A002A45 Marker Search Result - Rat Genome Database

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Marker: A002A45

Symbol: A002A45
Previously known as:
RGD ID: 5028739
Expected Size: 154 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2867,070,065 - 67,070,219 (+)MAPPERmRatBN7.2
Rnor_6.0872,198,111 - 72,198,264NCBIRnor6.0
Rnor_5.0871,865,828 - 71,865,981UniSTSRnor5.0
RGSC_v3.4870,811,570 - 70,811,723UniSTSRGSC3.4
Celera866,455,646 - 66,455,799UniSTS
Cytogenetic Map8q24UniSTS
Is Marker For: Genes:   Herc1   Fbxl22  




#
Reference Title
Reference Citation
1. UniSTS Pipeline RGD automated pipelines


 
Forward Primer GTCCTTTCTAATGACAATTA
Reverse Primer CTCTCAGTCAGGTTTTTC
 


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1306366Herc1HECT and RLD domain containing E3 ubiquitin protein ligase family member 186685716967070318Rat
1311830Fbxl22F-box and leucine-rich repeat protein 2286706999867076685Rat
RefSeq Transcripts XM_001075834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_236362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JH616418.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 56 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat

1 to 10 of 56 rows


Database
Acc Id
Source(s)
NCBI Gene 315771 UniSTS
  363083 UniSTS