Bmd84 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bmd84 (Bone mineral density QTL 84) Rattus norvegicus

Symbol: Bmd84
Name: Bone mineral density QTL 84
RGD ID: 5684993
Trait: tibia mineral mass   (VT:1000283)    
Measurement Type: bone mineral content   (CMO:0001554)    
LOD Score: 4.1
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0846,588,437 - 54,065,241RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0845,061,464 - 52,686,094RGDRnor5.0
RGSC_v3.4845,291,674 - 53,049,477RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: GK/KyoSwe F344/DuCrlSwe 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
F344/DuCrlSwe  (IEA)
GK/KyoSwe  (IEA)

References

References - curated
1. Lagerholm S, etal., PLoS One. 2011;6(7):e22462. Epub 2011 Jul 27.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2520Drd2dopamine receptor D285367877753743643Rat
3860Thy1Thy-1 cell surface antigen84838212148387271Rat
2304Cd3dCD3d molecule84928250249287095Rat
2173Fxyd2FXYD domain-containing ion transport regulator 284971033449717492Rat
2191Bace1beta-secretase 185014009250162388Rat
3275Pcsk7proprotein convertase subtilisin/kexin type 785020006950222655Rat
61831Trehtrehalase84898380248998072Rat
69315Fxyd6FXYD domain-containing ion transport regulator 684967652049703419Rat
61820Htr3b5-hydroxytryptamine receptor 3B85324788153278170Rat
2801Hmbshydroxymethylbilane synthase84866727848674673Rat
70903Apoa5apolipoprotein A585055907950561720Rat
2136Apoc3apolipoprotein C385052931850531498Rat
62066Slc37a4solute carrier family 37 member 484871691448723024Rat
67378Ncam1neural cell adhesion molecule 185383679754134881Rat
631404Scn4bsodium voltage-gated channel beta subunit 484944110649456279Rat
61818Htr3a5-hydroxytryptamine receptor 3A85321143653223878Rat
727921Zbtb16zinc finger and BTB domain containing 1685298022653146765Rat
621691Pou2f3POU class 2 homeobox 384741206347495042Rat
621146Hyou1hypoxia up-regulated 184869979648711912Rat
620138Il10rainterleukin 10 receptor subunit alpha84955806249573891Rat
620463Mcammelanoma cell adhesion molecule84847282448481005Rat
621043Rps25ribosomal protein s2584872734648729722Rat
1303264Ttc12tetratricopeptide repeat domain 1285377068553818873Rat
2132Apoa4apolipoprotein A485053698350539371Rat
3723Taglntransgelin85022289550228369Rat
1304874Rexo2RNA exonuclease 285280260452814321Rat
2130Apoa1apolipoprotein A185052509150526875Rat
62010Cxcr5C-X-C motif chemokine receptor 584883568848852032Rat
620332Pafah1b2platelet-activating factor acetylhydrolase 1b, catalytic subunit 285025696950310043Rat
620878Phldb1pleckstrin homology-like domain, family B, member 184899718949045176Rat
620791Nectin1nectin cell adhesion molecule 184809423348198499Rat
628625Tmprss5transmembrane serine protease 585341125953430744Rat
735124Dpagt1dolichyl-phosphate N-acetylglucosaminephosphotransferase 184865777948664531Rat
621073Usp2ubiquitin specific peptidase 284840398548432525Rat
1304887Dscaml1DS cell adhesion molecule-like 184973383550056115Rat
1305111Arhgef12Rho guanine nucleotide exchange factor 1284725937747393042Rat
1307500Rnf214ring finger protein 21485016411650199988Rat
3633Scn2bsodium voltage-gated channel beta subunit 284941900349431110Rat
1307682Ift46intraflagellar transport 4684907597849097689Rat
1305538Ankk1ankyrin repeat and kinase domain containing 185375063153758925Rat
1307196Mpzl2myelin protein zero-like 284934206749353080Rat
1305351Ccdc153coiled-coil domain containing 15384857071848577856Rat
1305840Abcg4ATP binding cassette subfamily G member 484860491548626219Rat
2734Grik4glutamate ionotropic receptor kainate type subunit 484680413447237546Rat
1305890Oafout at first homolog84751171847529689Rat
1305033Tmprss4transmembrane serine protease 484946980449503304Rat
1311492Hinfphistone H4 transcription factor84862639848638012Rat
1309739Foxr1forkhead box R184875430048762765Rat
1310980Mpzl3myelin protein zero-like 384935425749374444Rat
1308017Rbm7RNA binding motif protein 785282309452828134Rat
1308311Sidt2SID1 transmembrane family, member 285023033550246979Rat
1311293Nlrx1NLR family member X184858355948600203Rat
1310872Tmprss13transmembrane serine protease 1384962156849650863Rat
