Dcps (decapping enzyme, scavenger) - Rat Genome Database

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Pathways
Gene: Dcps (decapping enzyme, scavenger) Rattus norvegicus
Analyze
Symbol: Dcps
Name: decapping enzyme, scavenger
RGD ID: 628887
Description: Predicted to enable 5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatase activity; RNA 7-methylguanosine cap binding activity; and identical protein binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA and mRNA cis splicing, via spliceosome. Predicted to act upstream of or within protein glycosylation. Predicted to be located in cytosol; mitochondrion; and nucleoplasm. Predicted to be active in P-body and nucleus. Orthologous to human DCPS (decapping enzyme, scavenger); PARTICIPATES IN RNA degradation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DCS-1; decapping scavenger enzyme; Hint-5; hint-related 7meGMP-directed hydrolase; histidine triad nucleotide-binding protein 5; histidine triad protein member 5; m7GpppX diphosphatase; MGC124934; mRNA decapping enzyme; scavenger mRNA-decapping enzyme DcpS
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8841,729,507 - 41,782,222 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl841,724,563 - 41,782,222 (-)EnsemblGRCr8
mRatBN7.2833,468,669 - 33,524,407 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl833,415,671 - 33,524,389 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx837,543,756 - 37,594,658 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0835,826,794 - 35,877,696 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0833,689,635 - 33,740,539 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0836,321,992 - 36,374,665 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,321,993 - 36,374,673 (-)Ensemblrn6Rnor6.0
Rnor_5.0836,340,778 - 36,393,323 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4834,902,111 - 34,956,168 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera834,890,860 - 34,943,325 (-)NCBICelera
RGSC_v3.1834,910,877 - 34,964,934 (-)NCBI
Cytogenetic Map8q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-citrinin  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4,6-tribromophenol  (ISO)
2-methylcholine  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
benzoates  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
bortezomib  (ISO)
cadmium dichloride  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
doxorubicin  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
ivermectin  (ISO)
methapyrilene  (ISO)
nitrates  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
PCB138  (ISO)
pinostrobin  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
T-2 toxin  (ISO)
temozolomide  (ISO)
thiram  (ISO)
topotecan  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO,ISS)
cytosol  (IEA,ISO)
Golgi apparatus  (IEA)
Golgi cisterna membrane  (IEA)
membrane  (IEA)
mitochondrion  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO,ISS)
P-body  (IBA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases. Liu H, etal., EMBO J 2002 Sep 2;21(17):4699-708.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12871939   PMID:15383679   PMID:16140270   PMID:18426921   PMID:18441014   PMID:18839960   PMID:22985415   PMID:31505169  


Genomics

Comparative Map Data
Dcps
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8841,729,507 - 41,782,222 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl841,724,563 - 41,782,222 (-)EnsemblGRCr8
mRatBN7.2833,468,669 - 33,524,407 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl833,415,671 - 33,524,389 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx837,543,756 - 37,594,658 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0835,826,794 - 35,877,696 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0833,689,635 - 33,740,539 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0836,321,992 - 36,374,665 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,321,993 - 36,374,673 (-)Ensemblrn6Rnor6.0
Rnor_5.0836,340,778 - 36,393,323 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4834,902,111 - 34,956,168 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera834,890,860 - 34,943,325 (-)NCBICelera
RGSC_v3.1834,910,877 - 34,964,934 (-)NCBI
Cytogenetic Map8q21NCBI
DCPS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811126,304,060 - 126,350,005 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11126,304,060 - 126,350,005 (+)Ensemblhg38GRCh38
GRCh3711126,173,955 - 126,219,900 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,678,857 - 125,720,854 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3411125,678,856 - 125,720,853NCBI
Celera11123,338,823 - 123,380,801 (+)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11122,121,346 - 122,160,489 (+)NCBIHuRef
CHM1_111126,059,925 - 126,101,910 (+)NCBICHM1_1
T2T-CHM13v2.011126,335,487 - 126,381,408 (+)NCBIT2T-CHM13v2.0
Dcps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,035,710 - 35,087,283 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl935,035,704 - 35,087,357 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38935,124,414 - 35,175,987 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,124,408 - 35,176,061 (-)Ensemblmm10GRCm38
MGSCv37934,931,999 - 34,983,572 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36934,874,085 - 34,925,658 (-)NCBIMGSCv36mm8
Celera932,361,733 - 32,413,028 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map919.71NCBI
Dcps
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,326,971 - 27,367,342 (+)Ensembl
ChiLan1.0NW_00495541227,326,946 - 27,367,455 (+)NCBIChiLan1.0ChiLan1.0
DCPS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29126,988,240 - 127,028,261 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111128,095,958 - 128,140,188 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011121,119,720 - 121,159,513 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111125,028,350 - 125,073,044 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11125,028,616 - 125,068,807 (+)EnsemblpanPan2panpan1.1
DCPS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,168,887 - 8,212,582 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,172,313 - 8,212,832 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha58,229,988 - 8,273,841 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.058,124,304 - 8,168,219 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl58,124,307 - 8,168,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.158,193,951 - 8,237,818 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.058,167,710 - 8,211,572 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.058,201,886 - 8,245,793 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dcps
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,550,585 - 108,593,935 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365725,860,639 - 5,899,804 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365725,861,391 - 5,899,757 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCPS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,400,755 - 53,437,548 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1953,400,750 - 53,437,161 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2959,064,161 - 59,100,387 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DCPS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,430,713 - 117,470,489 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1117,430,993 - 117,474,986 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660438,600,092 - 8,640,850 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcps
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624812456,812 - 500,015 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624812456,758 - 499,262 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Dcps
464 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:297
Count of miRNA genes:187
Interacting mature miRNAs:214
Transcripts:ENSRNOT00000013763
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625851589833Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83776085958991895Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83776085961459705Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)83412590255607752Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
70206Alc20Alcohol consumption QTL 202drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)83910625849610361Rat

