Cadm1 (cell adhesion molecule 1) - Rat Genome Database

Name: Cadm1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cadm1 (cell adhesion molecule 1) Rattus norvegicus

Analyze

Symbol:

Cadm1

Name:

cell adhesion molecule 1

RGD ID:

1310999

Description:

Enables cell adhesion molecule binding activity. Involved in several processes, including liver development; negative regulation of ERBB4 signaling pathway; and negative regulation of protein phosphorylation. Located in dendrite; plasma membrane; and postsynaptic density. Biomarker of hepatocellular carcinoma and lung adenocarcinoma. Human ortholog(s) of this gene implicated in breast carcinoma and prostate cancer. Orthologous to human CADM1 (cell adhesion molecule 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Igsf4; Igsf4a; immunoglobulin superfamily, member 4; immunoglobulin superfamily, member 4A; LOC363058; Necl-2; nectin-like protein 2; secretory isoform of TSLC1; sgigsf; spermatogenic immunoglobulin superfamily; synaptic cell adhesion molecule; SynCAM; TSLC-1; TSLC1; tumor suppressor in lung cancer 1 homolog

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CADM1 (cell adhesion molecule 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cadm1 (cell adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cadm1 (cell adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CADM1 (cell adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CADM1 (cell adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cadm1 (cell adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CADM1 (cell adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CADM1 (cell adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cadm1 (cell adhesion molecule 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CADM1 (cell adhesion molecule 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cadm1 (cell adhesion molecule 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cadm1a (cell adhesion molecule 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cadm1b (cell adhesion molecule 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	dpr16	Alliance	DIOPT (InParanoid\|SonicParanoid)
Drosophila melanogaster (fruit fly):	dpr19	Alliance	DIOPT (InParanoid\|SonicParanoid)
Drosophila melanogaster (fruit fly):	dpr15	Alliance	DIOPT (InParanoid\|SonicParanoid)

Allele / Splice:

Cadm1^{Tn(sb-T2/Bart3)2.229Mcwi}

Genetic Models:

F344-Cadm1^{Tn(sb-T2/Bart3)2.229Mcwi}

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	47,847,836 - 48,178,703 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	47,847,325 - 48,182,833 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	53,352,549 - 53,672,383 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	51,631,357 - 51,951,198 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	49,495,629 - 49,815,471 (+)	NCBI	Rnor_WKY
Rnor_6.0	8	51,858,906 - 52,200,591 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	52,127,399 - 52,189,722 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	50,460,752 - 50,796,128 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	50,765,645 - 51,108,962 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	50,784,698 - 51,128,015 (+)	NCBI
Celera	8	47,421,398 - 47,739,897 (+)	NCBI		Celera
Cytogenetic Map	8	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

breast carcinoma (ISO)

Breast Neoplasms (ISO)

cervix uteri carcinoma in situ (ISO)

Chromosome 11, Partial Trisomy 11q (ISO)

Dwarfism (ISO)

genetic disease (ISO)

hepatocellular carcinoma (IEP)

intellectual disability (ISO)

lung adenocarcinoma (IEP)

mental depression (ISO)

mitochondrial metabolism disease (ISO)

Ovarian Neoplasms (ISO)

prostate cancer (ISO)

Uterine Cervical Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,4-dinitrotoluene (EXP)

2-acetamidofluorene (EXP)

2-hydroxypropanoic acid (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3-chloropropane-1,2-diol (EXP)

3-methylcholanthrene (EXP)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

carmustine (ISO)

casticin (ISO)

ciglitazone (EXP)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cumene (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

DDE (EXP)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP,ISO)

diethylstilbestrol (ISO)

dimethyl sulfoxide (EXP)

dioxygen (ISO)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

epoxiconazole (EXP)

ethanol (EXP,ISO)

fenthion (ISO)

finasteride (EXP)

folic acid (ISO)

fragrance (ISO)

fulvestrant (ISO)

Indeno[1,2,3-cd]pyrene (ISO)

leflunomide (EXP)

linuron (EXP)

mercury atom (ISO)

mercury(0) (ISO)

methidathion (ISO)

methotrexate (ISO)

methylseleninic acid (ISO)

mono(2-ethylhexyl) phthalate (ISO)

Monobutylphthalate (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

paraquat (EXP)

parathion (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

piroxicam (ISO)

prochloraz (EXP)

procymidone (EXP)

progesterone (ISO)

quercetin (EXP,ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tamibarotene (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (EXP)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (ISO)

tunicamycin (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zinc atom (ISO)

zinc sulfate (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activated T cell proliferation (ISO)

bone development (ISO)

brain development (IEP)

calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules (ISO)

cell adhesion (ISO)

cell recognition (IBA,ISO,ISS)

detection of stimulus (IBA,ISO,ISS)

heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (ISO,ISS)

homophilic cell adhesion via plasma membrane adhesion molecules (IBA,ISO,ISS)

liver development (IMP)

lymphocyte migration into lymphoid organs (ISO)

maintenance of postsynaptic specialization structure (ISO)

negative regulation of ERBB4 signaling pathway (IMP)

negative regulation of protein phosphorylation (IMP)

positive regulation of cytokine production (ISO)

positive regulation of natural killer cell mediated cytotoxicity (ISO,ISS)

presynapse assembly (ISO)

retrograde trans-synaptic signaling by trans-synaptic protein complex (ISO)

susceptibility to natural killer cell mediated cytotoxicity (IBA,ISO,ISS)

synapse assembly (ISO)

synaptic membrane adhesion (ISO)

T cell mediated cytotoxicity (ISO)

unidimensional cell growth (ISO)

Cellular Component

axon (ISO)

basolateral plasma membrane (ISO,ISS)

cell body fiber (ISO)

cell-cell junction (ISO,ISS)

dendrite (IDA,ISO)

glutamatergic synapse (ISO)

membrane (IEA)

neuron projection (IBA)

neuron projection (IDA)

plasma membrane (IBA)

plasma membrane (IDA,ISO)

plasma membrane (ISO)

postsynaptic density (IDA)

postsynaptic membrane (ISO)

presynaptic membrane (ISO)

Schaffer collateral - CA1 synapse (ISO)

synapse (IBA,ISO)

synaptic vesicle (ISO)

varicosity (ISO)

Molecular Function

cell adhesion molecule binding (IPI)