1310999Cadm1cell adhesion molecule 185185890652200591Rat
1309222Cd3eCD3e molecule84929760449309370Rat
1308038Vps11VPS11 core subunit of CORVET and HOPS complexes84867749248692295Rat
1308076Bud13BUD13 homolog85057302650588860Rat
1309096Bcl9lBCL9 like84880568448835794Rat
1309824Tectatectorin alpha84660372846675658Rat
1309197Zw10zw10 kinetochore protein85336588153390742Rat
1305953Rnf26ring finger protein 2684844711348449311Rat
1309606Nnmtnicotinamide N-methyltransferase85291843752938172Rat
1307718Cd3gCD3g molecule84927455349280943Rat
1310281C2cd2lC2CD2-like84864179248652119Rat
1311555Usp28ubiquitin specific peptidase 2885329518853355572Rat
1308880Tbceltubulin folding cofactor E-like84669148846750816Rat
1308802C1qtnf5C1q and TNF related 584844351548445639Rat
1307858Trim29tripartite motif-containing 2984767432147699065Rat
1307477Mfrpmembrane frizzled-related protein84843772048443421Rat
1562572Jamljunction adhesion molecule like84937864449408894Rat
1562173Zpr1ZPR1 zinc finger85056304750572621Rat
1563941RGD1563941similar to hypothetical protein FLJ2001085282919652829610Rat
1560781Nxpe4neurexophilin and PC-esterase domain family member 485271734152734448Rat
1559807Pdzd3PDZ domain containing 384857790548582353Rat
1359110Arcn1archain 184905125749075861Rat
1559602RGD1559602similar to glutathione S-transferase subunit pi84960531549605943Rat
1302991Trappc4trafficking protein particle complex subunit 484872375548727182Rat
1303259Atp5mgATP synthase membrane subunit g84922044149227273Rat
1359544Ttc36tetratricopeptide repeat domain 3684910637449109981Rat
1586165Kmt2alysine methyltransferase 2A84911040749185872Rat
1566243Nxpe1neurexophilin and PC-esterase domain family, member 185274129352775469Rat
1565079Tlcd5TLC domain containing 584739912247404018Rat
1562835RGD1562835similar to 40S ribosomal protein S2685028585050286354Rat
1561633LOC500990similar to RIKEN cDNA 4931429L1585059320850608383Rat
1303173Ube4aubiquitination factor E4A84922971349271894Rat
1564560Ddx6DEAD-box helicase 684892476848961394Rat
1561386CblCbl proto-oncogene84848125648564775Rat
1566119H2axH2A.X variant histone84866565248666981Rat
1561243Cep164centrosomal protein 16485006928250132477Rat
1597393Upk2uroplakin 284877290648774898Rat
1597440Cenataccentrosomal AT-AC splicing factor84872969548736574Rat
1591087Mettl9-ps1methyltransferase like 9, pseudogene 184873937048740106Rat
1593938Sik3SIK family kinase 385031026350520284Rat
1596132Tmem25transmembrane protein 2584910075949106258Rat
2322263Cldn25claudin 2585336049053362387Rat
7531008LOC102550769uncharacterized LOC10255076985223213052239879Rat
7503878LOC102549755uncharacterized LOC10254975584676749546773634Rat
7503893LOC102549942uncharacterized LOC10254994284725162947256583Rat
7621914LOC102551354uncharacterized LOC10255135485184517951858880Rat
7557897LOC102556822uncharacterized LOC10255682285255986452619421Rat
7636916LOC102550929uncharacterized LOC10255092985248997852502045Rat
7623214LOC102556753uncharacterized LOC10255675385218977752200591Rat
7624401LOC102550292uncharacterized LOC10255029285154985451567200Rat
7655349LOC102550073uncharacterized LOC10255007385108934551090640Rat
7587328Smim35small integral membrane protein 3584949153349556062Rat
7627355LOC102550632uncharacterized LOC10255063285192677651949104Rat
7641233LOC102547149uncharacterized LOC10254714985012279050123365Rat
7643606LOC102555969uncharacterized LOC10255596985381763353819912Rat
7617217LOC102547347uncharacterized LOC10254734784818010948194585Rat
7617270LOC102555063uncharacterized LOC10255506384781497747822188Rat
7556960LOC102550989uncharacterized LOC10255098985250269152515452Rat
7557037LOC102555654PCNA-associated factor-like85332256453324786Rat
7750867LOC10254985860S ribosomal protein L10-like84703517047039384Rat
7668461LOC102555903uncharacterized LOC10255590385355061853561071Rat
7668475LOC102556026uncharacterized LOC10255602685382499353828917Rat
7720498LOC102547566uncharacterized LOC10254756684856479248569748Rat
7675948LOC102555844uncharacterized LOC10255584485353401453538282Rat
7703106LOC102550157uncharacterized LOC10255015785115232151177368Rat
7680811LOC102549886uncharacterized LOC10254988685091751450924026Rat
9136636LOC103693069uncharacterized LOC10369306984846998348471769Rat
