Rpl4 (ribosomal protein L4) - Rat Genome Database

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Gene: Rpl4 (ribosomal protein L4) Rattus norvegicus
Analyze
Symbol: Rpl4
Name: ribosomal protein L4
RGD ID: 619824
Description: Enables 5S rRNA binding activity. Involved in several processes, including brainstem development; cellular response to organonitrogen compound; and positive regulation of axon extension. Located in A band. Part of cytosolic large ribosomal subunit. Is active in postsynaptic density. Orthologous to human RPL4 (ribosomal protein L4); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L1; 60S ribosomal protein L4; L1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2864,671,177 - 64,676,301 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl864,671,160 - 64,676,306 (+)Ensembl
Rnor_6.0869,121,682 - 69,126,805 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl869,121,682 - 69,126,805 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0868,827,918 - 68,833,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4868,366,802 - 68,371,925 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1868,385,855 - 68,390,979 (+)NCBI
Celera864,077,918 - 64,083,041 (+)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
amiodarone  (EXP)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzbromarone  (EXP)
bisphenol A  (EXP,ISO)
bleomycin A2  (EXP)
Brodifacoum  (EXP)
cadmium atom  (ISO)
caffeine  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clofibrate  (EXP)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
DDT  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
deoxynivalenol  (ISO)
dicrotophos  (ISO)
dihydroartemisinin  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flavonoids  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
irinotecan  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
nickel atom  (ISO)
omeprazole  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
propiconazole  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:12962325   PMID:16791210   PMID:16854843   PMID:18809582   PMID:19946888   PMID:20458337   PMID:21423176   PMID:21630459   PMID:22658674   PMID:22681889   PMID:22720776   PMID:22871113  
PMID:24454821   PMID:25763846   PMID:29476059   PMID:30053369  


Genomics

Comparative Map Data
Rpl4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2864,671,177 - 64,676,301 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl864,671,160 - 64,676,306 (+)Ensembl
Rnor_6.0869,121,682 - 69,126,805 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl869,121,682 - 69,126,805 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0868,827,918 - 68,833,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4868,366,802 - 68,371,925 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1868,385,855 - 68,390,979 (+)NCBI
Celera864,077,918 - 64,083,041 (+)NCBICelera
Cytogenetic Map8q24NCBI
RPL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381566,498,015 - 66,504,855 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1566,498,015 - 66,524,532 (-)EnsemblGRCh38hg38GRCh38
GRCh371566,790,353 - 66,797,193 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361564,578,707 - 64,584,238 (-)NCBINCBI36hg18NCBI36
Build 341564,578,707 - 64,584,238NCBI
Celera1543,680,858 - 43,686,530 (-)NCBI
Cytogenetic Map15q22.31NCBI
HuRef1543,627,790 - 43,633,330 (-)NCBIHuRef
CHM1_11566,909,659 - 66,915,199 (-)NCBICHM1_1
Rpl4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39964,080,159 - 64,085,844 (+)NCBIGRCm39mm39
GRCm39 Ensembl964,080,657 - 64,085,948 (+)Ensembl
GRCm38964,173,387 - 64,178,562 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl964,173,375 - 64,178,666 (+)EnsemblGRCm38mm10GRCm38
MGSCv37964,021,194 - 64,026,369 (+)NCBIGRCm37mm9NCBIm37
MGSCv36963,971,381 - 63,976,672 (+)NCBImm8
Celera961,398,680 - 61,403,855 (+)NCBICelera
Cytogenetic Map9CNCBI
Rpl4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554509,169,648 - 9,176,604 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554509,170,372 - 9,175,224 (+)NCBIChiLan1.0ChiLan1.0
RPL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11563,721,912 - 63,727,477 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1563,721,912 - 63,727,477 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01545,446,582 - 45,452,173 (-)NCBIMhudiblu_PPA_v0panPan3
RPL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13030,766,891 - 30,771,808 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3030,766,895 - 30,771,808 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3030,697,008 - 30,701,925 (-)NCBI
ROS_Cfam_1.03030,963,498 - 30,968,415 (-)NCBI
ROS_Cfam_1.0 Ensembl3030,963,501 - 30,968,429 (-)Ensembl
UMICH_Zoey_3.13030,892,952 - 30,897,867 (-)NCBI
UNSW_CanFamBas_1.03030,952,503 - 30,957,425 (-)NCBI
UU_Cfam_GSD_1.03031,193,931 - 31,198,848 (-)NCBI
Rpl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640108,787,777 - 108,793,871 (-)NCBI
SpeTri2.0NW_00493647126,635,838 - 26,641,877 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1164,471,992 - 164,481,534 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11164,476,269 - 164,481,765 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21182,226,366 - 182,231,693 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12617,046,189 - 17,051,427 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048124,399,514 - 124,404,758 (-)NCBIVero_WHO_p1.0
Rpl4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247816,209,707 - 6,214,995 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
PMC140912P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,299 - 206,487,454NCBIRnor5.0
RGSC_v3.41187,302,963 - 187,303,117UniSTSRGSC3.4
Celera1180,278,860 - 180,279,014UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map1q22UniSTS
PMC18810P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,422 - 206,487,559NCBIRnor5.0
RGSC_v3.41187,303,086 - 187,303,222UniSTSRGSC3.4
Celera1180,278,983 - 180,279,119UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map3q35UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map8q24UniSTS
PMC350564P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01206,487,427 - 206,487,551NCBIRnor5.0
RGSC_v3.41187,303,091 - 187,303,214UniSTSRGSC3.4
Celera1180,278,988 - 180,279,111UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map3q35UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map8q24UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
2303564Gluco43Glucose level QTL 433blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)82613018771130187Rat
2303572Insul13Insulin level QTL 132blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)82613018771130187Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)82950266570386295Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
1578755Pur5Proteinuria QTL 53.30.0001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)84186701070386132Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)85423764485365202Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)85423764485365202Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:13
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000013461
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 20 24 18 17 18 26 18 32 1
Medium 1 23 33 23 2 23 8 11 48 17 9 10 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC063811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X82180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000013461   ⟹   ENSRNOP00000013462
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl864,671,160 - 64,676,306 (+)Ensembl
Rnor_6.0 Ensembl869,121,682 - 69,126,805 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106792   ⟹   ENSRNOP00000083420
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl864,672,556 - 64,676,306 (+)Ensembl
RefSeq Acc Id: NM_022510   ⟹   NP_071955
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2864,671,177 - 64,676,301 (+)NCBI
Rnor_6.0869,121,682 - 69,126,805 (+)NCBI
Rnor_5.0868,827,918 - 68,833,041 (+)NCBI
RGSC_v3.4868,366,802 - 68,371,925 (+)RGD
Celera864,077,918 - 64,083,041 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_071955 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH63811 (Get FASTA)   NCBI Sequence Viewer  
  AAH81801 (Get FASTA)   NCBI Sequence Viewer  
  CAA57671 (Get FASTA)   NCBI Sequence Viewer  
  P50878 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_071955   ⟸   NM_022510
- UniProtKB: P50878 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000013462   ⟸   ENSRNOT00000013461
RefSeq Acc Id: ENSRNOP00000083420   ⟸   ENSRNOT00000106792
Protein Domains
Ribos_L4_asso_C

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696064
Promoter ID:EPDNEW_R6589
Type:multiple initiation site
Name:Rpl4_1
Description:ribosomal protein L4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0869,121,677 - 69,121,737EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619824 AgrOrtholog
BioCyc Gene G2FUF-30116 BioCyc
Ensembl Genes ENSRNOG00000009378 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013462 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013461 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.40.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6919340 IMAGE-MGC_LOAD
  IMAGE:7192390 IMAGE-MGC_LOAD
InterPro Ribos_L4_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L4/L1e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L4/L1e_euk/arc_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L4_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L4_euk/arch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64302 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72833 IMAGE-MGC_LOAD
  MGC:93439 IMAGE-MGC_LOAD
NCBI Gene 64302 ENTREZGENE
PANTHER PTHR19431 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribos_L4_asso_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl4 PhenoGen
PROSITE RIBOSOMAL_L1E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52166 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt P50878 ENTREZGENE
  Q6P3V9_RAT UniProtKB/TrEMBL
  RL4_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Rpl4  ribosomal protein L4      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Rpl4  ribosomal protein L4      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_protein 421 amino acids 633919