PDZ domain binding (ISO,ISS)

protein binding (IPI,ISO)

protein homodimerization activity (ISO,ISS)

signaling receptor binding (IBA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Quantitative analysis of associations between DNA hypermethylation, hypomethylation, and DNMT RNA levels in ovarian tumors.	Ehrlich M, etal., Oncogene. 2006 Apr 27;25(18):2636-45.
2.	SynCAMs organize synapses through heterophilic adhesion.	Fogel AI, etal., J Neurosci. 2007 Nov 14;27(46):12516-30.
3.	Promoter methylation of TSLC1 and tumor suppression by its gene product in human prostate cancer.	Fukuhara H, etal., Jpn J Cancer Res. 2002 Jun;93(6):605-9.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
6.	Downregulation of TSLC1 and DAL-1 expression occurs frequently in breast cancer.	Heller G, etal., Breast Cancer Res Treat. 2007 Jul;103(3):283-91. Epub 2007 Jan 27.
7.	SgIGSF is a novel biliary-epithelial cell adhesion molecule mediating duct/ductule development.	Ito A, etal., Hepatology. 2007 Mar;45(3):684-94.
8.	IGSF4 promoter methylation and expression silencing in human cervical cancer.	Li J, etal., Gynecol Oncol. 2005 Jan;96(1):150-8.
9.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
10.	MPP2 is a postsynaptic MAGUK scaffold protein that links SynCAM1 cell adhesion molecules to core components of the postsynaptic density.	Rademacher N, etal., Sci Rep. 2016 Oct 19;6:35283. doi: 10.1038/srep35283.
11.	GOA pipeline	RGD automated data pipeline
12.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
14.	Reduced expression of the Tslc1 gene and its aberrant DNA methylation in rat lung tumors.	Shimizu K, etal., Biochem Biophys Res Commun. 2006 Aug 18;347(1):358-62. Epub 2006 Jun 23.
15.	Expression and DNA methylation patterns of Tslc1 and Dal-1 genes in hepatocellular carcinomas induced by N-nitrosodiethylamine in rats.	Tsujiuchi T, etal., Cancer Sci. 2007 Jul;98(7):943-8. Epub 2007 Apr 12.
16.	Necl-2/CADM1 interacts with ErbB4 and regulates its activity in GABAergic neurons.	Yamada A, etal., Mol Cell Neurosci. 2013 Sep;56:234-43. doi: 10.1016/j.mcn.2013.06.003. Epub 2013 Jun 11.
17.	Involvement of tumor suppressor in lung cancer 1 gene expression in cervical carcinogenesis.	Yang YX, etal., Int J Gynecol Cancer. 2006 Sep-Oct;16(5):1868-72.

Additional References at PubMed

PMID:12202822	PMID:12477932	PMID:12826663	PMID:15458844	PMID:15707673	PMID:15811952	PMID:16311015	PMID:17724124	PMID:18055550	PMID:19796685	PMID:19827159	PMID:20368431
PMID:21145003	PMID:21482734	PMID:22512338	PMID:22876197	PMID:23179183	PMID:23209303	PMID:23376485	PMID:24687959	PMID:26259600	PMID:26687224	PMID:27072493	PMID:28335740
PMID:32929607

Genomics

Comparative Map Data

Cadm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	47,847,836 - 48,178,703 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	47,847,325 - 48,182,833 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	53,352,549 - 53,672,383 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	51,631,357 - 51,951,198 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	49,495,629 - 49,815,471 (+)	NCBI	Rnor_WKY
Rnor_6.0	8	51,858,906 - 52,200,591 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	52,127,399 - 52,189,722 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	50,460,752 - 50,796,128 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	50,765,645 - 51,108,962 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	50,784,698 - 51,128,015 (+)	NCBI
Celera	8	47,421,398 - 47,739,897 (+)	NCBI		Celera
Cytogenetic Map	8	q23	NCBI

CADM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	115,169,236 - 115,504,415 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	11	115,169,218 - 115,504,957 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	115,039,956 - 115,375,133 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	114,549,555 - 114,880,451 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	114,550,226 - 114,880,325	NCBI
Celera	11	112,198,721 - 112,530,558 (-)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	110,977,380 - 111,307,896 (-)	NCBI		HuRef
CHM1_1	11	114,927,793 - 115,258,644 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	115,182,091 - 115,517,534 (-)	NCBI		T2T-CHM13v2.0

Cadm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	47,441,468 - 47,773,578 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	47,441,471 - 47,769,413 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	47,530,170 - 47,862,280 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	47,530,173 - 47,857,637 (+)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	9	47,530,173 - 47,858,115 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	47,338,435 - 47,661,468 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	47,281,347 - 47,604,379 (+)	NCBI		MGSCv36	mm8
Celera	9	44,821,429 - 45,143,180 (+)	NCBI		Celera
Cytogenetic Map	9	A5.3	NCBI

Cadm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	16,669,099 - 17,005,014 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	16,673,401 - 17,005,082 (-)	NCBI	ChiLan1.0	ChiLan1.0

CADM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	113,950,291 - 114,280,453 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	113,950,291 - 114,280,324 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	11	110,008,314 - 110,347,876 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

CADM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	17,865,317 - 18,190,855 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	17,864,453 - 18,194,694 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	17,790,071 - 18,115,562 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	17,811,250 - 18,138,114 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	5	17,950,729 - 18,276,001 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	17,853,222 - 18,178,288 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	17,896,857 - 18,222,408 (+)	NCBI		UU_Cfam_GSD_1.0

Cadm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	97,639,469 - 97,962,796 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	565,843 - 883,609 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936542	569,739 - 883,738 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CADM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	42,644,429 - 42,985,017 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	42,644,487 - 42,984,934 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	47,728,189 - 47,771,865 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CADM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	106,539,262 - 106,876,397 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	106,539,136 - 106,606,637 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	19,155,896 - 19,490,046 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cadm1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	10,591,824 - 10,932,981 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624784	10,595,876 - 10,933,024 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cadm1
1080 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	143
Count of miRNA genes:	126
Interacting mature miRNAs:	135
Transcripts:	ENSRNOT00000052392
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	27205715	54998217	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	28242912	53961020	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	29502665	50095447	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	58482492	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	30848154	61290444	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
5684993	Bmd84	Bone mineral density QTL 84	4.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	8	42692684	50095447	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088624	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	46531722	99083736	Rat