9079295LOC103693067uncharacterized LOC10369306784833760748347279Rat
9210101LOC103693076N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein pseudogene84925828549262223Rat
9084582LOC103693073uncharacterized LOC10369307385204748652060062Rat
9354813LOC103693074uncharacterized LOC10369307485253527752540354Rat
9323205LOC103693063uncharacterized LOC10369306384674242946743784Rat
9323711LOC103693070uncharacterized LOC10369307084929554149297821Rat
9326002LOC103693064uncharacterized LOC10369306484673069846733694Rat
9423700LOC103693071uncharacterized LOC10369307184954443249550769Rat
9427737LOC103693072uncharacterized LOC10369307285042448850437723Rat
9391911LOC103693068uncharacterized LOC10369306884836254848381370Rat
9478544LOC103693065spidroin-1-like84722453947237704Rat
9407135LOC10369307760S ribosomal protein L17 pseudogene84956555249566699Rat
11359679LOC108351845uncharacterized LOC10835184585174254351747150Rat
11443679LOC108351693uncharacterized LOC10835169385106167251063330Rat
11444660LOC108351694uncharacterized LOC10835169485161708751631953Rat
11367780LOC108351696uncharacterized LOC10835169685159551051597157Rat
11418108LOC108351697uncharacterized LOC10835169785180149951807456Rat
11426719LOC108351698uncharacterized LOC10835169885222167552227395Rat
11384736LOC108351689uncharacterized LOC10835168984829955548314542Rat
11395514LOC108351695uncharacterized LOC10835169585165188351678415Rat
11385524LOC108351686uncharacterized LOC10835168684755674347560998Rat
11507021LOC108351688uncharacterized LOC10835168884791933647929194Rat
11496140LOC108351700uncharacterized LOC10835170085256974052574427Rat
11511573LOC108351687uncharacterized LOC10835168784782347347828688Rat
11482331LOC10835169160S ribosomal protein L35a pseudogene84898580348986195Rat
11487581LOC108351692uncharacterized LOC10835169284940900849439265Rat
11491324LOC108351846uncharacterized LOC10835184685180908251810870Rat
11493008LOC108351699uncharacterized LOC10835169985245948552463966Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10177D8Mit721385052948050529680Ratregion
10178D8Wox413085052956350529680Ratregion
33887D8Mit315084658843746588570Ratregion
33973D8Mit219485406504454065241Ratregion
34116D8Mgh1213685000764150007776Ratregion
11322D8Hmgc112185022727950227393Ratregion
36309D8Rat4115585163370751633861Ratregion
35184D8Rat19713784973955049739683Ratregion
36872D8Rat4311285264474552644856Ratregion
37038D8Rat4015985070879850708951Ratregion
36739D8Rat4212185244631652446430Ratregion
35098D8Rat3917685035643250356607Ratregion
38072D8Rat8512385052955950529679Ratregion
40708D8Rat15822285182440451824611Ratregion
38920D8Rat6310785188314351883245Ratregion
39108D8Rat9410385352794953528051Ratregion
41922D8Rat4517484825272348252898Ratregion
42238D8Arb2728585052584050526127Ratregion
42246D8Arb717085052957450529742Ratregion
42248D8Arb823684838489548385160Ratregion
42852D8Rat18716985076786150768014Ratregion
42853D8Rat21520485405841354058607Ratregion
42351D8Rat23323884677973046779961Ratregion
42352D8Rat23222684681503346815255Ratregion
42467D1Rat40523885302089753021133Ratregion
40830D8Rat16021184796234547962563Ratregion
40830D8Rat16021184796214447962563Ratregion
40860D8Rat16113284752185547521996Ratregion
44400D8Got6119484725110447251297Ratregion
44401D8Got6222484852494048525163Ratregion
44402D8Got7013085163372751633856Ratregion
44403D8Got7117985027092550271103Ratregion
44404D8Got6923885021264850212885Ratregion
44406D8Got6622684983336349833586Ratregion
44407D8Got6427785109700351097279Ratregion
44408D8Got6522985101101851011246Ratregion
44409D8Got6713185145074451450870Ratregion
44411D8Got7217785311744453117620Ratregion
44412D8Got7423585359526853595502Ratregion
44413D8Got7324185365500253655242Ratregion
44413D8Got7324185365488353655242Ratregion
60639D8Got6318884850323748503424Ratregion
44856D11Got6829185263637052636660Ratregion
1303358D8Got30224484953387249534121Ratregion
67240D8Arb1031585383981453840128Ratregion
67248D8Arb2330785383981453840120Ratregion
67777D8Uwm114984987158649871742Ratregion
1627847D8Got35916785171984751720013Ratregion
1629797D8Got32429885109699551097292Ratregion
1638505D8Got35517185278628552786455Ratregion
