Dcps (decapping enzyme, scavenger) - Rat Genome Database

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Gene: Dcps (decapping enzyme, scavenger) Rattus norvegicus
Analyze
Symbol: Dcps
Name: decapping enzyme, scavenger
RGD ID: 628887
Description: Predicted to enable 5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatase activity; RNA 7-methylguanosine cap binding activity; and identical protein binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA and mRNA cis splicing, via spliceosome. Predicted to be located in cytosol; mitochondrion; and nucleoplasm. Predicted to be active in P-body and nucleus. Orthologous to human DCPS (decapping enzyme, scavenger); PARTICIPATES IN RNA degradation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DCS-1; decapping scavenger enzyme; Hint-5; hint-related 7meGMP-directed hydrolase; histidine triad nucleotide-binding protein 5; histidine triad protein member 5; m7GpppX diphosphatase; MGC124934; mRNA decapping enzyme; scavenger mRNA-decapping enzyme DcpS
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8841,729,507 - 41,782,222 (-)NCBIGRCr8
mRatBN7.2833,468,669 - 33,524,407 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl833,415,671 - 33,524,389 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx837,543,756 - 37,594,658 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0835,826,794 - 35,877,696 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0833,689,635 - 33,740,539 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0836,321,992 - 36,374,665 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,321,993 - 36,374,673 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0836,340,778 - 36,393,323 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4834,902,111 - 34,956,168 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1834,910,877 - 34,964,934 (-)NCBI
Celera834,890,860 - 34,943,325 (-)NCBICelera
Cytogenetic Map8q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO,ISS)
cytosol  (ISO)
Golgi apparatus  (IEA)
membrane  (IEA)
mitochondrion  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,IEA,ISO,ISS)
P-body  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases. Liu H, etal., EMBO J 2002 Sep 2;21(17):4699-708.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12871939   PMID:15383679   PMID:16140270   PMID:18426921   PMID:18441014   PMID:18839960   PMID:22985415   PMID:31505169  


Genomics

Comparative Map Data
Dcps
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8841,729,507 - 41,782,222 (-)NCBIGRCr8
mRatBN7.2833,468,669 - 33,524,407 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl833,415,671 - 33,524,389 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx837,543,756 - 37,594,658 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0835,826,794 - 35,877,696 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0833,689,635 - 33,740,539 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0836,321,992 - 36,374,665 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl836,321,993 - 36,374,673 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0836,340,778 - 36,393,323 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4834,902,111 - 34,956,168 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1834,910,877 - 34,964,934 (-)NCBI
Celera834,890,860 - 34,943,325 (-)NCBICelera
Cytogenetic Map8q21NCBI
DCPS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811126,304,060 - 126,350,005 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11126,304,060 - 126,350,005 (+)EnsemblGRCh38hg38GRCh38
GRCh3711126,173,955 - 126,219,900 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611125,678,857 - 125,720,854 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411125,678,856 - 125,720,853NCBI
Celera11123,338,823 - 123,380,801 (+)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11122,121,346 - 122,160,489 (+)NCBIHuRef
CHM1_111126,059,925 - 126,101,910 (+)NCBICHM1_1
T2T-CHM13v2.011126,335,487 - 126,381,408 (+)NCBIT2T-CHM13v2.0
Dcps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39935,035,710 - 35,087,283 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl935,035,704 - 35,087,357 (-)EnsemblGRCm39 Ensembl
GRCm38935,124,414 - 35,175,987 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl935,124,408 - 35,176,061 (-)EnsemblGRCm38mm10GRCm38
MGSCv37934,931,999 - 34,983,572 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36934,874,085 - 34,925,658 (-)NCBIMGSCv36mm8
Celera932,361,733 - 32,413,028 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map919.71NCBI
Dcps
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541227,326,971 - 27,367,342 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541227,326,946 - 27,367,455 (+)NCBIChiLan1.0ChiLan1.0
DCPS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29126,988,240 - 127,028,261 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111128,095,958 - 128,140,188 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011121,119,720 - 121,159,513 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111125,028,350 - 125,073,044 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11125,028,616 - 125,068,807 (+)Ensemblpanpan1.1panPan2
DCPS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.158,168,887 - 8,212,582 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl58,172,313 - 8,212,832 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha58,229,988 - 8,273,841 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.058,124,304 - 8,168,219 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl58,124,307 - 8,168,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.158,193,951 - 8,237,818 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.058,167,710 - 8,211,572 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.058,201,886 - 8,245,793 (-)NCBIUU_Cfam_GSD_1.0
Dcps
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947108,550,585 - 108,593,935 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365725,860,639 - 5,899,804 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365725,861,391 - 5,899,757 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCPS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl953,400,755 - 53,437,548 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1953,400,750 - 53,437,161 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2959,064,161 - 59,100,387 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DCPS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11117,430,713 - 117,470,489 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1117,430,993 - 117,474,986 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660438,600,092 - 8,640,850 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcps
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624812456,812 - 500,015 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624812456,758 - 499,262 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dcps
395 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:297
Count of miRNA genes:187
Interacting mature miRNAs:214
Transcripts:ENSRNOT00000013763
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82664491246711092Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)82720571554998217Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)82824291253961020Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82950266550095447Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
70206Alc20Alcohol consumption QTL 202drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)83084815440713225Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815442692818Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815458482492Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83084815461290444Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815461290444Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat

Markers in Region
AU047382  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,498,865 - 33,499,033 (+)MAPPERmRatBN7.2
Rnor_6.0836,349,175 - 36,349,340NCBIRnor6.0
Rnor_5.0836,367,833 - 36,367,998UniSTSRnor5.0
RGSC_v3.4834,929,751 - 34,929,916UniSTSRGSC3.4
Celera834,917,816 - 34,917,987UniSTS
Cytogenetic Map8q21UniSTS
RH141913  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,471,743 - 33,471,933 (+)MAPPERmRatBN7.2
Rnor_6.0836,322,065 - 36,322,254NCBIRnor6.0
Rnor_5.0836,340,851 - 36,341,040UniSTSRnor5.0
RGSC_v3.4834,902,184 - 34,902,373UniSTSRGSC3.4
Celera834,890,933 - 34,891,122UniSTS
RH 3.4 Map8296.8UniSTS
Cytogenetic Map8q21UniSTS
AU048581  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2833,491,074 - 33,491,260 (+)MAPPERmRatBN7.2
Rnor_6.0836,341,386 - 36,341,569NCBIRnor6.0
Rnor_5.0836,360,044 - 36,360,227UniSTSRnor5.0
RGSC_v3.4834,921,962 - 34,922,145UniSTSRGSC3.4
Celera834,910,026 - 34,910,209UniSTS
Cytogenetic Map8q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 51 35 19 35 2 4 74 35 38 11 2
Low 1 6 6 6 6 7 3 6
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000013243   ⟹   ENSRNOP00000013243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl833,415,680 - 33,464,459 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000013763   ⟹   ENSRNOP00000013763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl833,471,691 - 33,524,389 (-)Ensembl
Rnor_6.0 Ensembl836,321,993 - 36,374,673 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093795   ⟹   ENSRNOP00000077981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl833,415,912 - 33,464,433 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097121   ⟹   ENSRNOP00000097139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl833,415,671 - 33,524,389 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099496   ⟹   ENSRNOP00000089685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl833,415,736 - 33,464,236 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102578   ⟹   ENSRNOP00000094974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl833,472,487 - 33,524,389 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108283   ⟹   ENSRNOP00000082289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl833,415,851 - 33,524,389 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116357   ⟹   ENSRNOP00000079877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl833,415,701 - 33,446,918 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116767   ⟹   ENSRNOP00000081971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl833,415,675 - 33,454,707 (-)Ensembl
RefSeq Acc Id: NM_153302   ⟹   NP_695214
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8841,729,507 - 41,782,222 (-)NCBI
mRatBN7.2833,471,668 - 33,524,389 (-)NCBI
Rnor_6.0836,321,992 - 36,374,665 (-)NCBI
Rnor_5.0836,340,778 - 36,393,323 (-)NCBI
RGSC_v3.4834,902,111 - 34,956,168 (-)RGD
Celera834,890,860 - 34,943,325 (-)RGD
Sequence:
RefSeq Acc Id: NP_695214   ⟸   NM_153302
- UniProtKB: F1LPT1 (UniProtKB/TrEMBL),   Q3B8P4 (UniProtKB/TrEMBL),   Q5EBD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000013763   ⟸   ENSRNOT00000013763
RefSeq Acc Id: ENSRNOP00000081971   ⟸   ENSRNOT00000116767
RefSeq Acc Id: ENSRNOP00000082289   ⟸   ENSRNOT00000108283
RefSeq Acc Id: ENSRNOP00000097139   ⟸   ENSRNOT00000097121
RefSeq Acc Id: ENSRNOP00000079877   ⟸   ENSRNOT00000116357
RefSeq Acc Id: ENSRNOP00000077981   ⟸   ENSRNOT00000093795
RefSeq Acc Id: ENSRNOP00000013243   ⟸   ENSRNOT00000013243
RefSeq Acc Id: ENSRNOP00000089685   ⟸   ENSRNOT00000099496
RefSeq Acc Id: ENSRNOP00000094974   ⟸   ENSRNOT00000102578