Markers in Region

D8Rat63

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	47,872,069 - 47,872,172 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	51,883,143 - 51,883,245	NCBI	Rnor6.0
Rnor_5.0	8	50,484,989 - 50,485,091	UniSTS	Rnor5.0
RGSC_v3.4	8	50,795,357 - 50,795,769	RGD	RGSC3.4
RGSC_v3.4	8	50,795,415 - 50,795,517	UniSTS	RGSC3.4
RGSC_v3.1	8	50,814,469 - 50,814,571	RGD
Celera	8	47,445,625 - 47,445,727	UniSTS
RH 3.4 Map	8	492.4	RGD
RH 3.4 Map	8	492.4	UniSTS
SHRSP x BN Map	8	36.96	UniSTS
SHRSP x BN Map	8	36.96	RGD
FHH x ACI Map	8	40.27	RGD
Cytogenetic Map	8	q23	UniSTS

BF402666

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	48,158,092 - 48,158,326 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	52,171,436 - 52,171,669	NCBI	Rnor6.0
Rnor_5.0	8	50,771,166 - 50,771,399	UniSTS	Rnor5.0
RGSC_v3.4	8	51,091,131 - 51,091,364	UniSTS	RGSC3.4
Celera	8	47,722,072 - 47,722,305	UniSTS
RH 3.4 Map	8	495.3	UniSTS
Cytogenetic Map	8	q23	UniSTS

RH126999

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	48,109,311 - 48,109,534 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	52,122,654 - 52,122,876	NCBI	Rnor6.0
Rnor_5.0	8	50,722,384 - 50,722,606	UniSTS	Rnor5.0
Celera	8	47,673,285 - 47,673,507	UniSTS
Cytogenetic Map	8	q23	UniSTS

RH141584

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RH 3.4 Map	8	469.3	UniSTS
Cytogenetic Map	8	q23	UniSTS

AW529685

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	48,159,582 - 48,159,743 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	52,172,925 - 52,173,085	NCBI	Rnor6.0
Rnor_5.0	8	50,772,655 - 50,772,815	UniSTS	Rnor5.0
RGSC_v3.4	8	51,092,620 - 51,092,780	UniSTS	RGSC3.4
Celera	8	47,723,561 - 47,723,721	UniSTS
RH 3.4 Map	8	469.8	UniSTS
Cytogenetic Map	8	q23	UniSTS

RH144465

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	47,846,809 - 47,846,966 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	51,857,880 - 51,858,036	NCBI	Rnor6.0
Rnor_5.0	8	50,459,726 - 50,459,882	UniSTS	Rnor5.0
RGSC_v3.4	8	50,764,618 - 50,764,774	UniSTS	RGSC3.4
Celera	8	47,420,372 - 47,420,528	UniSTS
RH 3.4 Map	8	469.9	UniSTS
Cytogenetic Map	8	q23	UniSTS

AI412733

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	48,156,853 - 48,157,013 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	52,170,197 - 52,170,356	NCBI	Rnor6.0
Rnor_5.0	8	50,769,927 - 50,770,086	UniSTS	Rnor5.0
RGSC_v3.4	8	51,089,892 - 51,090,051	UniSTS	RGSC3.4
Celera	8	47,720,833 - 47,720,992	UniSTS
RH 3.4 Map	8	469.6	UniSTS
Cytogenetic Map	8	q23	UniSTS

RH136632

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	48,175,873 - 48,176,062 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	52,189,216 - 52,189,404	NCBI	Rnor6.0
Rnor_5.0	8	50,788,946 - 50,789,134	UniSTS	Rnor5.0
RGSC_v3.4	8	51,108,911 - 51,109,099	UniSTS	RGSC3.4
Celera	8	47,739,846 - 47,740,034	UniSTS
Cytogenetic Map	8	q23	UniSTS

Genetic Models

This gene Cadm1 is modified in the following models/strains

F344-Cadm1^{Tn(sb-T2/Bart3)2.229Mcwi}

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		10	28	16	15	16			74	22	38	11
Low	3	31	21	17	4	17	8	10		13	3		8
Below cutoff		2	8	8		8		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001839195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001839196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001839197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB114443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB257090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB257091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000052392 ⟹ ENSRNOP00000041169

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	47,847,325 - 48,176,381 (+)	Ensembl
Rnor_6.0 Ensembl	8	52,127,399 - 52,189,722 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079797 ⟹ ENSRNOP00000069217

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	47,847,325 - 48,176,381 (+)	Ensembl
Rnor_6.0 Ensembl	8	52,127,632 - 52,189,699 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097876 ⟹ ENSRNOP00000092150

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	47,847,325 - 48,159,407 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102618 ⟹ ENSRNOP00000076752

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	47,847,958 - 48,182,833 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110628 ⟹ ENSRNOP00000081058

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	47,847,325 - 48,178,652 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115996 ⟹ ENSRNOP00000096807

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	47,847,325 - 48,178,652 (+)	Ensembl

RefSeq Acc Id:

NM_001012201 ⟹ NP_001012201

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	47,847,836 - 48,175,925 (+)	NCBI
Rnor_6.0	8	51,858,906 - 52,189,267 (+)	NCBI
Rnor_5.0	8	50,460,752 - 50,796,128 (+)	NCBI
RGSC_v3.4	8	50,765,645 - 51,108,962 (+)	RGD
Celera	8	47,421,398 - 47,739,897 (+)	RGD

Sequence:

show sequence

GGGTGGGGGAGGGGGGCTAGTCCTCTGAGAGCTGGGTTGGGCTCGCGGTGCCACGATTGGTCGC
TCCCGACTCCGCCTTCACCGCATCTCATTAGCATCTCATTAGCTGTCCGCTCGGGCTCGGGAGG
CAGCCACCGCTGCCAGTCTGAGGCAGGTGCCCGACATGGCGAGTCCTGTGCTGCCGAGCGGATC
CCAGTGTGCGGCGGCAGCGGCTGTGGCGGCGGCGGCGGCGCCTCCAGGGCTCCGGCTCCGGCTC
CTGCTGTTGCTCCTCTCGGCCGCGGCACTGATCCCCACAGGTGATGGGCAGAATCTGTTTACTA
AGGACGTGACGGTGATTGAAGGAGAAGTTGCAACCATCAGCTGTCAAGTCAATAAGAGTGATGA
CTCCGTGATTCAGCTACTGAACCCCAACAGGCAGACCATTTACTTCAGGGACTTCAGGCCTTTG
AAGGACAGCAGGTTTCAGCTGCTGAATTTTTCTAGCAGTGAACTCAAAGTGTCACTGACAAATG
TCTCAATTTCGGATGAAGGGAGGTACTTCTGCCAGCTCTACACGGACCCTCCGCAGGAGAGTTA
TACCACCATCACAGTCCTGGTCCCTCCACGTAACTTGATGATCGATATCCAGAAAGACACGGCA
GTTGAAGGGGAGGAGATTGAAGTCAACTGCACGGCCATGGCCAGCAAGCCGGCTACGACCATCA
GGTGGTTCAAAGGGAACAAGGAACTCAAAGGCAAATCAGAGGTGGAAGAGTGGTCGGACATGTA
CACTGTGACCAGTCAGCTGATGCTGAAGGTGCACAAGGAGGATGATGGAGTCCCAGTGATCTGC
CAGGTGGAGCACCCTGCGGTCACTGGAAACCTGCAGACCCAGCGGTATCTAGAAGTGCAGTATA
AACCGCAAGTGCAGATCCAGATGACTTATCCTCTGCAAGGCCTAACCCGGGAAGGGGATGCATT
CGAGTTAACGTGTGAAGCCACCGGGAAGCCCCAGCCTGTGATGGTAACTTGGGTGAGAGTCGAT
GACGAAATGCCTCAACATGCCGTTCTGTCTGGGCCGAATCTGTTCATCAATAACCTAAACAAAA
CAGACAATGGTACTTACCGCTGTGAGGCTTCCAACACAGTGGGGAAAGCTCATTCGGACTATAT
GCTGTATGTATACGATCCCCCCACAACTATCCCTCCTCCCACAACAACCACCACCACCACTACC
ACCACCACCACCACCACCACCATCCTTACCATCATCACAGACACCACGGCGACGACAGAACCAG
CAGTTCACGGCCTTACTCAGTTGCCCAATTCCGCAGAAGAACTGGACAGTGAGGATCTCTCAGA
TTCTCGAGCAGGTGAAGAGGGCGCCATTGGGGCAGTGGACCACGCGGTGATTGGCGGCGTCGTA
GCCGTGGTGGTGTTTGCCATGCTATGTTTGCTCATCATTCTGGGCCGCTATTTTGCCAGACATA
AAGGTACATACTTCACTCATGAAGCCAAAGGAGCCGATGACGCAGCAGACGCAGACACAGCTAT
AATCAATGCAGAAGGAGGACAGAACAACTCCGAAGAAAAGAAAGAGTACTTCATCTAGATCAGC
CTTTTTGTTCCAATGAGGTGTCCAACGGGCCTGCTTAGATGATAAAGAGACAGTGATACTGGAA
CTTTGGAGAAGCTCGTGTGGTTTTTTTTTATGAGTGGGTGGAAAGATGCGAGACTGGGAAGGCT
TGGGATTTGCAATGTAAAAACAAAGACAAAAAATGTTCTTTGAAAGTAAAAAAAAAAAAAAAAA
AAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242944 ⟹ XP_006243006

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	47,847,837 - 48,178,703 (+)	NCBI
Rnor_6.0	8	51,858,912 - 52,189,716 (+)	NCBI
Rnor_5.0	8	50,460,752 - 50,796,128 (+)	NCBI

Sequence:

show sequence

GGGAGGGGGGCTAGTCCTCTGAGAGCTGGGTTGGGCTCGCGGTGCCACGATTGGTCGCTCCCGA
CTCCGCCTTCACCGCATCTCATTAGCATCTCATTAGCTGTCCGCTCGGGCTCGGGAGGCAGCCA
CCGCTGCCAGTCTGAGGCAGGTGCCCGACATGGCGAGTCCTGTGCTGCCGAGCGGATCCCAGTG
TGCGGCGGCAGCGGCTGTGGCGGCGGCGGCGGCGCCTCCAGGGCTCCGGCTCCGGCTCCTGCTG
TTGCTCCTCTCGGCCGCGGCACTGATCCCCACAGGTGATGGGCAGAATCTGTTTACTAAGGACG
TGACGGTGATTGAAGGAGAAGTTGCAACCATCAGCTGTCAAGTCAATAAGAGTGATGACTCCGT
GATTCAGCTACTGAACCCCAACAGGCAGACCATTTACTTCAGGGACTTCAGGCCTTTGAAGGAC
AGCAGGTTTCAGCTGCTGAATTTTTCTAGCAGTGAACTCAAAGTGTCACTGACAAATGTCTCAA
TTTCGGATGAAGGGAGGTACTTCTGCCAGCTCTACACGGACCCTCCGCAGGAGAGTTATACCAC
CATCACAGTCCTGGTCCCTCCACGTAACTTGATGATCGATATCCAGAAAGACACGGCAGTTGAA
GGGGAGGAGATTGAAGTCAACTGCACGGCCATGGCCAGCAAGCCGGCTACGACCATCAGGTGGT
TCAAAGGGAACAAGGAACTCAAAGGCAAATCAGAGGTGGAAGAGTGGTCGGACATGTACACTGT
GACCAGTCAGCTGATGCTGAAGGTGCACAAGGAGGATGATGGAGTCCCAGTGATCTGCCAGGTG
GAGCACCCTGCGGTCACTGGAAACCTGCAGACCCAGCGGTATCTAGAAGTGCAGTATAAACCGC
AAGTGCAGATCCAGATGACTTATCCTCTGCAAGGCCTAACCCGGGAAGGGGATGCATTCGAGTT
AACGTGTGAAGCCACCGGGAAGCCCCAGCCTGTGATGGTAACTTGGGTGAGAGTCGATGACGAA
ATGCCTCAACATGCCGTTCTGTCTGGGCCGAATCTGTTCATCAATAACCTAAACAAAACAGACA
ATGGTACTTACCGCTGTGAGGCTTCCAACACAGTGGGGAAAGCTCATTCGGACTATATGCTGTA
TGTATACGATCCCCCCACAACTATCCCTCCTCCCACAACAACCACCACCACCACTACCACCACC
ACCACCACCACCACCATCCTTACCATCATCACAGACACCACGGCGACGACAGAACCAGCAGTTC
ACGATTCTCGAGCAGGTGAAGAGGGCGCCATTGGGGCAGTGGACCACGCGGTGATTGGCGGCGT
CGTAGCCGTGGTGGTGTTTGCCATGCTATGTTTGCTCATCATTCTGGGCCGCTATTTTGCCAGA
CATAAAGGTACATACTTCACTCATGAAGCCAAAGGAGCCGATGACGCAGCAGACGCAGACACAG
CTATAATCAATGCAGAAGGAGGACAGAACAACTCCGAAGAAAAGAAAGAGTACTTCATCTAGAT
CAGCCTTTTTGTTCCAATGAGGTGTCCAACGGGCCTGCTTAGATGATAAAGAGACAGTGATACT
GGAACTTTGGAGAAGCTCGTGTGGTTTTTTTTTTATGAGTGGGTGGAAAGATGCGAGACTGGGA
AGGCTTGGGATTTGCAATGTAAAAACAAAGACAAAAAATGTTCTTTGAAAGTACGCTCTGCTGT
TTGACACCTCTTTTTAATCTGGTTTTAATTTGGTTTGGGTTTTGGTGTTTTCGTTTCTATTTCC
TCCTACCAAGTCAAACTTGGGTACTTGGATTTGGTTTCGGTAGATTGCAGAAAATTCTGTGCCT
TGTTTTTCATTCGTTTGTTGGTTTCTTTCCCCTTGCCCTTTTTGTGCATTTATTTTTCCCAAAA
TCAAATTTGTTTTTCCCCCCCTCCCAAACCTCCCATTTTTTGGAATTGACCTGCTGGGATTCCT
AAGATTCCCCCCCCCACCCCATTTCTGATTTCTTTGTTTGTGTTGACGGTGACTGCTTTCTGTT
CCAAATTCAGTTTCATAAAAGGAAAACCAGCACAGTTTAGATTTCATAGTTCAGAATTTAGTGT
CTCCATGATGCATCCTTCTCTGTTGTCGTAAAGATTTGGGTGAACTAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242946 ⟹ XP_006243008