1632801D8Wox3484838490948385228Ratregion
1635389D8Got33315285313611753136263Ratregion
1636609D8Got34415485056196150562114Ratregion
2301434D8Chm1145784720075047201232Ratregion
7205840Apoa121885052535350526269Ratregion
7192154Drd219885374329553743492Ratregion
7206428Hinfp21884863007748630294Ratregion
5035803PMC193673P121285022847450228685Ratregion
5035847PMC22863P164984838544048386088Ratregion
5035919PMC308923P186084867040348671262Ratregion
7206404mMaCIR130157785308003153081607Ratregion
5036263Drd2108385374252253743603Ratregion
5039186RH12756121584872270648722920Ratregion
5036446Pafah1b212485026027150260394Ratregion
5035671WI-1239412684905127349051398Ratregion
5025980RH13044021884929767749297894Ratregion
5028901RH14275514284848752648487667Ratregion
5034315Treh31684899182748992142Ratregion
5029151RH14370910185016498550165085Ratregion
5029209RH14393110484739921247399315Ratregion
5031864AU04689712585080468450804808Ratregion
5034534BE11919217285050078850500959Ratregion
5034644BF39066815785001479750014953Ratregion
5029287RH14422718184955578049555960Ratregion
5034726BI28261620584935276049352964Ratregion
5032219AI74745113085026026150260390Ratregion
5026974RH13424319285384977853849969Ratregion
5029731BE10218415785016637650166532Ratregion
5032513RH12699922385212265452122876Ratregion
5027105STS-Z408366184867790048677960Ratregion
5029767BF38713416784877290848773074Ratregion
5032635RH13473418584844315948443343Ratregion
5029955BF40013817285403192654032097Ratregion
5030041AW53111618584725877247258956Ratregion
5035306AW52968516185217292552173085Ratregion
5025052AW5498179784883553248835628Ratregion
5030339BF40266623485217143652171669Ratregion
5025248RH12758519784751179847511994Ratregion
5033311RH13836915184980914349809293Ratregion
5025314RH12784219284848147048481661Ratregion
5025694RH12930018184866461648664796Ratregion
5030889BF41118011685270063952700754Ratregion
5025802RH12973219285006942650069617Ratregion
5052099RH9483910384866744848667551Ratregion
5052103RH9484121384838647048386682Ratregion
5055149RH14363412784922047949220605Ratregion
5055925RH14408218685369636953696554Ratregion
5056087RH14417513584864473248644866Ratregion
5056099RH14418227684738450147384776Ratregion
5053897RH14291410185298062752980727Ratregion
5053945RH14294117384923223149232402Ratregion
5054273RH14313022985403943754039665Ratregion
5057249AA92606519584909738449097578Ratregion
5055375RH14376524385027320050273442Ratregion
5057818BF38620318484864740148647584Ratregion
5058606BE10218215685056807450568229Ratregion
5058820BI28466318184865648148656661Ratregion
5056589RH14446515785185788051858036Ratregion
5052486AU04101616484899729348997456Ratregion
5058890BI27815420084899737748997576Ratregion
5059024BF38738717785103923551039411Ratregion
5055729RH14396811384680637346806485Ratregion
5058418AI05890811284940899449409105Ratregion
5053283RH14255918785171096651711152Ratregion
5059348AI05915318185051635450517248Ratregion
5053699RH14280013484959414949594282Ratregion
5049838RH13371118385324803353248215Ratregion
5049988RH13379721785167818051678396Ratregion
7193108DRD29185373431453735329Ratregion
7193129DRD220885373427853735410Ratregion
5052589RH12573324985269622052696468Ratregion
5050958RH13435620785052946050530636Ratregion
5051002RH13438122085024470450244923Ratregion
5050598RH13414919085144975351449942Ratregion
5050852RH13429520785374338753743593Ratregion
5040700RH12843318084844723848447417Ratregion
5040846RH12851720685025806750258272Ratregion
5043644RH13014418085022237250222551Ratregion
5045374RH13114118484872975148730007Ratregion
5041684RH12899916384922978749229949Ratregion
5041884RH12911415084872376948723918Ratregion
5046344RH13169818185283003652830216Ratregion
5045340RH13112121685108793551088150Ratregion
5045344RH13112421685260039452600609Ratregion
5045880RH13143222084866462748664846Ratregion
5047858RH13256919385388490653885098Ratregion
5046634RH13186618585016364150163825Ratregion
5046668RH13188618784945592549456111Ratregion
5046704RH13190719685180920051809395Ratregion
5046818RH13197218084921937649219555Ratregion
5042120RH12925119684751179747511992Ratregion
5047352RH132278084815698848157201Ratregion
5048390RH13287618885276391252764099Ratregion
