Cadm1 (cell adhesion molecule 1) - Rat Genome Database

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Gene: Cadm1 (cell adhesion molecule 1) Heterocephalus glaber
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Symbol: Cadm1
Name: cell adhesion molecule 1
RGD ID: 18916955
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); PDZ domain binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN activated T cell proliferation (ortholog); bone development (ortholog); calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules (ortholog); ASSOCIATED WITH autistic disorder (ortholog); breast carcinoma (ortholog); Breast Neoplasms (ortholog); FOUND IN axon (ortholog); basolateral plasma membrane (ortholog); cell-cell junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478410,591,824 - 10,932,981 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478410,595,876 - 10,933,024 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Cadm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478410,591,824 - 10,932,981 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478410,595,876 - 10,933,024 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CADM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811115,169,236 - 115,504,415 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11115,169,218 - 115,504,957 (-)EnsemblGRCh38hg38GRCh38
GRCh3711115,039,956 - 115,375,133 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611114,549,555 - 114,880,451 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411114,550,226 - 114,880,325NCBI
Celera11112,198,721 - 112,530,558 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11110,977,380 - 111,307,896 (-)NCBIHuRef
CHM1_111114,927,793 - 115,258,644 (-)NCBICHM1_1
T2T-CHM13v2.011115,182,091 - 115,517,534 (-)NCBIT2T-CHM13v2.0
Cadm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39947,441,468 - 47,773,578 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl947,441,471 - 47,769,413 (+)EnsemblGRCm39 Ensembl
GRCm38947,530,170 - 47,862,280 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl947,530,173 - 47,857,637 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl947,530,173 - 47,858,115 (+)EnsemblGRCm38mm10GRCm38
MGSCv37947,338,435 - 47,661,468 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36947,281,347 - 47,604,379 (+)NCBIMGSCv36mm8
Celera944,821,429 - 45,143,180 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map925.83NCBI
Cadm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8856,744,374 - 57,075,264 (+)NCBIGRCr8
mRatBN7.2847,847,836 - 48,178,703 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl847,847,325 - 48,182,833 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx853,352,549 - 53,672,383 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0851,631,357 - 51,951,198 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0849,495,629 - 49,815,471 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0851,858,906 - 52,200,591 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl852,127,399 - 52,189,722 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0850,460,752 - 50,796,128 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4850,765,645 - 51,108,962 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1850,784,698 - 51,128,015 (+)NCBI
Celera847,421,398 - 47,739,897 (+)NCBICelera
Cytogenetic Map8q23NCBI
Cadm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541216,669,099 - 17,005,014 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541216,673,401 - 17,005,082 (-)NCBIChiLan1.0ChiLan1.0
CADM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29115,873,383 - 116,213,048 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111116,974,841 - 117,314,496 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011110,008,314 - 110,347,876 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111113,950,291 - 114,280,453 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11113,950,291 - 114,280,324 (-)Ensemblpanpan1.1panPan2
CADM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1517,865,317 - 18,190,855 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl517,864,453 - 18,194,694 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha517,790,071 - 18,115,562 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0517,811,250 - 18,138,114 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1517,950,729 - 18,276,001 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0517,853,222 - 18,178,288 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0517,896,857 - 18,222,408 (+)NCBIUU_Cfam_GSD_1.0
Cadm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494797,639,469 - 97,962,796 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936542565,843 - 883,609 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936542569,739 - 883,738 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CADM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl942,644,431 - 42,985,017 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1942,644,487 - 42,984,934 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2947,728,189 - 47,771,865 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CADM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11106,539,262 - 106,876,397 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1106,539,136 - 106,606,637 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604319,155,896 - 19,490,046 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000021290   ⟹   ENSHGLP00000021087
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478410,591,824 - 10,932,981 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000021291   ⟹   ENSHGLP00000021088
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478410,598,745 - 10,932,981 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000021292   ⟹   ENSHGLP00000021089
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478410,598,745 - 10,932,981 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000021293   ⟹   ENSHGLP00000021090
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478410,598,745 - 10,932,981 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000021294   ⟹   ENSHGLP00000021091
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478410,598,745 - 10,932,981 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000021295   ⟹   ENSHGLP00000021092
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478410,598,745 - 10,932,981 (-)Ensembl
RefSeq Acc Id: XM_004856630   ⟹   XP_004856687
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478410,595,876 - 10,933,023 (-)NCBI
RefSeq Acc Id: XM_004856631   ⟹   XP_004856688
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478410,595,876 - 10,933,021 (-)NCBI
RefSeq Acc Id: XM_004856632   ⟹   XP_004856689
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478410,595,876 - 10,933,024 (-)NCBI
RefSeq Acc Id: XM_004856633   ⟹   XP_004856690
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478410,595,876 - 10,933,020 (-)NCBI
RefSeq Acc Id: XM_004856634   ⟹   XP_004856691
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478410,595,876 - 10,933,022 (-)NCBI
RefSeq Acc Id: XM_004856635   ⟹   XP_004856692
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478410,595,876 - 10,933,022 (-)NCBI
RefSeq Acc Id: XP_004856689   ⟸   XM_004856632
- Peptide Label: isoform X3
- UniProtKB: G5BXZ5 (UniProtKB/TrEMBL),   A0AAX6PR23 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856687   ⟸   XM_004856630
- Peptide Label: isoform X1
- UniProtKB: G5BXZ5 (UniProtKB/TrEMBL),   A0AAX6PQ81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856692   ⟸   XM_004856635
- Peptide Label: isoform X6
- UniProtKB: A0A0P6J704 (UniProtKB/TrEMBL),   G5BXZ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856691   ⟸   XM_004856634
- Peptide Label: isoform X5
- UniProtKB: G5BXZ5 (UniProtKB/TrEMBL),   A0AAX6PQA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856688   ⟸   XM_004856631
- Peptide Label: isoform X2
- UniProtKB: G5BXZ5 (UniProtKB/TrEMBL),   A0AAX6PQH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856690   ⟸   XM_004856633
- Peptide Label: isoform X4
- UniProtKB: G5BXZ5 (UniProtKB/TrEMBL),   A0AAX6PPB5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000021088   ⟸   ENSHGLT00000021291
Ensembl Acc Id: ENSHGLP00000021090   ⟸   ENSHGLT00000021293
Ensembl Acc Id: ENSHGLP00000021091   ⟸   ENSHGLT00000021294
Ensembl Acc Id: ENSHGLP00000021087   ⟸   ENSHGLT00000021290
Ensembl Acc Id: ENSHGLP00000021089   ⟸   ENSHGLT00000021292
Ensembl Acc Id: ENSHGLP00000021092   ⟸   ENSHGLT00000021295


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015066 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000021291 ENTREZGENE
  ENSHGLT00000021292 ENTREZGENE
  ENSHGLT00000021293 ENTREZGENE
  ENSHGLT00000021294 ENTREZGENE
  ENSHGLT00000021295 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Neurexin-like UniProtKB/TrEMBL
NCBI Gene Cadm1 ENTREZGENE
PANTHER CELL ADHESION MOLECULE 1 UniProtKB/TrEMBL
  IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam C2-set_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART 4.1m UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0P6J704 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PPB5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PQ81 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PQA4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PQH3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PR23 ENTREZGENE, UniProtKB/TrEMBL
  G5BXZ5 ENTREZGENE, UniProtKB/TrEMBL