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	47,847,837 - 48,178,703 (+)	NCBI
Rnor_6.0	8	51,858,912 - 52,189,716 (+)	NCBI
Rnor_5.0	8	50,460,752 - 50,796,128 (+)	NCBI

Sequence:

show sequence

GGGAGGGGGGCTAGTCCTCTGAGAGCTGGGTTGGGCTCGCGGTGCCACGATTGGTCGCTCCCGA
CTCCGCCTTCACCGCATCTCATTAGCATCTCATTAGCTGTCCGCTCGGGCTCGGGAGGCAGCCA
CCGCTGCCAGTCTGAGGCAGGTGCCCGACATGGCGAGTCCTGTGCTGCCGAGCGGATCCCAGTG
TGCGGCGGCAGCGGCTGTGGCGGCGGCGGCGGCGCCTCCAGGGCTCCGGCTCCGGCTCCTGCTG
TTGCTCCTCTCGGCCGCGGCACTGATCCCCACAGGTGATGGGCAGAATCTGTTTACTAAGGACG
TGACGGTGATTGAAGGAGAAGTTGCAACCATCAGCTGTCAAGTCAATAAGAGTGATGACTCCGT
GATTCAGCTACTGAACCCCAACAGGCAGACCATTTACTTCAGGGACTTCAGGCCTTTGAAGGAC
AGCAGGTTTCAGCTGCTGAATTTTTCTAGCAGTGAACTCAAAGTGTCACTGACAAATGTCTCAA
TTTCGGATGAAGGGAGGTACTTCTGCCAGCTCTACACGGACCCTCCGCAGGAGAGTTATACCAC
CATCACAGTCCTGGTCCCTCCACGTAACTTGATGATCGATATCCAGAAAGACACGGCAGTTGAA
GGGGAGGAGATTGAAGTCAACTGCACGGCCATGGCCAGCAAGCCGGCTACGACCATCAGGTGGT
TCAAAGGGAACAAGGAACTCAAAGGCAAATCAGAGGTGGAAGAGTGGTCGGACATGTACACTGT
GACCAGTCAGCTGATGCTGAAGGTGCACAAGGAGGATGATGGAGTCCCAGTGATCTGCCAGGTG
GAGCACCCTGCGGTCACTGGAAACCTGCAGACCCAGCGGTATCTAGAAGTGCAGTATAAACCGC
AAGTGCAGATCCAGATGACTTATCCTCTGCAAGGCCTAACCCGGGAAGGGGATGCATTCGAGTT
AACGTGTGAAGCCACCGGGAAGCCCCAGCCTGTGATGGTAACTTGGGTGAGAGTCGATGACGAA
ATGCCTCAACATGCCGTTCTGTCTGGGCCGAATCTGTTCATCAATAACCTAAACAAAACAGACA
ATGGTACTTACCGCTGTGAGGCTTCCAACACAGTGGGGAAAGCTCATTCGGACTATATGCTGTA
TGTATACGACACCACGGCGACGACAGAACCAGCAGTTCACGGCCTTACTCAGTTGCCCAATTCC
GCAGAAGAACTGGACAGTGAGGATCTCTCAGATTCTCGAGCAGGTGAAGAGGGCGCCATTGGGG
CAGTGGACCACGCGGTGATTGGCGGCGTCGTAGCCGTGGTGGTGTTTGCCATGCTATGTTTGCT
CATCATTCTGGGCCGCTATTTTGCCAGACATAAAGGTACATACTTCACTCATGAAGCCAAAGGA
GCCGATGACGCAGCAGACGCAGACACAGCTATAATCAATGCAGAAGGAGGACAGAACAACTCCG
AAGAAAAGAAAGAGTACTTCATCTAGATCAGCCTTTTTGTTCCAATGAGGTGTCCAACGGGCCT
GCTTAGATGATAAAGAGACAGTGATACTGGAACTTTGGAGAAGCTCGTGTGGTTTTTTTTTTAT
GAGTGGGTGGAAAGATGCGAGACTGGGAAGGCTTGGGATTTGCAATGTAAAAACAAAGACAAAA
AATGTTCTTTGAAAGTACGCTCTGCTGTTTGACACCTCTTTTTAATCTGGTTTTAATTTGGTTT
GGGTTTTGGTGTTTTCGTTTCTATTTCCTCCTACCAAGTCAAACTTGGGTACTTGGATTTGGTT
TCGGTAGATTGCAGAAAATTCTGTGCCTTGTTTTTCATTCGTTTGTTGGTTTCTTTCCCCTTGC
CCTTTTTGTGCATTTATTTTTCCCAAAATCAAATTTGTTTTTCCCCCCCTCCCAAACCTCCCAT
TTTTTGGAATTGACCTGCTGGGATTCCTAAGATTCCCCCCCCCACCCCATTTCTGATTTCTTTG
TTTGTGTTGACGGTGACTGCTTTCTGTTCCAAATTCAGTTTCATAAAAGGAAAACCAGCACAGT
TTAGATTTCATAGTTCAGAATTTAGTGTCTCCATGATGCATCCTTCTCTGTTGTCGTAAAGATT
TGGGTGAACTAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242947 ⟹ XP_006243009