5039906RH12797621384867788948678101Ratregion
5048510RH13294518185282334052823520Ratregion
5040166RH12812720284970298349703184Ratregion
5042224RH12931118284844540348445584Ratregion
5040362RH12823920884866664448666851Ratregion
5040510RH12832518885053916250539349Ratregion
5043078RH12981818384858359448583776Ratregion
5043122RH12984418985006934450069532Ratregion
5042476RH12945720584872256048722764Ratregion
5042610RH12953820084866432248664521Ratregion
5041004RH12860821484866740348667616Ratregion
5043658RH13015219485280275252802945Ratregion
5043892RH13028919785052003550520225Ratregion
5043068RH12981318385015860450158786Ratregion
5075128RH13841420284940865449408855Ratregion
5073936RH13772420885272333352723540Ratregion
5075264RH13849416384862547148625634Ratregion
5075480RH13861820385020604650206248Ratregion
5075702RH13874718284808844648088627Ratregion
5075778RH13879123785298279152983028Ratregion
5075830RH13882112585016060850160732Ratregion
5072520RH13689718584857760748577791Ratregion
5074388RH13798821184895302048953230Ratregion
5076048RH13894916685384808653848251Ratregion
5076334RH13911512785269928652699412Ratregion
5072632RH13696216685023035350230518Ratregion
5076612RH13927716785247959552479761Ratregion
5074878RH13827024985381816353819551Ratregion
5076192RH13903215584848881048488964Ratregion
5077576RH13983519885057117250571369Ratregion
5079544RH14105921585022299150223205Ratregion
5076354RH13912712785056107550561201Ratregion
5079762RH14118821284971693949717410Ratregion
5078018RH14009420085383850153838700Ratregion
5078800RH140559084900222549002533Ratregion
5080148RH14141319885025951050259707Ratregion
5079168RH14077517184725824447258414Ratregion
5073246RH13732518284843224348432424Ratregion
5073978RH13774813785257467452574810Ratregion
5067208AU04789617584902925849029427Ratregion
5067230AU04788324884902926749029512Ratregion
5070079RH9446017785053891650539092Ratregion
5070081RH9446118685052683550527020Ratregion
5070370AI8462548885052016750520254Ratregion
5060174BI27962219184864473248644922Ratregion
5060192BI27969420384769858447698786Ratregion
5061844AW53386215384737250847372659Ratregion
5062096BF39743214084916184349161982Ratregion
5062276BE10646718884844078848440975Ratregion
5064176BE12072017285220023352200404Ratregion
5065732BF40631315985292985052930008Ratregion
5065280BE12137220684814763748147842Ratregion
5062354BE10659115384901751549017667Ratregion
5065636BE10950915284848239448482545Ratregion
5060752BF38908320785257371952573925Ratregion
5066076BF4133169485335106753351160Ratregion
5061014BF38970216085051894250519101Ratregion
5063230BI28954021284937400649374217Ratregion
5066458AU04834523685182452251824757Ratregion
5061564BF40204514685385300053853145Ratregion
5086861AI00765516484726070747260871Ratregion
5086875AI41273316085217019752170356Ratregion
5082029BF40911422285343313853433359Ratregion
5086319BQ19210020185339376453393964Ratregion
5086359BM38495416785375069153750857Ratregion
5087090BE10699918585309323653093420Ratregion
5087325BQ19390319685291971952919914Ratregion
5087396AI71714122085016422050164439Ratregion
5082593BE11981217884942683049427007Ratregion
5089925AU04944518685293263152932816Ratregion
5083201BF39097716884669259746692764Ratregion
5083749AA80068817484739709847397271Ratregion
5088823AU04879221685044330550443520Ratregion
5081775BE11816316884846883748469004Ratregion
5082049BF40920014185274648152746621Ratregion
5082123BF4097729484674883046748923Ratregion
5082157BI28007617584769876547698939Ratregion
5082227BI27429921884814737248147589Ratregion
5088491AU04860127185094676850947038Ratregion
5085163BE09637116884838637048386537Ratregion
5090315AU04967819184797221247972402Ratregion
5085471BM38312119984883581448836012Ratregion
5082661BE11995215685126180951261964Ratregion
5085810BF38814916785385571953855885Ratregion
5085908AA87500418485058857950588762Ratregion
5080922RH14186019985251749952517697Ratregion
5086301AW52974117284815014448150315Ratregion
5086353BM38567718084946986149470040Ratregion
5084804AI10285418184728078447280964Ratregion
5086483BM38576617085323327153233440Ratregion
5083391BF39103817684943637549436550Ratregion
5086821BE11467115585379699053797144Ratregion
5503410D1S285441685386970053870115Ratregion