Markers in Region
AU047382  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,498,865 - 33,499,033 (+)MAPPERmRatBN7.2
Rnor_6.0836,349,175 - 36,349,340NCBIRnor6.0
Rnor_5.0836,367,833 - 36,367,998UniSTSRnor5.0
RGSC_v3.4834,929,751 - 34,929,916UniSTSRGSC3.4
Celera834,917,816 - 34,917,987UniSTS
Cytogenetic Map8q21UniSTS
RH141913  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,471,743 - 33,471,933 (+)MAPPERmRatBN7.2
Rnor_6.0836,322,065 - 36,322,254NCBIRnor6.0
Rnor_5.0836,340,851 - 36,341,040UniSTSRnor5.0
RGSC_v3.4834,902,184 - 34,902,373UniSTSRGSC3.4
Celera834,890,933 - 34,891,122UniSTS
RH 3.4 Map8296.8UniSTS
Cytogenetic Map8q21UniSTS
AU048581  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,491,074 - 33,491,260 (+)MAPPERmRatBN7.2
Rnor_6.0836,341,386 - 36,341,569NCBIRnor6.0
Rnor_5.0836,360,044 - 36,360,227UniSTSRnor5.0
RGSC_v3.4834,921,962 - 34,922,145UniSTSRGSC3.4
Celera834,910,026 - 34,910,209UniSTS
Cytogenetic Map8q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000013243   ⟹   ENSRNOP00000013243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl841,673,510 - 41,682,682 (-)Ensembl
mRatBN7.2 Ensembl833,415,680 - 33,464,459 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000013763   ⟹   ENSRNOP00000013763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl841,729,704 - 41,782,222 (-)Ensembl
mRatBN7.2 Ensembl833,471,691 - 33,524,389 (-)Ensembl
Rnor_6.0 Ensembl836,321,993 - 36,374,673 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093795   ⟹   ENSRNOP00000077981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl841,673,510 - 41,682,682 (-)Ensembl
mRatBN7.2 Ensembl833,415,912 - 33,464,433 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097121   ⟹   ENSRNOP00000097139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl841,673,510 - 41,706,701 (-)Ensembl
mRatBN7.2 Ensembl833,415,671 - 33,524,389 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099496   ⟹   ENSRNOP00000089685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl841,673,510 - 41,685,734 (-)Ensembl
mRatBN7.2 Ensembl833,415,736 - 33,464,236 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102578   ⟹   ENSRNOP00000094974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl841,724,563 - 41,782,222 (-)Ensembl
mRatBN7.2 Ensembl833,472,487 - 33,524,389 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108283   ⟹   ENSRNOP00000082289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl833,415,851 - 33,524,389 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116357   ⟹   ENSRNOP00000079877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl841,673,510 - 41,704,810 (-)Ensembl
mRatBN7.2 Ensembl833,415,701 - 33,446,918 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116767   ⟹   ENSRNOP00000081971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl841,673,510 - 41,712,551 (-)Ensembl
mRatBN7.2 Ensembl833,415,675 - 33,454,707 (-)Ensembl
RefSeq Acc Id: NM_153302   ⟹   NP_695214
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,729,507 - 41,782,222 (-)NCBI
mRatBN7.2833,471,668 - 33,524,389 (-)NCBI
Rnor_6.0836,321,992 - 36,374,665 (-)NCBI
Rnor_5.0836,340,778 - 36,393,323 (-)NCBI
RGSC_v3.4834,902,111 - 34,956,168 (-)RGD
Celera834,890,860 - 34,943,325 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_695214 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89773 (Get FASTA)   NCBI Sequence Viewer  
  AAI05901 (Get FASTA)   NCBI Sequence Viewer  
  AAN03664 (Get FASTA)   NCBI Sequence Viewer  
  EDL83281 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013763
GenBank Protein Q8K4F7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_695214   ⟸   NM_153302
- UniProtKB: F1LPT1 (UniProtKB/TrEMBL),   Q3B8P4 (UniProtKB/TrEMBL),   Q5EBD4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013763   ⟸   ENSRNOT00000013763
Ensembl Acc Id: ENSRNOP00000081971   ⟸   ENSRNOT00000116767
Ensembl Acc Id: ENSRNOP00000082289   ⟸   ENSRNOT00000108283
Ensembl Acc Id: ENSRNOP00000097139   ⟸   ENSRNOT00000097121
Ensembl Acc Id: ENSRNOP00000079877   ⟸   ENSRNOT00000116357
Ensembl Acc Id: ENSRNOP00000077981   ⟸   ENSRNOT00000093795
Ensembl Acc Id: ENSRNOP00000013243   ⟸   ENSRNOT00000013243
Ensembl Acc Id: ENSRNOP00000089685   ⟸   ENSRNOT00000099496
Ensembl Acc Id: ENSRNOP00000094974   ⟸   ENSRNOT00000102578

