TROPOMYOSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R2Y2P8_MOUSE UniProtKB/TrEMBL
  A2RRI1_MOUSE UniProtKB/TrEMBL
  B7ZNL3 ENTREZGENE, UniProtKB/TrEMBL
  E9Q448 ENTREZGENE, UniProtKB/TrEMBL
  E9Q450 ENTREZGENE, UniProtKB/TrEMBL
  E9Q452 ENTREZGENE, UniProtKB/TrEMBL
  E9Q453 ENTREZGENE, UniProtKB/TrEMBL
  E9Q454 ENTREZGENE, UniProtKB/TrEMBL
  E9Q455 ENTREZGENE, UniProtKB/TrEMBL
  E9Q456_MOUSE UniProtKB/TrEMBL
  F8WID5_MOUSE UniProtKB/TrEMBL
  G5E8R0 ENTREZGENE, UniProtKB/TrEMBL
  G5E8R1 ENTREZGENE, UniProtKB/TrEMBL
  G5E8R2 ENTREZGENE, UniProtKB/TrEMBL
  P58771 ENTREZGENE
  Q545Y3 ENTREZGENE, UniProtKB/TrEMBL
  Q564G1 ENTREZGENE, UniProtKB/TrEMBL
  Q8BP43 ENTREZGENE, UniProtKB/TrEMBL
  Q8BSH3_MOUSE UniProtKB/TrEMBL
  S4R261_MOUSE UniProtKB/TrEMBL
  S4R2U0_MOUSE UniProtKB/TrEMBL
  TPM1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P02558 UniProtKB/Swiss-Prot
  P19354 UniProtKB/Swiss-Prot
  P46902 UniProtKB/Swiss-Prot
  P99034 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Tpm1  tropomyosin 1, alpha  AI854628  expressed sequence AI854628  Data Merged 737654 PROVISIONAL