5507701UNH19182884989659849897425Ratregion
5505120Tagln27585022430850224684Ratregion
5505347Upk287984877395348774831Ratregion
5505528RH67992101885116897051169987Ratregion
5505480REN7341925485062826850628521Ratregion
5505482REN7377622685072139950721624Ratregion
5506648ECD0116187885060839850609275Ratregion
5506783G4530018084884313748843316Ratregion
5499679MARC_7597-7598:992008547:116785022340050224255Ratregion
5500009UniSTS:2361188185255479452554874Ratregion
5499647MARC_6495-6496:992007247:1085050403850504539Ratregion
5501155PMC150745P218085022381250224359Ratregion
5502601RH12550315884751233147512488Ratregion
5500681RH13663218985218921652189404Ratregion
5501383Lep130885047743050478737Ratregion
5501395Mll180784914818549148991Ratregion
5501814MARC_13871-13872:1007494510:1112785373668053737806Ratregion
5502050MARC_26154-26155:1030452349:1115184868340048684550Ratregion
5507247BB2395408385005591350055995Ratregion
5502323RH12447018284873993548740227Ratregion
Position Markers

Flank 1: (D8Mit3)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0846,588,437 - 46,588,570NCBI
Rnor_5.0845,061,464 - 45,061,597UniSTS
RGSC_v3.4845,291,674 - 45,291,808RGD
RGSC_v3.4845,291,675 - 45,291,808UniSTS
RGSC_v3.1845,300,440 - 45,300,574RGD
Celera842,285,573 - 42,285,706UniSTS
RH 3.4 Map8410.8UniSTS
RH 3.4 Map8410.8RGD
Cytogenetic Map8 RGD
Peak: (D8Mit2)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0854,065,044 - 54,065,241NCBI
Rnor_5.0852,685,897 - 52,686,094UniSTS
RGSC_v3.4853,049,279 - 53,049,477RGD
RGSC_v3.4853,049,280 - 53,049,477UniSTS
RGSC_v3.1853,068,254 - 53,068,551RGD
Celera849,646,904 - 49,647,101UniSTS
RH 3.4 Map8537.5UniSTS
RH 3.4 Map8537.5RGD
RH 2.0 Map8403.3RGD
Cytogenetic Map8q23UniSTS
Flank 2: (D8Mit2)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0854,065,044 - 54,065,241NCBI
Rnor_5.0852,685,897 - 52,686,094UniSTS
RGSC_v3.4853,049,279 - 53,049,477RGD
RGSC_v3.4853,049,280 - 53,049,477UniSTS
RGSC_v3.1853,068,254 - 53,068,551RGD
Celera849,646,904 - 49,647,101UniSTS
RH 3.4 Map8537.5UniSTS
RH 3.4 Map8537.5RGD
RH 2.0 Map8403.3RGD
Cytogenetic Map8q23UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8210812847108128Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8210812847108128Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8210812847108128Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8210812847108128Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8736807652368076Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8736807652368076Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8736807652368076Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8873867753738677Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)89531047119211942Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)81038843955388439Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)81038843955388439Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810938911120496129Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81137326757541668Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81144825156448251Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81144825156448251Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81766655562666555Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)82071759265717592Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)82146491991140553Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)821813070100873963Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82784149672841496Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82816802350708951Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)82986798359908353Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)829867983106526740Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)829867983106526740Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)829867983106526740Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83014480075144800Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)83014480075144800Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)83091811258858224Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)83091811275918112Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