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K4F7-F1-model_v2 AlphaFold Q8K4F7 1-336 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695835
Promoter ID:EPDNEW_R6359
Type:multiple initiation site
Name:Dcps_1
Description:decapping enzyme, scavenger
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0836,374,677 - 36,374,737EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628887 AgrOrtholog
BioCyc Gene G2FUF-31199 BioCyc
Ensembl Genes ENSRNOG00000009850 Ensembl
  ENSRNOG00000009993 Ensembl
  ENSRNOG00000072197 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000013763 ENTREZGENE
Gene3D-CATH 3.30.200.40 UniProtKB/Swiss-Prot
  3.30.428.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7377732 IMAGE-MGC_LOAD
  IMAGE:7382111 IMAGE-MGC_LOAD
InterPro DcpS/DCS2 UniProtKB/Swiss-Prot
  Histidine_triad_CS UniProtKB/Swiss-Prot
  HIT-like_sf UniProtKB/Swiss-Prot
  Scavenger_mRNA_decap_enz_N UniProtKB/Swiss-Prot
KEGG Report rno:266605 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108575 IMAGE-MGC_LOAD
  MGC:124934 IMAGE-MGC_LOAD
NCBI Gene 266605 ENTREZGENE
PANTHER M7GPPPX DIPHOSPHATASE UniProtKB/Swiss-Prot
  PTHR12978 UniProtKB/Swiss-Prot
Pfam DcpS UniProtKB/Swiss-Prot
  DcpS_C UniProtKB/Swiss-Prot
PhenoGen Dcps PhenoGen
PIRSF Scavenger_mRNA_decap_enz UniProtKB/Swiss-Prot
PROSITE HIT_1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009850 RatGTEx
  ENSRNOG00000009993 RatGTEx
  ENSRNOG00000072197 RatGTEx
Superfamily-SCOP SSF102860 UniProtKB/Swiss-Prot
  SSF54197 UniProtKB/Swiss-Prot
UniProt A0A8I5YCL3_RAT UniProtKB/TrEMBL
  A0A8I5ZUN5_RAT UniProtKB/TrEMBL
  A0A8I6AW14_RAT UniProtKB/TrEMBL
  A0A8I6G8R8_RAT UniProtKB/TrEMBL
  A0A8I6GHJ6_RAT UniProtKB/TrEMBL
  A0A8I6GLE4_RAT UniProtKB/TrEMBL
  A0A8J8XPQ6_RAT UniProtKB/TrEMBL
  DCPS_RAT UniProtKB/Swiss-Prot
  F1LPT1 ENTREZGENE
  Q3B8P4 ENTREZGENE, UniProtKB/TrEMBL
  Q5EBD4 ENTREZGENE, UniProtKB/TrEMBL
  Q8K4F7 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Dcps  decapping enzyme, scavenger    mRNA decapping enzyme  Name updated 1299863 APPROVED
2005-01-20 Dcps  mRNA decapping enzyme      Symbol and Name status set to approved 1299863 APPROVED
2003-02-27 Dcps  mRNA decapping enzyme      Symbol and Name status set to provisional 70820 PROVISIONAL