Inf1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Inf1 (Infertility severity QTL 1) Rattus norvegicus

Symbol: Inf1
Name: Infertility severity QTL 1
RGD ID: 631842
Trait: seminal gland mass   (VT:0010524)    
Measurement Type: seminal vesicle wet weight   (CMO:0001603)    
LOD Score: 4.1
P Value: 0.001
Variance: 46.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8831,543,661 - 76,543,661RGD_MAPPER_PIPELINE
mRatBN7.2822,662,330 - 67,662,330RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0827,841,496 - 72,841,496RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0832,174,392 - 77,174,392RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4826,358,063 - 71,358,063RGDRGSC3.4
RGSC_v3.1826,371,766 - 71,371,766RGD
Cross Type: Not Available
Strains Crossed: BN-Lx/Cub SHR/OlaIpcv 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Inf1Ratmale infertility  IAGP 631224 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Inf1Ratdecreased litter size  IAGP 631224 RGD 
Inf1Ratreduced male fertility  IAGP 631224 RGD 
Inf1Ratsmall seminal vesicle  IAGP 631224 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Inf1Ratseminal vesicle wet weight  IDA 631224 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Inf1Ratcontrol condition  IDA 631224 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Inf1Ratpost excision weight measurement  IDA 631224 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Inf1RatBN-Lx/Cub  IEA 631224 RGD 
Inf1RatSHR/OlaIpcv  IEA 631224 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Inf1Ratseminal gland mass  IDA 631224 RGD 


#
Reference Title
Reference Citation
1. Mapping of quantitative trait loci for seminal vesicle mass and litter size to rat chromosome 8. Zidek V, etal., J Reprod Fertil 1999 Jul;116(2):329-33.


1 to 20 of 845 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1564154Npsr1neuropeptide S receptor 182260694622831558Rat
41303298LOC120094518small nucleolar RNA SNORA1782287206622872188Rat
1305822Dpy19l1dpy-19 like C-mannosyltransferase 182293316323021461Rat
1564311Dpy19l2dpy-19 like 282306259223181817Rat
1309396Tbx20T-box transcription factor 2082320010423258218Rat
11408475LOC108351663uncharacterized LOC10835166382356118923565793Rat
1307343Herpud2HERPUD family member 282357337423618380Rat
41278866Chmp5-ps2charged multivesicular body protein 5, pseudogene 282358138123589873Rat
41039100LOC120094096uncharacterized LOC12009409682364184323644778Rat
1560534Tpi1l1triosephosphate isomerase 1 like 182364776023654967Rat
11364134LOC108351664uncharacterized LOC10835166482367077623719688Rat
620469Septin7septin 782371944823783247Rat
40959368Rps6-ps5ribosomal protein S6, pseudogene 582375144723752237Rat
1307401Eepd1endonuclease/exonuclease/phosphatase family domain containing 182395725824064343Rat
41085565LOC120094485small nucleolar RNA SNORA1782403868524038818Rat
11472633LOC108351840uncharacterized LOC10835184082450405124513126Rat
41263087LOC120094098uncharacterized LOC12009409882474568124766629Rat
41357655LOC120094430U7 small nuclear RNA82475283524752896Rat
70880B3gat1beta-1,3-glucuronyltransferase 182508712325114692Rat
1564436Glb1l2galactosidase, beta 1-like 282511546225166843Rat

1 to 20 of 845 rows
1 to 20 of 1041 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10168D8Wox524785808190958082156Ratregion
10177D8Mit720184653163946531840Ratregion
10178D8Wox411884653172246531840Ratregion
10354D8Bord123085541543055415660Ratregion
10819D8Got4319283646953536469727Ratregion
33858D8Mit413284186687641867010Ratregion
33880D8Mit1212485489451654894646Ratregion
33887D8Mit313484269268442692818Ratregion
33913D8Mit1313284110190141102031Ratregion
33957D8Mit1622885848226258482492Ratregion
33973D8Mit219885009524950095447Ratregion
34116D8Mgh1213684600883646008974Ratregion
34415D8Mgh614486129029861290444Ratregion
11322D8Hmgc111584622932246229437Ratregion
11444D8Mgh512986764887467649003Ratregion
33559D8Mit510583084815430848259Ratregion
36117D8Rat4615784071306640713225Ratregion
36161D8Rat3617085423764454237814Ratregion
36257D8Rat3812185161880151618922Ratregion
36309D8Rat4115584762723547627390Ratregion
1 to 20 of 1041 rows

Flank 2: (Tpm1)
Rat AssemblyChrPosition (strand)Source
GRCr8876,516,654 - 76,543,661 (-)NCBI
mRatBN7.2867,635,479 - 67,662,330 (-)NCBI
mRatBN7.2 Ensembl867,635,479 - 67,662,802 (-)Ensembl
UTH_Rnor_SHR_Utx873,167,462 - 73,194,230 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.0871,440,391 - 71,467,160 (-)NCBI
UTH_Rnor_WKY_Bbb_1.0869,277,200 - 69,303,963 (-)NCBI
Rnor_6.0872,814,737 - 72,841,496 (-)NCBI
Rnor_6.0 Ensembl872,814,740 - 72,842,228 (-)Ensembl
Rnor_5.0877,147,580 - 77,174,392 (-)NCBI
RGSC_v3.4871,331,304 - 71,358,063 (-)NCBI
RGSC_v3.1871,355,970 - 71,371,766 (-)NCBI
Celera874,042,032 - 74,068,764 (+)NCBI
Cytogenetic Map8q24NCBI


1 to 10 of 89 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
1582229Stl20Serum triglyceride level QTL 203.20.0033blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)84863013149147989Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat

1 to 10 of 89 rows


Database
Acc Id
Source(s)
NCBI Gene Inf1

Note Type Note Reference
qtl_statistics_details QTL is also associated with litter size (LOD = 2.54, P = 0.003) 631224