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K4F7-F1-model_v2 AlphaFold Q8K4F7 1-336 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695835
Promoter ID:EPDNEW_R6359
Type:multiple initiation site
Name:Dcps_1
Description:decapping enzyme, scavenger
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0836,374,677 - 36,374,737EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628887 AgrOrtholog
BioCyc Gene G2FUF-31199 BioCyc
Ensembl Genes ENSRNOG00000009850 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000009993 Ensembl
Ensembl Transcript ENSRNOT00000013763 ENTREZGENE
  ENSRNOT00000013763.6 UniProtKB/TrEMBL
  ENSRNOT00000093795.1 UniProtKB/TrEMBL
  ENSRNOT00000097121.1 UniProtKB/TrEMBL
  ENSRNOT00000099496.1 UniProtKB/TrEMBL
  ENSRNOT00000102578.1 UniProtKB/TrEMBL
  ENSRNOT00000108283.1 UniProtKB/TrEMBL
  ENSRNOT00000116767.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.200.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.428.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.1480.20 UniProtKB/TrEMBL
  mRNA decapping enzyme DcpS N-terminal domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7377732 IMAGE-MGC_LOAD
  IMAGE:7382111 IMAGE-MGC_LOAD
InterPro DcpS/DCS2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Histidine_triad_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HIT-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Scavenger_mRNA_decap_enz_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
KEGG Report rno:266605 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108575 IMAGE-MGC_LOAD
  MGC:124934 IMAGE-MGC_LOAD
NCBI Gene 266605 ENTREZGENE
PANTHER CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE 4 UniProtKB/TrEMBL
  M7GPPPX DIPHOSPHATASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SIALYLTRANSFERASE UniProtKB/TrEMBL
Pfam DcpS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DcpS_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_transf_29 UniProtKB/TrEMBL
PhenoGen Dcps PhenoGen
PIRSF Scavenger_mRNA_decap_enz UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
PROSITE HIT_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009850 RatGTEx
  ENSRNOG00000009993 RatGTEx
Superfamily-SCOP SSF102860 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54197 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5YCL3_RAT UniProtKB/TrEMBL
  A0A8I5ZUN5_RAT UniProtKB/TrEMBL
  A0A8I6AW14_RAT UniProtKB/TrEMBL
  A0A8I6G8R8_RAT UniProtKB/TrEMBL
  A0A8I6GHJ6_RAT UniProtKB/TrEMBL
  A0A8I6GLE4_RAT UniProtKB/TrEMBL
  A0A8J8XPQ6_RAT UniProtKB/TrEMBL
  DCPS_RAT UniProtKB/Swiss-Prot
  F1LPT1 ENTREZGENE
  Q3B8P4 ENTREZGENE, UniProtKB/TrEMBL
  Q5EBD4 ENTREZGENE, UniProtKB/TrEMBL
  Q8K4F7 ENTREZGENE
UniProt Secondary F1LPT1 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Dcps  decapping enzyme, scavenger    mRNA decapping enzyme  Name updated 1299863 APPROVED
2005-01-20 Dcps  mRNA decapping enzyme      Symbol and Name status set to approved 1299863 APPROVED
2003-02-27 Dcps  mRNA decapping enzyme      Symbol and Name status set to provisional 70820 PROVISIONAL