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	47,847,837 - 48,178,703 (+)	NCBI
Rnor_6.0	8	51,858,912 - 52,189,716 (+)	NCBI
Rnor_5.0	8	50,460,752 - 50,796,128 (+)	NCBI

Sequence:

show sequence

GGGAGGGGGGCTAGTCCTCTGAGAGCTGGGTTGGGCTCGCGGTGCCACGATTGGTCGCTCCCGA
CTCCGCCTTCACCGCATCTCATTAGCATCTCATTAGCTGTCCGCTCGGGCTCGGGAGGCAGCCA
CCGCTGCCAGTCTGAGGCAGGTGCCCGACATGGCGAGTCCTGTGCTGCCGAGCGGATCCCAGTG
TGCGGCGGCAGCGGCTGTGGCGGCGGCGGCGGCGCCTCCAGGGCTCCGGCTCCGGCTCCTGCTG
TTGCTCCTCTCGGCCGCGGCACTGATCCCCACAGGTGATGGGCAGAATCTGTTTACTAAGGACG
TGACGGTGATTGAAGGAGAAGTTGCAACCATCAGCTGTCAAGTCAATAAGAGTGATGACTCCGT
GATTCAGCTACTGAACCCCAACAGGCAGACCATTTACTTCAGGGACTTCAGGCCTTTGAAGGAC
AGCAGGTTTCAGCTGCTGAATTTTTCTAGCAGTGAACTCAAAGTGTCACTGACAAATGTCTCAA
TTTCGGATGAAGGGAGGTACTTCTGCCAGCTCTACACGGACCCTCCGCAGGAGAGTTATACCAC
CATCACAGTCCTGGTCCCTCCACGTAACTTGATGATCGATATCCAGAAAGACACGGCAGTTGAA
GGGGAGGAGATTGAAGTCAACTGCACGGCCATGGCCAGCAAGCCGGCTACGACCATCAGGTGGT
TCAAAGGGAACAAGGAACTCAAAGGCAAATCAGAGGTGGAAGAGTGGTCGGACATGTACACTGT
GACCAGTCAGCTGATGCTGAAGGTGCACAAGGAGGATGATGGAGTCCCAGTGATCTGCCAGGTG
GAGCACCCTGCGGTCACTGGAAACCTGCAGACCCAGCGGTATCTAGAAGTGCAGTATAAACCGC
AAGTGCAGATCCAGATGACTTATCCTCTGCAAGGCCTAACCCGGGAAGGGGATGCATTCGAGTT
AACGTGTGAAGCCACCGGGAAGCCCCAGCCTGTGATGGTAACTTGGGTGAGAGTCGATGACGAA
ATGCCTCAACATGCCGTTCTGTCTGGGCCGAATCTGTTCATCAATAACCTAAACAAAACAGACA
ATGGTACTTACCGCTGTGAGGCTTCCAACACAGTGGGGAAAGCTCATTCGGACTATATGCTGTA
TGTATACGACACCACGGCGACGACAGAACCAGCAGTTCACGATTCTCGAGCAGGTGAAGAGGGC
GCCATTGGGGCAGTGGACCACGCGGTGATTGGCGGCGTCGTAGCCGTGGTGGTGTTTGCCATGC
TATGTTTGCTCATCATTCTGGGCCGCTATTTTGCCAGACATAAAGGTACATACTTCACTCATGA
AGCCAAAGGAGCCGATGACGCAGCAGACGCAGACACAGCTATAATCAATGCAGAAGGAGGACAG
AACAACTCCGAAGAAAAGAAAGAGTACTTCATCTAGATCAGCCTTTTTGTTCCAATGAGGTGTC
CAACGGGCCTGCTTAGATGATAAAGAGACAGTGATACTGGAACTTTGGAGAAGCTCGTGTGGTT
TTTTTTTTATGAGTGGGTGGAAAGATGCGAGACTGGGAAGGCTTGGGATTTGCAATGTAAAAAC
AAAGACAAAAAATGTTCTTTGAAAGTACGCTCTGCTGTTTGACACCTCTTTTTAATCTGGTTTT
AATTTGGTTTGGGTTTTGGTGTTTTCGTTTCTATTTCCTCCTACCAAGTCAAACTTGGGTACTT
GGATTTGGTTTCGGTAGATTGCAGAAAATTCTGTGCCTTGTTTTTCATTCGTTTGTTGGTTTCT
TTCCCCTTGCCCTTTTTGTGCATTTATTTTTCCCAAAATCAAATTTGTTTTTCCCCCCCTCCCA
AACCTCCCATTTTTTGGAATTGACCTGCTGGGATTCCTAAGATTCCCCCCCCCACCCCATTTCT
GATTTCTTTGTTTGTGTTGACGGTGACTGCTTTCTGTTCCAAATTCAGTTTCATAAAAGGAAAA
CCAGCACAGTTTAGATTTCATAGTTCAGAATTTAGTGTCTCCATGATGCATCCTTCTCTGTTGT
CGTAAAGATTTGGGTGAACTAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242948 ⟹ XP_006243010

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	47,847,837 - 48,178,703 (+)	NCBI
Rnor_6.0	8	51,858,912 - 52,189,716 (+)	NCBI
Rnor_5.0	8	50,460,752 - 50,796,128 (+)	NCBI