)830918112107206309Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83220198154065241Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83220198175971421Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)832888352101374135Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866046588570Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866062857995Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866065717592Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866065717592Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83355866065717592Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83355866065717592Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83355866065717592Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83355866065717592Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83355866089058369Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83355866089058369Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83355866089058369Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83355866089058369Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)833558660109028082Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)833558660109028082Rat
1578755Pur5Proteinuria QTL 53.30.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)833558660109028082Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)833558764113580387Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83504141480041414Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83592559480925594Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)839230130106506973Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83992790184927901Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83995802284958022Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84421919789542960Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)844219197100873963Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)844458129118087517Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84571234480003418Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84571234490712344Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)84571247575971259Rat
5684993Bmd84Bone mineral density QTL 844.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)84658843754065241Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84658843796998640Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)847200750106394378Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)847200750106394378Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)847200750106394378Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)847200750106394378Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)847200750106394378Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)847200750106394378Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)850529480128036471Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)850529480128036471Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)850529563106506973Rat
1582229Stl20Serum triglyceride level QTL 203.20.0033blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)85264474553117620Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85406504489058369Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85406504489058369Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85406504489058369Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 19 parental GK, 20 parental F344, 37 F1 and 206 F2 rats 5684953
qtl_general lineage: F1 animals from both the reciprocal crosses were used; 2 seperate F2 intercrosses were generated, one from grandmaternal GK and grandpaternal F344, the other from grandmaternal F344 and grandpaternal GK 5684953
qtl_general measurement method: at 215 days (mean age) rats kept under controlled conditions were sacrificed and left tibia was subjected to two-dimensional dual energy X-ray absorptiometry using a PIXImusTM densitometer (GE Lunar, Madison, WI) 5684953
qtl_general software used: bone mineral content measured using GE Lunar software 5684953
qtl_general this region (35-58 cM) is determined in grandmaternal F344/grandpaternal GK and grandmaternal GK/grandpaternal F344 F2 male rats 5684953