Sequence:

show sequence

GGGAGGGGGGCTAGTCCTCTGAGAGCTGGGTTGGGCTCGCGGTGCCACGATTGGTCGCTCCCGA
CTCCGCCTTCACCGCATCTCATTAGCATCTCATTAGCTGTCCGCTCGGGCTCGGGAGGCAGCCA
CCGCTGCCAGTCTGAGGCAGGTGCCCGACATGGCGAGTCCTGTGCTGCCGAGCGGATCCCAGTG
TGCGGCGGCAGCGGCTGTGGCGGCGGCGGCGGCGCCTCCAGGGCTCCGGCTCCGGCTCCTGCTG
TTGCTCCTCTCGGCCGCGGCACTGATCCCCACAGGTGATGGGCAGAATCTGTTTACTAAGGACG
TGACGGTGATTGAAGGAGAAGTTGCAACCATCAGCTGTCAAGTCAATAAGAGTGATGACTCCGT
GATTCAGCTACTGAACCCCAACAGGCAGACCATTTACTTCAGGGACTTCAGGCCTTTGAAGGAC
AGCAGGTTTCAGCTGCTGAATTTTTCTAGCAGTGAACTCAAAGTGTCACTGACAAATGTCTCAA
TTTCGGATGAAGGGAGGTACTTCTGCCAGCTCTACACGGACCCTCCGCAGGAGAGTTATACCAC
CATCACAGTCCTGGTCCCTCCACGTAACTTGATGATCGATATCCAGAAAGACACGGCAGTTGAA
GGGGAGGAGATTGAAGTCAACTGCACGGCCATGGCCAGCAAGCCGGCTACGACCATCAGGTGGT
TCAAAGGGAACAAGGAACTCAAAGGCAAATCAGAGGTGGAAGAGTGGTCGGACATGTACACTGT
GACCAGTCAGCTGATGCTGAAGGTGCACAAGGAGGATGATGGAGTCCCAGTGATCTGCCAGGTG
GAGCACCCTGCGGTCACTGGAAACCTGCAGACCCAGCGGTATCTAGAAGTGCAGTATAAACCGC
AAGTGCAGATCCAGATGACTTATCCTCTGCAAGGCCTAACCCGGGAAGGGGATGCATTCGAGTT
AACGTGTGAAGCCACCGGGAAGCCCCAGCCTGTGATGGTAACTTGGGTGAGAGTCGATGACGAA
ATGCCTCAACATGCCGTTCTGTCTGGGCCGAATCTGTTCATCAATAACCTAAACAAAACAGACA
ATGGTACTTACCGCTGTGAGGCTTCCAACACAGTGGGGAAAGCTCATTCGGACTATATGCTGTA
TGTATACGATTCTCGAGCAGGTGAAGAGGGCGCCATTGGGGCAGTGGACCACGCGGTGATTGGC
GGCGTCGTAGCCGTGGTGGTGTTTGCCATGCTATGTTTGCTCATCATTCTGGGCCGCTATTTTG
CCAGACATAAAGGTACATACTTCACTCATGAAGCCAAAGGAGCCGATGACGCAGCAGACGCAGA
CACAGCTATAATCAATGCAGAAGGAGGACAGAACAACTCCGAAGAAAAGAAAGAGTACTTCATC
TAGATCAGCCTTTTTGTTCCAATGAGGTGTCCAACGGGCCTGCTTAGATGATAAAGAGACAGTG
ATACTGGAACTTTGGAGAAGCTCGTGTGGTTTTTTTTTTATGAGTGGGTGGAAAGATGCGAGAC
TGGGAAGGCTTGGGATTTGCAATGTAAAAACAAAGACAAAAAATGTTCTTTGAAAGTACGCTCT
GCTGTTTGACACCTCTTTTTAATCTGGTTTTAATTTGGTTTGGGTTTTGGTGTTTTCGTTTCTA
TTTCCTCCTACCAAGTCAAACTTGGGTACTTGGATTTGGTTTCGGTAGATTGCAGAAAATTCTG
TGCCTTGTTTTTCATTCGTTTGTTGGTTTCTTTCCCCTTGCCCTTTTTGTGCATTTATTTTTCC
CAAAATCAAATTTGTTTTTCCCCCCCTCCCAAACCTCCCATTTTTTGGAATTGACCTGCTGGGA
TTCCTAAGATTCCCCCCCCCACCCCATTTCTGATTTCTTTGTTTGTGTTGACGGTGACTGCTTT
CTGTTCCAAATTCAGTTTCATAAAAGGAAAACCAGCACAGTTTAGATTTCATAGTTCAGAATTT
AGTGTCTCCATGATGCATCCTTCTCTGTTGTCGTAAAGATTTGGGTGAACTAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039081722 ⟹ XP_038937650

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	47,847,837 - 48,178,703 (+)	NCBI

RefSeq Acc Id:

XM_039081723 ⟹ XP_038937651

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	47,847,837 - 48,154,553 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012201	(Get FASTA)	NCBI Sequence Viewer
	XP_006243006	(Get FASTA)	NCBI Sequence Viewer
	XP_006243008	(Get FASTA)	NCBI Sequence Viewer
	XP_006243009	(Get FASTA)	NCBI Sequence Viewer
	XP_006243010	(Get FASTA)	NCBI Sequence Viewer
	XP_038937650	(Get FASTA)	NCBI Sequence Viewer
	XP_038937651	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH78966	(Get FASTA)	NCBI Sequence Viewer
	BAD21139	(Get FASTA)	NCBI Sequence Viewer
	BAE97777	(Get FASTA)	NCBI Sequence Viewer
	BAE97778	(Get FASTA)	NCBI Sequence Viewer
	EDL95408	(Get FASTA)	NCBI Sequence Viewer
	EDL95410	(Get FASTA)	NCBI Sequence Viewer
	Q6AYP5	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001012201 ⟸ NM_001012201
- Peptide Label:	precursor
- UniProtKB:	Q0WXX6 (UniProtKB/Swiss-Prot), Q6AYP5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASPVLPSGSQCAAAAAVAAAAAPPGLRLRLLLLLLSAAALIPTGDGQNLFTKDVTVIEGEVAT ISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQ LYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWFKGNKELKGK SEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHPAVTGNLQTQRYLEVQYKPQVQIQMTYPL QGLTREGDAFELTCEATGKPQPVMVTWVRVDDEMPQHAVLSGPNLFINNLNKTDNGTYRCEASN TVGKAHSDYMLYVYDPPTTIPPPTTTTTTTTTTTTTTTILTIITDTTATTEPAVHGLTQLPNSA EELDSEDLSDSRAGEEGAIGAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGA DDAADADTAIINAEGGQNNSEEKKEYFI hide sequence

RefSeq Acc Id:	XP_006243006 ⟸ XM_006242944
- Peptide Label:	isoform X1
- UniProtKB:	A0A5H1ZRU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASPVLPSGSQCAAAAAVAAAAAPPGLRLRLLLLLLSAAALIPTGDGQNLFTKDVTVIEGEVAT ISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQ LYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWFKGNKELKGK SEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHPAVTGNLQTQRYLEVQYKPQVQIQMTYPL QGLTREGDAFELTCEATGKPQPVMVTWVRVDDEMPQHAVLSGPNLFINNLNKTDNGTYRCEASN TVGKAHSDYMLYVYDPPTTIPPPTTTTTTTTTTTTTTTILTIITDTTATTEPAVHDSRAGEEGA IGAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQN NSEEKKEYFI hide sequence

RefSeq Acc Id:	XP_006243008 ⟸ XM_006242946
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6GLS0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASPVLPSGSQCAAAAAVAAAAAPPGLRLRLLLLLLSAAALIPTGDGQNLFTKDVTVIEGEVAT ISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQ LYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWFKGNKELKGK SEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHPAVTGNLQTQRYLEVQYKPQVQIQMTYPL QGLTREGDAFELTCEATGKPQPVMVTWVRVDDEMPQHAVLSGPNLFINNLNKTDNGTYRCEASN TVGKAHSDYMLYVYDTTATTEPAVHGLTQLPNSAEELDSEDLSDSRAGEEGAIGAVDHAVIGGV VAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI hide sequence

RefSeq Acc Id:

XP_006243009 ⟸ XM_006242947

- Peptide Label:

isoform X4

- Sequence:

show sequence

MASPVLPSGSQCAAAAAVAAAAAPPGLRLRLLLLLLSAAALIPTGDGQNLFTKDVTVIEGEVAT
ISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQ
LYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWFKGNKELKGK
SEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHPAVTGNLQTQRYLEVQYKPQVQIQMTYPL
QGLTREGDAFELTCEATGKPQPVMVTWVRVDDEMPQHAVLSGPNLFINNLNKTDNGTYRCEASN
TVGKAHSDYMLYVYDTTATTEPAVHDSRAGEEGAIGAVDHAVIGGVVAVVVFAMLCLLIILGRY
FARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI

hide sequence

RefSeq Acc Id:	XP_006243010 ⟸ XM_006242948
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JUT1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASPVLPSGSQCAAAAAVAAAAAPPGLRLRLLLLLLSAAALIPTGDGQNLFTKDVTVIEGEVAT ISCQVNKSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQ LYTDPPQESYTTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATTIRWFKGNKELKGK SEVEEWSDMYTVTSQLMLKVHKEDDGVPVICQVEHPAVTGNLQTQRYLEVQYKPQVQIQMTYPL QGLTREGDAFELTCEATGKPQPVMVTWVRVDDEMPQHAVLSGPNLFINNLNKTDNGTYRCEASN TVGKAHSDYMLYVYDSRAGEEGAIGAVDHAVIGGVVAVVVFAMLCLLIILGRYFARHKGTYFTH EAKGADDAADADTAIINAEGGQNNSEEKKEYFI hide sequence

RefSeq Acc Id:

ENSRNOP00000069217 ⟸ ENSRNOT00000079797

RefSeq Acc Id:

ENSRNOP00000041169 ⟸ ENSRNOT00000052392

RefSeq Acc Id:	XP_038937650 ⟸ XM_039081722
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038937651 ⟸ XM_039081723
- Peptide Label:	isoform X6

RefSeq Acc Id:

ENSRNOP00000096807 ⟸ ENSRNOT00000115996

RefSeq Acc Id:

ENSRNOP00000076752 ⟸ ENSRNOT00000102618

RefSeq Acc Id:

ENSRNOP00000081058 ⟸ ENSRNOT00000110628

RefSeq Acc Id:

ENSRNOP00000092150 ⟸ ENSRNOT00000097876

Protein Domains

Ig-like Ig-like C2-type Ig-like V-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYP5-F1-model_v2	AlphaFold	Q6AYP5	1-476	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310999	AgrOrtholog
BioCyc Gene	G2FUF-30625	BioCyc
Ensembl Genes	ENSRNOG00000018778	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000041169	ENTREZGENE
	ENSRNOP00000041169.4	UniProtKB/TrEMBL
	ENSRNOP00000069217	ENTREZGENE
	ENSRNOP00000069217.2	UniProtKB/TrEMBL
	ENSRNOP00000076752.1	UniProtKB/TrEMBL
	ENSRNOP00000081058	ENTREZGENE
	ENSRNOP00000081058.1	UniProtKB/Swiss-Prot
	ENSRNOP00000092150	ENTREZGENE
	ENSRNOP00000092150.1	UniProtKB/TrEMBL
	ENSRNOP00000096807	ENTREZGENE
	ENSRNOP00000096807.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000052392	ENTREZGENE
	ENSRNOT00000052392.4	UniProtKB/TrEMBL
	ENSRNOT00000079797	ENTREZGENE
	ENSRNOT00000079797.2	UniProtKB/TrEMBL
	ENSRNOT00000097876	ENTREZGENE
	ENSRNOT00000097876.1	UniProtKB/TrEMBL
	ENSRNOT00000102618.1	UniProtKB/TrEMBL
	ENSRNOT00000110628	ENTREZGENE
	ENSRNOT00000110628.1	UniProtKB/Swiss-Prot
	ENSRNOT00000115996	ENTREZGENE
	ENSRNOT00000115996.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7111523	IMAGE-MGC_LOAD
InterPro	CD80_C2-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_sub	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Myelin_P0-rel	UniProtKB/TrEMBL
	Neurexin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:363058	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93845	IMAGE-MGC_LOAD
NCBI Gene	363058	ENTREZGENE
PANTHER	CELL ADHESION MOLECULE 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	IG-LIKE DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	C2-set_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	V-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cadm1	PhenoGen
PRINTS	MYELINP0	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	4.1m	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	IGc2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SM00409	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JUT1	ENTREZGENE, UniProtKB/TrEMBL
	A0A5H1ZRU4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y709_RAT	UniProtKB/TrEMBL
	A0A8I6AHK7_RAT	UniProtKB/TrEMBL
	A0A8I6GLS0	ENTREZGENE, UniProtKB/TrEMBL
	CADM1_RAT	UniProtKB/Swiss-Prot
	Q0WXX6	ENTREZGENE
	Q6AYP5	ENTREZGENE
UniProt Secondary	F7EYW4	UniProtKB/Swiss-Prot
	Q0WXX6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-01-21	Cadm1	cell adhesion molecule 1	Igsf4a	immunoglobulin superfamily, member 4A	Symbol and Name updated to reflect Human and Mouse nomenclature	1299863	APPROVED
2005-12-06	Igsf4a	immunoglobulin superfamily, member 4A	Igsf4a_predicted	immunoglobulin superfamily, member 4A (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Igsf4a_predicted	immunoglobulin superfamily, member 4A (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD