Lingo1 (leucine rich repeat and Ig domain containing 1)

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Gene: Lingo1 (leucine rich repeat and Ig domain containing 1) Rattus norvegicus

Analyze

Symbol:

Lingo1

Name:

leucine rich repeat and Ig domain containing 1

RGD ID:

1308668

Description:

Predicted to enable epidermal growth factor receptor binding activity. Predicted to act upstream of or within generation of neurons and protein kinase B signaling. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability and glaucoma. Orthologous to human LINGO1 (leucine rich repeat and Ig domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

leucine rich repeat neuronal 6A; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1; LOC315691; Lrrn6a

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	57,011,272 - 57,193,496 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	8	57,010,007 - 57,196,544 (-)	Ensembl
Rnor_6.0	8	61,272,125 - 61,455,480 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	61,274,017 - 61,290,240 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	59,842,273 - 60,025,178 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	60,335,369 - 60,351,617 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	60,353,788 - 60,376,585 (-)	NCBI
Celera	8	56,482,212 - 56,498,460 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colon cancer (ISO)

essential tremor (ISO)

glaucoma (ISO)

Mental Retardation, Autosomal Recessive 64 (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

all-trans-retinoic acid (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

calcitriol (ISO)

carbamazepine (ISO)

choline (ISO)

cisplatin (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

furan (EXP)

genistein (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

nitrofen (EXP)

pentanal (ISO)

phenylmercury acetate (ISO)

propanal (ISO)

quercetin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

testosterone undecanoate (ISO)

triptonide (ISO)

tunicamycin (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

central nervous system neuron development (ISO)

negative regulation of oligodendrocyte differentiation (ISO)

neuron projection development (ISO)

protein kinase B signaling (ISO)

Cellular Component

extracellular matrix (IBA)

extracellular space (IBA)

integral component of membrane (IEA)

Molecular Function

epidermal growth factor receptor binding (IBA,ISO)

protein binding (ISO)

References

References - curated


1.	Fu QL, etal., Neuroscience. 2009 Aug 18;162(2):375-82. doi: 10.1016/j.neuroscience.2009.04.075. Epub 2009 May 5.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	RGD automated data pipeline
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12477932	PMID:15895088	PMID:17202489	PMID:17726113	PMID:18183482	PMID:20659559	PMID:22871113	PMID:23482566	PMID:26491860	PMID:26546150	PMID:28193690
PMID:29383653	PMID:30759305	PMID:32462552

Genomics

Comparative Map Data

Lingo1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	57,011,272 - 57,193,496 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	8	57,010,007 - 57,196,544 (-)	Ensembl
Rnor_6.0	8	61,272,125 - 61,455,480 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	61,274,017 - 61,290,240 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	59,842,273 - 60,025,178 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	60,335,369 - 60,351,617 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	60,353,788 - 60,376,585 (-)	NCBI
Celera	8	56,482,212 - 56,498,460 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

LINGO1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	15	77,613,027 - 77,820,900 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	15	77,613,024 - 77,820,900 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	15	77,905,369 - 78,113,242 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	75,692,424 - 75,711,764 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	15	75,692,423 - 75,711,764	NCBI
Celera	15	54,843,608 - 54,862,572 (-)	NCBI
Cytogenetic Map	15	q24.3	NCBI
HuRef	15	54,660,535 - 54,680,264 (-)	NCBI		HuRef
CHM1_1	15	78,023,300 - 78,042,675 (-)	NCBI		CHM1_1

Lingo1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	56,525,743 - 56,704,355 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	56,525,759 - 56,703,752 (-)	Ensembl
GRCm38	9	56,618,460 - 56,796,310 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	56,618,475 - 56,796,468 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	56,466,282 - 56,533,060 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	56,416,612 - 56,483,390 (-)	NCBI			mm8
Celera	9	53,844,163 - 53,910,841 (-)	NCBI		Celera
Cytogenetic Map	9	B	NCBI

Lingo1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	2,435,662 - 2,452,213 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	2,435,768 - 2,493,387 (-)	NCBI	ChiLan1.0	ChiLan1.0

LINGO1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	72,328,076 - 72,534,429 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	72,328,079 - 72,347,016 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	15	56,424,422 - 56,747,075 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

LINGO1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	38,668,199 - 38,738,178 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	38,721,394 - 38,737,464 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	38,590,466 - 38,611,287 (+)	NCBI
ROS_Cfam_1.0	30	38,873,710 - 38,942,658 (+)	NCBI
UMICH_Zoey_3.1	30	38,718,990 - 38,892,481 (+)	NCBI
UNSW_CanFamBas_1.0	30	38,870,129 - 38,939,024 (+)	NCBI
UU_Cfam_GSD_1.0	30	39,107,012 - 39,176,028 (+)	NCBI

Lingo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	116,690,565 - 116,881,599 (+)	NCBI
SpeTri2.0	NW_004936471	34,657,073 - 34,729,662 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LINGO1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	57,684,589 - 57,890,126 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	57,684,591 - 57,890,121 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	62,376,757 - 62,583,077 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LINGO1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	5,485,059 - 5,690,531 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	26	5,688,293 - 5,690,155 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666048	136,058,467 - 136,267,092 (-)	NCBI	Vero_WHO_p1.0

Lingo1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624894	648,357 - 791,168 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

WI-21778

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	57,011,960 - 57,012,141 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	61,274,029 - 61,274,209	NCBI	Rnor6.0
Rnor_5.0	8	59,844,177 - 59,844,357	UniSTS	Rnor5.0
RGSC_v3.4	8	60,209,634 - 60,209,814	UniSTS	RGSC3.4
RGSC_v3.4	8	60,335,406 - 60,335,586	UniSTS	RGSC3.4
Celera	8	56,482,249 - 56,482,429	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH133868

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	57,011,336 - 57,011,532 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	61,273,405 - 61,273,600	NCBI	Rnor6.0
Rnor_5.0	8	59,843,553 - 59,843,748	UniSTS	Rnor5.0
RGSC_v3.4	8	60,334,782 - 60,334,977	UniSTS	RGSC3.4
RGSC_v3.4	8	60,209,010 - 60,209,205	UniSTS	RGSC3.4
Celera	8	56,481,625 - 56,481,820	UniSTS
RH 3.4 Map	8	636.19	UniSTS
Cytogenetic Map	8	q24	UniSTS

Lingo1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	57,012,450 - 57,013,686 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	61,274,519 - 61,275,754	NCBI	Rnor6.0
Rnor_5.0	8	59,844,667 - 59,845,902	UniSTS	Rnor5.0
RGSC_v3.4	8	60,335,896 - 60,337,131	UniSTS	RGSC3.4
Celera	8	56,482,739 - 56,483,974	UniSTS
Cytogenetic Map	8	q24	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	58482492	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	30848154	61290444	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	46531639	119088624	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	46531722	99083736	Rat
2303570	Gluco48	Glucose level QTL 48	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	49805831	94805831	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	50095249	82460899	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	50095249	82460899	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	50095249	82460899	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	54043744	98968765	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	54237644	85365202	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	54237644	85365202	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	54237644	99103503	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	54259986	100382532	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	156
Count of miRNA genes:	113
Interacting mature miRNAs:	123
Transcripts:	ENSRNOT00000023084
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									66	6	22
Low	1	28	10	10	2	10		1	8	15	16	2
Below cutoff	2	12	40	24	17	24	8	10		14	3	9	8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC092632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE108045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF547075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000023084 ⟹ ENSRNOP00000023084

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	57,011,949 - 57,028,173 (-)	Ensembl
Rnor_6.0 Ensembl	8	61,274,017 - 61,290,240 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094295 ⟹ ENSRNOP00000080188

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	57,011,166 - 57,114,544 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096263 ⟹ ENSRNOP00000084606

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	57,010,052 - 57,196,544 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103010 ⟹ ENSRNOP00000096831

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	57,010,186 - 57,193,155 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105281 ⟹ ENSRNOP00000094597

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	57,010,186 - 57,193,155 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105816 ⟹ ENSRNOP00000078102

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	57,010,007 - 57,192,216 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111614 ⟹ ENSRNOP00000097278

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	57,010,057 - 57,028,839 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113428 ⟹ ENSRNOP00000086992

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	57,010,841 - 57,071,323 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114132 ⟹ ENSRNOP00000087521

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	57,010,186 - 57,193,155 (-)	Ensembl

RefSeq Acc Id:

NM_001100722 ⟹ NP_001094192

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	57,011,924 - 57,028,173 (-)	NCBI
Rnor_6.0	8	61,273,992 - 61,290,240 (-)	NCBI
Rnor_5.0	8	59,842,273 - 60,025,178 (-)	NCBI
RGSC_v3.4	8	60,335,369 - 60,351,617 (-)	RGD
Celera	8	56,482,212 - 56,498,460 (-)	RGD

Sequence:

show sequence

CGGCCGCGGCCTCAGCCTCCGCCCCCGACTCCTGAGCTCCTGCCCTAGGGCCGGCTGGGCTCCC
GCCCGCGTGGGACAGACAGACGGAAAGCCAGCCCTGCGAGGGCGCGCGGACCGGGCGGAGGTGT
TGTAGGAGGAGACGGAGGAGGGGGGCTGGGCTGGGGCTGGGGCCGCGCCGGCAAGAGAGACATG
CGATTGGTGACCAAGCCGAGCGGACGGACAGCGCGCCCGAGATGCAGGTGAGCGAGAGGATGCT
GGCAGGGGGTATGAGAAGCATGCCCAGCCCCCTCCTGGCCTGCTGGCAGCCCATCCTCCTGCTG
GTCCTGGGCTCTGTGCTGTCAGGCTCCGCCACCGGCTGCCCGCCCCGCTGCGAGTGCTCAGCGC
AGGACCGAGCAGTGCTCTGTCACCGCAAGCGCTTTGTGGCGGTGCCCGAGGGCATCCCCACCGA
GACTCGCCTGCTGGACCTGGGCAAAAACCGCATCAAGACACTCAACCAGGACGAGTTTGCCAGT
TTCCCACACCTGGAGGAGCTAGAACTCAATGAGAACATTGTGAGCGCTGTGGAGCCGGGCGCCT
TCAACAACCTCTTCAACCTGAGGACGCTGGGGCTTCGCAGCAACCGCCTGAAGCTCATCCCGCT
GGGCGTCTTCACCGGCCTCAGCAACTTGACCAAGCTGGACATCAGCGAGAACAAGATCGTCATC
CTGCTAGACTACATGTTCCAAGACCTATACAACCTCAAGTCGCTGGAGGTCGGCGACAATGACC
TCGTCTACATCTCCCATCGAGCCTTCAGCGGCCTCAACAGCCTGGAACAGCTGACGCTGGAGAA
ATGCAATCTGACCTCCATCCCCACTGAGGCACTCTCCCACCTGCATGGCCTCATCGTCCTGCGG
CTACGACACCTCAACATCAATGCCATACGGGACTACTCCTTCAAGAGGCTGTACCGACTCAAGG
TCTTAGAGATCTCCCACTGGCCCTACCTGGACACCATGACCCCCAACTGCCTCTACGGCCTCAA
CCTGACATCCCTATCTATCACGCACTGCAACCTGACAGCCGTGCCCTATCTGGCAGTGCGCCAC
CTGGTCTATCTCCGTTTCCTCAATCTTTCCTACAACCCCATCGGTACAATCGAGGGCTCCATGC
TGCATGAGCTGCTGCGGTTGCAAGAGATCCAACTGGTGGGCGGGCAGCTGGCCGTGGTGGAGCC
CTACGCCTTTCGTGGGCTCAATTACCTGCGTGTGCTCAATGTTTCTGGCAACCAGCTGACCACC
CTGGAGGAGTCAGCCTTCCACTCGGTGGGCAACCTGGAGACGCTCATTCTGGACTCCAACCCAC
TGGCCTGTGACTGCCGGCTGCTGTGGGTGTTCCGGCGCCGCTGGCGGCTCAACTTCAACAGGCA
GCAGCCTACCTGCGCCACACCTGAGTTCGTCCAGGGCAAGGAGTTCAAGGACTTCCCCGATGTG
CTCCTACCCAACTACTTCACCTGCCGCCGGGCCCACATCCGGGACCGCAAGGCACAGCAGGTGT
TTGTAGATGAGGGCCACACGGTGCAGTTCGTATGCCGGGCAGATGGCGACCCTCCACCAGCTAT
CCTTTGGCTCTCACCCCGCAAGCACTTGGTCTCAGCCAAGAGCAATGGGCGGCTCACAGTCTTC
CCTGATGGCACGCTGGAGGTGCGCTACGCCCAGGTACAGGACAACGGCACGTACCTGTGCATCG
CAGCCAATGCAGGCGGCAACGACTCCATGCCCGCCCACTTGCATGTGCGCAGCTACTCGCCTGA
CTGGCCCCATCAACCCAACAAGACCTTCGCCTTCATCTCCAACCAGCCAGGCGAGGGAGAGGCC
AACAGCACCCGCGCCACTGTGCCTTTCCCCTTCGACATCAAGACGCTCATCATCGCCACCACCA
TGGGCTTCATCTCCTTCCTGGGCGTGGTCCTATTCTGCCTGGTGCTGCTGTTTCTATGGAGCCG
GGGCAAAGGCAACACAAAGCACAACATCGAAATTGAATATGTGCCCCGGAAATCGGACGCAGGC
ATCAGCTCAGCTGATGCACCCCGCAAGTTCAACATGAAGATGATATGAGGATGGGGCAGGGTGG
GGGCGCAGGGACCCCCCACTTCCGGGGGAACACTGGGCAGGGAAGGTGCCTGGCTGCTGCCCAC
TCACCCCCAGGCCTTCCCACCTTTCCCTGCCCTCCTCACACACTCTCCCCTCCCCCCACGCGCC
CCCGCTGCCACGCCAGCCTCGCCCTCACCGCCTGCCCTCCTTCTACCAGGATTTCAGAAGGCCA
GGCCTGAGGACCCCGCCTACATAGGGGCCAGAGTTGACAGACGAATCCAAAGCCGACGAACCAC
GCGGCAGAGTCAATAATTCAATTAAAAAAAAAGTTACAAACTTCCTCTGTAACTTGGGTTTCAA
TAATTAATGGATTTTTATGAAAACTTGAAATAATAAAAAAAGAAAAAAACTAAAAAAAAAAAAA
AAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006243120 ⟹ XP_006243182

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	57,011,272 - 57,028,849 (-)	NCBI
Rnor_6.0	8	61,272,125 - 61,290,557 (-)	NCBI
Rnor_5.0	8	59,842,273 - 60,025,178 (-)	NCBI

Sequence:

show sequence

GGGAGCCGGCGCGGGAGCCGGAGCGGGCGGCTGCTCAGGAGGCGGCCGGACCTGGACCGGTCCC
GGTCCCGGAGCGCGCGGAGTCCCCACCCGCGCCGCTCGGGCCCCTCTCCCGACGCGGGGCTCAG
AGCAGCATGCGCAGCAGCTGTCCACCGGCCCCAGCCCTGGCCCCGGCACCGCTGCGGAGAACGC
CCGGCCTCGACCCCGGCCCCAGCGGTAGAGGCGGTGGCGGCCGCTCCCGGCCGGCCCGAGGGAC
AGAACCAGGCTCCGGGAGCCCGCGACAGGCGTCCTGAGAGCTACGGTTTCTCAGCCCGCCGCGG
CCGCGGCCTCAGCCTCCGCCCCCGACTCCTGAGCTCCTGCCCTAGGGCCGGCTGGGCTCCCGCC
CGCGTGGGACAGACAGACGGAAAGCCAGCCCTGCGAGGGCGCGCGGACCGGGCGGAGGTGTTGT
AGGAGGAGACGGAGGAGGGGGGCTGGGCTGGGGCTGGGGCCGCGCCGGCAAGAGAGACATGCGA
TTGGTGACCAAGCCGAGCGGACGGACAGCGCGCCCGAGATGCAGGACTATTTCCAGAAACCTGG
CCTGGAGCCCTTTGATCCTCTGTGAATCAGAGTAGCTCACCAAGGCTGGCTTTATCCCTGAGGA
AGCCCTGGGTGAGCGAGAGGATGCTGGCAGGGGGTATGAGAAGCATGCCCAGCCCCCTCCTGGC
CTGCTGGCAGCCCATCCTCCTGCTGGTCCTGGGCTCTGTGCTGTCAGGCTCCGCCACCGGCTGC
CCGCCCCGCTGCGAGTGCTCAGCGCAGGACCGAGCAGTGCTCTGTCACCGCAAGCGCTTTGTGG
CGGTGCCCGAGGGCATCCCCACCGAGACTCGCCTGCTGGACCTGGGCAAAAACCGCATCAAGAC
ACTCAACCAGGACGAGTTTGCCAGTTTCCCACACCTGGAGGAGCTAGAACTCAATGAGAACATT
GTGAGCGCTGTGGAGCCGGGCGCCTTCAACAACCTCTTCAACCTGAGGACGCTGGGGCTTCGCA
GCAACCGCCTGAAGCTCATCCCGCTGGGCGTCTTCACCGGCCTCAGCAACTTGACCAAGCTGGA
CATCAGCGAGAACAAGATCGTCATCCTGCTAGACTACATGTTCCAAGACCTATACAACCTCAAG
TCGCTGGAGGTCGGCGACAATGACCTCGTCTACATCTCCCATCGAGCCTTCAGCGGCCTCAACA
GCCTGGAACAGCTGACGCTGGAGAAATGCAATCTGACCTCCATCCCCACTGAGGCACTCTCCCA
CCTGCATGGCCTCATCGTCCTGCGGCTACGACACCTCAACATCAATGCCATACGGGACTACTCC
TTCAAGAGGCTGTACCGACTCAAGGTCTTAGAGATCTCCCACTGGCCCTACCTGGACACCATGA
CCCCCAACTGCCTCTACGGCCTCAACCTGACATCCCTATCTATCACGCACTGCAACCTGACAGC
CGTGCCCTATCTGGCAGTGCGCCACCTGGTCTATCTCCGTTTCCTCAATCTTTCCTACAACCCC
ATCGGTACAATCGAGGGCTCCATGCTGCATGAGCTGCTGCGGTTGCAAGAGATCCAACTGGTGG
GCGGGCAGCTGGCCGTGGTGGAGCCCTACGCCTTTCGTGGGCTCAATTACCTGCGTGTGCTCAA
TGTTTCTGGCAACCAGCTGACCACCCTGGAGGAGTCAGCCTTCCACTCGGTGGGCAACCTGGAG
ACGCTCATTCTGGACTCCAACCCACTGGCCTGTGACTGCCGGCTGCTGTGGGTGTTCCGGCGCC
GCTGGCGGCTCAACTTCAACAGGCAGCAGCCTACCTGCGCCACACCTGAGTTCGTCCAGGGCAA
GGAGTTCAAGGACTTCCCCGATGTGCTCCTACCCAACTACTTCACCTGCCGCCGGGCCCACATC
CGGGACCGCAAGGCACAGCAGGTGTTTGTAGATGAGGGCCACACGGTGCAGTTCGTATGCCGGG
CAGATGGCGACCCTCCACCAGCTATCCTTTGGCTCTCACCCCGCAAGCACTTGGTCTCAGCCAA
GAGCAATGGGCGGCTCACAGTCTTCCCTGATGGCACGCTGGAGGTGCGCTACGCCCAGGTACAG
GACAACGGCACGTACCTGTGCATCGCAGCCAATGCAGGCGGCAACGACTCCATGCCCGCCCACT
TGCATGTGCGCAGCTACTCGCCTGACTGGCCCCATCAACCCAACAAGACCTTCGCCTTCATCTC
CAACCAGCCAGGCGAGGGAGAGGCCAACAGCACCCGCGCCACTGTGCCTTTCCCCTTCGACATC
AAGACGCTCATCATCGCCACCACCATGGGCTTCATCTCCTTCCTGGGCGTGGTCCTATTCTGCC
TGGTGCTGCTGTTTCTATGGAGCCGGGGCAAAGGCAACACAAAGCACAACATCGAAATTGAATA
TGTGCCCCGGAAATCGGACGCAGGCATCAGCTCAGCTGATGCACCCCGCAAGTTCAACATGAAG
ATGATATGAGGATGGGGCAGGGTGGGGGCGCAGGGACCCCCCACTTCCGGGGGAACACTGGGCA
GGGAAGGTGCCTGGCTGCTGCCCACTCACCCCCAGGCCTTCCCACCTTTCCCTGCCCTCCTCAC
ACACTCTCCCCTCCCCCCACGCGCCCCCGCTGCCACGCCAGCCTCGCCCTCACCGCCTGCCCTC
CTTCTACCAGGATTTCAGAAGGCCAGGCCTGAGGACCCCGCCTACATAGGGGCCAGAGTTGACA
GACGAATCCAAAGCCGACGAACCACGCGGCAGAGTCAATAATTCAATTAAAAAAAAAGTTACAA
ACTTCCTCTGTAACTTGGGTTTCAATAATTAATGGATTTTTATGAAAACTTGAAATAATAAAAA
AAGAAAAAAACTATTTCCTATAGCTAGTCGGAATGCAAACTTTTGACGTCCTGATGGCTCCAGG
GCCTTCTTCCAACTCAGTTTCTTGTTTTTCTCTTCCTCCTTCTCCTCCTCTTCCTCCTTTCTCT
TCTCTTCCCCTGTGGGGAGGGATCACTCAGGAAAACAGGGAAGGAGATTCCAGCCCCACCCTCT
GGCCCACTCTGCTAGGCGCCATTTGGAGCCCTGGTGGCACTCAGCTCCAGGGCCCAGCTCTAGC
TGGCTTTTTGCAGGAAGTAGGGAAGGGGATAGGACTGCCCGGGGGGTGGGGCTTGTCTGCTGGC
TGCCAGGCAGCACTACCAAGGGGAGGTGGGTGCCAGGCTCGGGTGTGGCTGAAGCTGGGACGGG
CTGGGGTCCTCCTGGGGAACAGTACAGTCGGCGGAAAGAGTCAGGAGCCAGAGGCAGGCTGACT
CCTCTCCTCTGGTCCCAGCTCTGCTGCTCACTGTTGTGTGACCTCGAGCAGGTCGCTGGCCCTC
TTGGGCCTCAGTCTCCACATCTGTACAAATGGGAACATTGTCCCTGCCCTGCCTACCTCACAGG
GCTGTTGTGAGGAACTGATGAGATGATGTATGTGAAACACTTTGTAACCTGTAAAGCGCTGTGC
ACATGTGTGTGGGTGACTGCTCTCATTATGGTCATTATTTTCTCATTGTGGGATGGGATCCCCG
TGGGCTCAGGGCTGGGGAGCGAGAGGGGCAGCTCCTGGGGCTCCGATAGGCTCCTCCTAGGACA
CTGGCTGGGCTGGAAAACTTAATAGATTCTTCTACCTCTGGCTGAGAGGCCCCCTAGACGCCAG
CTTTGGCCTGGACATGTACAAAGTTGGGAATACCAGCTCTCTCCAGGTCTTATTCGCAAGTGTT
TATTGAATATCTGATCTATACCACTTCCTGTGTACAGTCCTCAGGGTCAGAGGCCATTCTAGGG
CAGCCTAAAGACAGCGCAAACTGATCCTGTCACCAGCTCTCAATCTTTCCGCTAAGCCATGCTC
TGGGGCCTATCACCGGCTTGGCAGAGGTCTCTTGGATTTGGATCTGGGACCCAACTACCCGTGA
GCTGACCAGGAGAGCCAGACAATAGCTTCCACCTGCACTGTATAGTTCAAACCAACTCTAAATG
CTCCCAACTCAGCCTGGAGAGGGTTGCCCTGGGCAACAGAGTGACAAGTTAGGTGGTGGTTTGT
CACGTCCCTAGAAAGCATCCTTGGGCCCTGTCTGAAAAGCCAACAGCAGCTCAGTTGGCCGACC
TACTTCTCACTGCACCTTGTGTCTGTGGGCAGAGAGAACATGGCCAGGTCCCTGGCCTCTCCAC
TATGGCCTCTCCTCCTATGGACAGCTTCAGTTTGGCCCTAAGTAGGCCTGGGTGGCCTGCCTCC
CATTCATCCACTGGCTAAGGGAAATAAATCTACAGCAATACAGGGACCAAGGGGCACAGACCAA
GCTGCGTGAGCACAATAGGGAAGCCAGTCCTCAGAATCTGGAAACCACCAGGATGCAGGGTGTC
CATGCCAAGGCCTAGGGGTGAGAGAGCCTGGGGTCAGCACTCAGTCCTTTACTCATTCATTCAT
TCATTCATTCATTCCTCAGGCATCGCTGCTGGGACTCTGCTCCAGCTTAGCTGATGTCTAAGGC
TAGAGCCAGCCTTGCCCTGTTCTCCCAACCACTGGCCAGGACTGCCCTGGTTCTGGACAAGGCT
TGAGCCCTCTGGCGATCTCCTACAAGACTCAGTGGTTAGAAGGTGCTGAGGTCCAAGGTCAGGT
CTGAGTCTAATTCTGTCACTCACTAGCTAGGCCCGATTGTCCTCCAAGCTGGTTTCTCACCTGC
AGAATAAAGTTACTTTGTTCTTGA

hide sequence

RefSeq Acc Id:

XM_008766270 ⟹ XP_008764492

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	57,011,272 - 57,193,022 (-)	NCBI
Rnor_6.0	8	61,272,125 - 61,455,480 (-)	NCBI

Sequence:

show sequence

CGGGGATGGATTAATGTCCGGACAACTATCTCCCAAATTCTTCCTTCCAGGGCCCCATAGTTCT
GGAAGTCCAGGAAGTCCAGTCAGCACTATCCACCGCCAGATCCTAATCAGTCCTCAGGCTTAGA
GCAACAATCGCTGAGCGCCCCCTGGATGGTGTGGTCTGGGCAGTTCTCTATCGTCCTTCTCCTT
GACTCACCTCCAGCCCGGGAGGGCTGGACTCAAGCTCCGCGGACACGGCCCTAGCTGCACCATA
GCCCGGACTTGCTCCAGCTCTGTGAGGCCGCTCTTCTCGGCGCCCCGGGTGGGGCAGGTAGAGC
CGTGTGCACTATGCCTTTAAGTCCCGGCGAGATGAACGCTGTGAGTCGCAGCCGAGGCTAGCGC
GGGACGTCGCCATCAGCCCAGCTCAGGCCAAGAACAGAGGGACAGCGGGGACCCTCGCCGCCCA
CTGCGCGCCCATAGTCGGGGCTCAGCGAGCGGCGGGCGGCGCCCGGTGTGATGCGGAAAATGTG
AGAGGCAGCGCAGGGCAGTGGGGAGGTGGGCGCGGAAAAGGGCGGCGGCAAGGCAGAAGGGGAG
GCAGAGGGAGAGGCCGGGGACTGGTCAGGGACAGGTGGAAGACCAGAGCAGCGACCAAAAGGAT
AGAGAGCACACGGCTGTGGGCGGGGGTGTGAGGAAGCCGCAGGAGCCGGGCAGCTGGGCCCCCG
CAGGGGTTGCTAGCGCGGCCACGGCGGGGCAGGGCACACCGGTGGAGCGGGAACGCCCGCGGGG
TGTCCTCTGGGAGCGGCGGGGAACGTGAGGTGCGGTCGGCCCAGGAAGGGTCGAGCAGCTAGGT
CGTTGTGGCAGCCGGGGCCCTTGATGAGCTCCCCGGGAGGGCGAGAACCCAAAGTGCAGAGTCG
GGTGTGCAGCGGCGGGGGTGTGTGCGCGCCCGGGTGTGCGCGAGTGTGAGCGCACGGGAGGCTG
GGAGCGCGCGTTAGGGATTCTGCTGGCATCGCAGCGTGGAGAGCAGGAGGCAGGAGCCGGGCGC
GCAGGGGAGCGCGGGGGCTCTGCCGCGTACACGTCGTGCGCGCTCTCCTGTGCCCATACACACA
CTCTCACACATTCTCACTCTCTCTCACACACACACAAGCACACACACACACGCACACACGCCCT
TCCTTCTTCGCTGGTTGCCTCTGCCACCATCTCGGAGCTGAGTCCTGTGGAGCGAGAACCCAAG
CTGGAGCTGGGATCGGAGGCGAGCCCAGCCTGGTGATGCCGGCCCAGAGCGGAGCCCCGCACGG
ACGGCGGGCTCTGAGGCCTCTTGTATCCACAGGTCCTGAGGTTCTGGCACCTATGAGCAAAAAG
GTCAACTGAGCCAGACCCCAGCTCATCCCAGCCCAGCTGCGCCTAACACTACCCAGTCACAGGA
GTCACGTGAGCCTCCCTCTGGGATCTGGCATGAAGGAGAAATGGATTCTGGATTTTCTGCTCTG
GCTTCCCCTGACTTCTCCAGAATTTAAGACATATCCTGAGACATCTCTTGCTCAACCTCGGCCC
AGAATCCCTGAGGATCGATCCAGAAACCCAACAACCTCAAAACCTAAAAACATCAAGACCCTTT
CCCTGGACACGGACTGGGCAGAAGTAGCCAGTTCATCAGGTGAGCGAGAGGATGCTGGCAGGGG
GTATGAGAAGCATGCCCAGCCCCCTCCTGGCCTGCTGGCAGCCCATCCTCCTGCTGGTCCTGGG
CTCTGTGCTGTCAGGCTCCGCCACCGGCTGCCCGCCCCGCTGCGAGTGCTCAGCGCAGGACCGA
GCAGTGCTCTGTCACCGCAAGCGCTTTGTGGCGGTGCCCGAGGGCATCCCCACCGAGACTCGCC
TGCTGGACCTGGGCAAAAACCGCATCAAGACACTCAACCAGGACGAGTTTGCCAGTTTCCCACA
CCTGGAGGAGCTAGAACTCAATGAGAACATTGTGAGCGCTGTGGAGCCGGGCGCCTTCAACAAC
CTCTTCAACCTGAGGACGCTGGGGCTTCGCAGCAACCGCCTGAAGCTCATCCCGCTGGGCGTCT
TCACCGGCCTCAGCAACTTGACCAAGCTGGACATCAGCGAGAACAAGATCGTCATCCTGCTAGA
CTACATGTTCCAAGACCTATACAACCTCAAGTCGCTGGAGGTCGGCGACAATGACCTCGTCTAC
ATCTCCCATCGAGCCTTCAGCGGCCTCAACAGCCTGGAACAGCTGACGCTGGAGAAATGCAATC
TGACCTCCATCCCCACTGAGGCACTCTCCCACCTGCATGGCCTCATCGTCCTGCGGCTACGACA
CCTCAACATCAATGCCATACGGGACTACTCCTTCAAGAGGCTGTACCGACTCAAGGTCTTAGAG
ATCTCCCACTGGCCCTACCTGGACACCATGACCCCCAACTGCCTCTACGGCCTCAACCTGACAT
CCCTATCTATCACGCACTGCAACCTGACAGCCGTGCCCTATCTGGCAGTGCGCCACCTGGTCTA
TCTCCGTTTCCTCAATCTTTCCTACAACCCCATCGGTACAATCGAGGGCTCCATGCTGCATGAG
CTGCTGCGGTTGCAAGAGATCCAACTGGTGGGCGGGCAGCTGGCCGTGGTGGAGCCCTACGCCT
TTCGTGGGCTCAATTACCTGCGTGTGCTCAATGTTTCTGGCAACCAGCTGACCACCCTGGAGGA
GTCAGCCTTCCACTCGGTGGGCAACCTGGAGACGCTCATTCTGGACTCCAACCCACTGGCCTGT
GACTGCCGGCTGCTGTGGGTGTTCCGGCGCCGCTGGCGGCTCAACTTCAACAGGCAGCAGCCTA
CCTGCGCCACACCTGAGTTCGTCCAGGGCAAGGAGTTCAAGGACTTCCCCGATGTGCTCCTACC
CAACTACTTCACCTGCCGCCGGGCCCACATCCGGGACCGCAAGGCACAGCAGGTGTTTGTAGAT
GAGGGCCACACGGTGCAGTTCGTATGCCGGGCAGATGGCGACCCTCCACCAGCTATCCTTTGGC
TCTCACCCCGCAAGCACTTGGTCTCAGCCAAGAGCAATGGGCGGCTCACAGTCTTCCCTGATGG
CACGCTGGAGGTGCGCTACGCCCAGGTACAGGACAACGGCACGTACCTGTGCATCGCAGCCAAT
GCAGGCGGCAACGACTCCATGCCCGCCCACTTGCATGTGCGCAGCTACTCGCCTGACTGGCCCC
ATCAACCCAACAAGACCTTCGCCTTCATCTCCAACCAGCCAGGCGAGGGAGAGGCCAACAGCAC
CCGCGCCACTGTGCCTTTCCCCTTCGACATCAAGACGCTCATCATCGCCACCACCATGGGCTTC
ATCTCCTTCCTGGGCGTGGTCCTATTCTGCCTGGTGCTGCTGTTTCTATGGAGCCGGGGCAAAG
GCAACACAAAGCACAACATCGAAATTGAATATGTGCCCCGGAAATCGGACGCAGGCATCAGCTC
AGCTGATGCACCCCGCAAGTTCAACATGAAGATGATATGAGGATGGGGCAGGGTGGGGGCGCAG
GGACCCCCCACTTCCGGGGGAACACTGGGCAGGGAAGGTGCCTGGCTGCTGCCCACTCACCCCC
AGGCCTTCCCACCTTTCCCTGCCCTCCTCACACACTCTCCCCTCCCCCCACGCGCCCCCGCTGC
CACGCCAGCCTCGCCCTCACCGCCTGCCCTCCTTCTACCAGGATTTCAGAAGGCCAGGCCTGAG
GACCCCGCCTACATAGGGGCCAGAGTTGACAGACGAATCCAAAGCCGACGAACCACGCGGCAGA
GTCAATAATTCAATTAAAAAAAAAGTTACAAACTTCCTCTGTAACTTGGGTTTCAATAATTAAT
GGATTTTTATGAAAACTTGAAATAATAAAAAAAGAAAAAAACTATTTCCTATAGCTAGTCGGAA
TGCAAACTTTTGACGTCCTGATGGCTCCAGGGCCTTCTTCCAACTCAGTTTCTTGTTTTTCTCT
TCCTCCTTCTCCTCCTCTTCCTCCTTTCTCTTCTCTTCCCCTGTGGGGAGGGATCACTCAGGAA
AACAGGGAAGGAGATTCCAGCCCCACCCTCTGGCCCACTCTGCTAGGCGCCATTTGGAGCCCTG
GTGGCACTCAGCTCCAGGGCCCAGCTCTAGCTGGCTTTTTGCAGGAAGTAGGGAAGGGGATAGG
ACTGCCCGGGGGGTGGGGCTTGTCTGCTGGCTGCCAGGCAGCACTACCAAGGGGAGGTGGGTGC
CAGGCTCGGGTGTGGCTGAAGCTGGGACGGGCTGGGGTCCTCCTGGGGAACAGTACAGTCGGCG
GAAAGAGTCAGGAGCCAGAGGCAGGCTGACTCCTCTCCTCTGGTCCCAGCTCTGCTGCTCACTG
TTGTGTGACCTCGAGCAGGTCGCTGGCCCTCTTGGGCCTCAGTCTCCACATCTGTACAAATGGG
AACATTGTCCCTGCCCTGCCTACCTCACAGGGCTGTTGTGAGGAACTGATGAGATGATGTATGT
GAAACACTTTGTAACCTGTAAAGCGCTGTGCACATGTGTGTGGGTGACTGCTCTCATTATGGTC
ATTATTTTCTCATTGTGGGATGGGATCCCCGTGGGCTCAGGGCTGGGGAGCGAGAGGGGCAGCT
CCTGGGGCTCCGATAGGCTCCTCCTAGGACACTGGCTGGGCTGGAAAACTTAATAGATTCTTCT
ACCTCTGGCTGAGAGGCCCCCTAGACGCCAGCTTTGGCCTGGACATGTACAAAGTTGGGAATAC
CAGCTCTCTCCAGGTCTTATTCGCAAGTGTTTATTGAATATCTGATCTATACCACTTCCTGTGT
ACAGTCCTCAGGGTCAGAGGCCATTCTAGGGCAGCCTAAAGACAGCGCAAACTGATCCTGTCAC
CAGCTCTCAATCTTTCCGCTAAGCCATGCTCTGGGGCCTATCACCGGCTTGGCAGAGGTCTCTT
GGATTTGGATCTGGGACCCAACTACCCGTGAGCTGACCAGGAGAGCCAGACAATAGCTTCCACC
TGCACTGTATAGTTCAAACCAACTCTAAATGCTCCCAACTCAGCCTGGAGAGGGTTGCCCTGGG
CAACAGAGTGACAAGTTAGGTGGTGGTTTGTCACGTCCCTAGAAAGCATCCTTGGGCCCTGTCT
GAAAAGCCAACAGCAGCTCAGTTGGCCGACCTACTTCTCACTGCACCTTGTGTCTGTGGGCAGA
GAGAACATGGCCAGGTCCCTGGCCTCTCCACTATGGCCTCTCCTCCTATGGACAGCTTCAGTTT
GGCCCTAAGTAGGCCTGGGTGGCCTGCCTCCCATTCATCCACTGGCTAAGGGAAATAAATCTAC
AGCAATACAGGGACCAAGGGGCACAGACCAAGCTGCGTGAGCACAATAGGGAAGCCAGTCCTCA
GAATCTGGAAACCACCAGGATGCAGGGTGTCCATGCCAAGGCCTAGGGGTGAGAGAGCCTGGGG
TCAGCACTCAGTCCTTTACTCATTCATTCATTCATTCATTCATTCCTCAGGCATCGCTGCTGGG
ACTCTGCTCCAGCTTAGCTGATGTCTAAGGCTAGAGCCAGCCTTGCCCTGTTCTCCCAACCACT
GGCCAGGACTGCCCTGGTTCTGGACAAGGCTTGAGCCCTCTGGCGATCTCCTACAAGACTCAGT
GGTTAGAAGGTGCTGAGGTCCAAGGTCAGGTCTGAGTCTAATTCTGTCACTCACTAGCTAGGCC
CGATTGTCCTCCAAGCTGGTTTCTCACCTGCAGAATAAAGTTACTTTGTTCTTGA

hide sequence

RefSeq Acc Id:

XM_017595646 ⟹ XP_017451135

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	57,011,272 - 57,193,022 (-)	NCBI
Rnor_6.0	8	61,272,125 - 61,455,480 (-)	NCBI

Sequence:

show sequence

CGGGGATGGATTAATGTCCGGACAACTATCTCCCAAATTCTTCCTTCCAGGGCCCCATAGTTCT
GGAAGTCCAGGAAGTCCAGTCAGCACTATCCACCGCCAGATCCTAATCAGTCCTCAGGCTTAGA
GCAACAATCGCTGAGCGCCCCCTGGATGGTGTGGTCTGGGCAGTTCTCTATCGTCCTTCTCCTT
GACTCACCTCCAGCCCGGGAGGGCTGGACTCAAGCTCCGCGGACACGGCCCTAGCTGCACCATA
GCCCGGACTTGCTCCAGCTCTGTGAGGCCGCTCTTCTCGGCGCCCCGGGTGGGGCAGGTAGAGC
CGTGTGCACTATGCCTTTAAGTCCCGGCGAGATGAACGCTGTGAGTCGCAGCCGAGGCTAGCGC
GGGACGTCGCCATCAGCCCAGCTCAGGCCAAGAACAGAGGGACAGCGGGGACCCTCGCCGCCCA
CTGCGCGCCCATAGTCGGGGCTCAGCGAGCGGCGGGCGGCGCCCGGTGTGATGCGGAAAATGTG
AGAGGCAGCGCAGGGCAGTGGGGAGGTGGGCGCGGAAAAGGGCGGCGGCAAGGCAGAAGGGGAG
GCAGAGGGAGAGGCCGGGGACTGGTCAGGGACAGGTGGAAGACCAGAGCAGCGACCAAAAGGAT
AGAGAGCACACGGCTGTGGGCGGGGGTGTGAGGAAGCCGCAGGAGCCGGGCAGCTGGGCCCCCG
CAGGGGTTGCTAGCGCGGCCACGGCGGGGCAGGGCACACCGGTGGAGCGGGAACGCCCGCGGGG
TGTCCTCTGGGAGCGGCGGGGAACGTGAGGTGCGGTCGGCCCAGGAAGGGTCGAGCAGCTAGGT
CGTTGTGGCAGCCGGGGCCCTTGATGAGCTCCCCGGGAGGGCGAGAACCCAAAGTGCAGAGTCG
GGTGTGCAGCGGCGGGGGTGTGTGCGCGCCCGGGTGTGCGCGAGTGTGAGCGCACGGGAGGCTG
GGAGCGCGCGTTAGGGATTCTGCTGGCATCGCAGCGTGGAGAGCAGGAGGCAGGAGCCGGGCGC
GCAGGGGAGCGCGGGGGCTCTGCCGCGTACACGTCGTGCGCGCTCTCCTGTGCCCATACACACA
CTCTCACACATTCTCACTCTCTCTCACACACACACAAGCACACACACACACGCACACACGCCCT
TCCTTCTTCGCTGGTTGCCTCTGCCACCATCTCGGAGCTGAGTCCTGTGGAGCGAGAACCCAAG
CTGGAGCTGGGATCGGAGGCGAGCCCAGCCTGGTGATGCCGGCCCAGAGCGGAGCCCCGCACGG
ACGGCGGGCTCTGAGGCCTCTTGTATCCACAGGTCCTGAGGTTCTGGCACCTATGAGCAAAAAG
GTCAACTGAGCCAGACCCCAGCTCATCCCAGCCCAGCTGCGCCTAACACTACCCAGTCACAGGA
GTCACGTGAGCCTCCCTCTGGGATCTGGCATGAAGGAGAAATGGATTCTGGATTTTCTGCTCTG
GCTTCCCCTGACTTCTCCAGAATTTAAGACATATCCTGAGACATCTCTTGCTCAACCTCGGCCC
AGAATCCCTGAGGATCGATCCAGAAACCCAACAACCTCAAAACCTAAAAACATCAAGACCCTTT
CCCTGGACACGGACTGGGCAGAAGTAGCCAGTTCATCAGGACTATTTCCAGAAACCTGGCCTGG
AGCCCTTTGATCCTCTGTGAATCAGAGTAGCTCACCAAGGCTGGCTTTATCCCTGAGGAAGCCC
TGGGTGAGCGAGAGGATGCTGGCAGGGGGTATGAGAAGCATGCCCAGCCCCCTCCTGGCCTGCT
GGCAGCCCATCCTCCTGCTGGTCCTGGGCTCTGTGCTGTCAGGCTCCGCCACCGGCTGCCCGCC
CCGCTGCGAGTGCTCAGCGCAGGACCGAGCAGTGCTCTGTCACCGCAAGCGCTTTGTGGCGGTG
CCCGAGGGCATCCCCACCGAGACTCGCCTGCTGGACCTGGGCAAAAACCGCATCAAGACACTCA
ACCAGGACGAGTTTGCCAGTTTCCCACACCTGGAGGAGCTAGAACTCAATGAGAACATTGTGAG
CGCTGTGGAGCCGGGCGCCTTCAACAACCTCTTCAACCTGAGGACGCTGGGGCTTCGCAGCAAC
CGCCTGAAGCTCATCCCGCTGGGCGTCTTCACCGGCCTCAGCAACTTGACCAAGCTGGACATCA
GCGAGAACAAGATCGTCATCCTGCTAGACTACATGTTCCAAGACCTATACAACCTCAAGTCGCT
GGAGGTCGGCGACAATGACCTCGTCTACATCTCCCATCGAGCCTTCAGCGGCCTCAACAGCCTG
GAACAGCTGACGCTGGAGAAATGCAATCTGACCTCCATCCCCACTGAGGCACTCTCCCACCTGC
ATGGCCTCATCGTCCTGCGGCTACGACACCTCAACATCAATGCCATACGGGACTACTCCTTCAA
GAGGCTGTACCGACTCAAGGTCTTAGAGATCTCCCACTGGCCCTACCTGGACACCATGACCCCC
AACTGCCTCTACGGCCTCAACCTGACATCCCTATCTATCACGCACTGCAACCTGACAGCCGTGC
CCTATCTGGCAGTGCGCCACCTGGTCTATCTCCGTTTCCTCAATCTTTCCTACAACCCCATCGG
TACAATCGAGGGCTCCATGCTGCATGAGCTGCTGCGGTTGCAAGAGATCCAACTGGTGGGCGGG
CAGCTGGCCGTGGTGGAGCCCTACGCCTTTCGTGGGCTCAATTACCTGCGTGTGCTCAATGTTT
CTGGCAACCAGCTGACCACCCTGGAGGAGTCAGCCTTCCACTCGGTGGGCAACCTGGAGACGCT
CATTCTGGACTCCAACCCACTGGCCTGTGACTGCCGGCTGCTGTGGGTGTTCCGGCGCCGCTGG
CGGCTCAACTTCAACAGGCAGCAGCCTACCTGCGCCACACCTGAGTTCGTCCAGGGCAAGGAGT
TCAAGGACTTCCCCGATGTGCTCCTACCCAACTACTTCACCTGCCGCCGGGCCCACATCCGGGA
CCGCAAGGCACAGCAGGTGTTTGTAGATGAGGGCCACACGGTGCAGTTCGTATGCCGGGCAGAT
GGCGACCCTCCACCAGCTATCCTTTGGCTCTCACCCCGCAAGCACTTGGTCTCAGCCAAGAGCA
ATGGGCGGCTCACAGTCTTCCCTGATGGCACGCTGGAGGTGCGCTACGCCCAGGTACAGGACAA
CGGCACGTACCTGTGCATCGCAGCCAATGCAGGCGGCAACGACTCCATGCCCGCCCACTTGCAT
GTGCGCAGCTACTCGCCTGACTGGCCCCATCAACCCAACAAGACCTTCGCCTTCATCTCCAACC
AGCCAGGCGAGGGAGAGGCCAACAGCACCCGCGCCACTGTGCCTTTCCCCTTCGACATCAAGAC
GCTCATCATCGCCACCACCATGGGCTTCATCTCCTTCCTGGGCGTGGTCCTATTCTGCCTGGTG
CTGCTGTTTCTATGGAGCCGGGGCAAAGGCAACACAAAGCACAACATCGAAATTGAATATGTGC
CCCGGAAATCGGACGCAGGCATCAGCTCAGCTGATGCACCCCGCAAGTTCAACATGAAGATGAT
ATGAGGATGGGGCAGGGTGGGGGCGCAGGGACCCCCCACTTCCGGGGGAACACTGGGCAGGGAA
GGTGCCTGGCTGCTGCCCACTCACCCCCAGGCCTTCCCACCTTTCCCTGCCCTCCTCACACACT
CTCCCCTCCCCCCACGCGCCCCCGCTGCCACGCCAGCCTCGCCCTCACCGCCTGCCCTCCTTCT
ACCAGGATTTCAGAAGGCCAGGCCTGAGGACCCCGCCTACATAGGGGCCAGAGTTGACAGACGA
ATCCAAAGCCGACGAACCACGCGGCAGAGTCAATAATTCAATTAAAAAAAAAGTTACAAACTTC
CTCTGTAACTTGGGTTTCAATAATTAATGGATTTTTATGAAAACTTGAAATAATAAAAAAAGAA
AAAAACTATTTCCTATAGCTAGTCGGAATGCAAACTTTTGACGTCCTGATGGCTCCAGGGCCTT
CTTCCAACTCAGTTTCTTGTTTTTCTCTTCCTCCTTCTCCTCCTCTTCCTCCTTTCTCTTCTCT
TCCCCTGTGGGGAGGGATCACTCAGGAAAACAGGGAAGGAGATTCCAGCCCCACCCTCTGGCCC
ACTCTGCTAGGCGCCATTTGGAGCCCTGGTGGCACTCAGCTCCAGGGCCCAGCTCTAGCTGGCT
TTTTGCAGGAAGTAGGGAAGGGGATAGGACTGCCCGGGGGGTGGGGCTTGTCTGCTGGCTGCCA
GGCAGCACTACCAAGGGGAGGTGGGTGCCAGGCTCGGGTGTGGCTGAAGCTGGGACGGGCTGGG
GTCCTCCTGGGGAACAGTACAGTCGGCGGAAAGAGTCAGGAGCCAGAGGCAGGCTGACTCCTCT
CCTCTGGTCCCAGCTCTGCTGCTCACTGTTGTGTGACCTCGAGCAGGTCGCTGGCCCTCTTGGG
CCTCAGTCTCCACATCTGTACAAATGGGAACATTGTCCCTGCCCTGCCTACCTCACAGGGCTGT
TGTGAGGAACTGATGAGATGATGTATGTGAAACACTTTGTAACCTGTAAAGCGCTGTGCACATG
TGTGTGGGTGACTGCTCTCATTATGGTCATTATTTTCTCATTGTGGGATGGGATCCCCGTGGGC
TCAGGGCTGGGGAGCGAGAGGGGCAGCTCCTGGGGCTCCGATAGGCTCCTCCTAGGACACTGGC
TGGGCTGGAAAACTTAATAGATTCTTCTACCTCTGGCTGAGAGGCCCCCTAGACGCCAGCTTTG
GCCTGGACATGTACAAAGTTGGGAATACCAGCTCTCTCCAGGTCTTATTCGCAAGTGTTTATTG
AATATCTGATCTATACCACTTCCTGTGTACAGTCCTCAGGGTCAGAGGCCATTCTAGGGCAGCC
TAAAGACAGCGCAAACTGATCCTGTCACCAGCTCTCAATCTTTCCGCTAAGCCATGCTCTGGGG
CCTATCACCGGCTTGGCAGAGGTCTCTTGGATTTGGATCTGGGACCCAACTACCCGTGAGCTGA
CCAGGAGAGCCAGACAATAGCTTCCACCTGCACTGTATAGTTCAAACCAACTCTAAATGCTCCC
AACTCAGCCTGGAGAGGGTTGCCCTGGGCAACAGAGTGACAAGTTAGGTGGTGGTTTGTCACGT
CCCTAGAAAGCATCCTTGGGCCCTGTCTGAAAAGCCAACAGCAGCTCAGTTGGCCGACCTACTT
CTCACTGCACCTTGTGTCTGTGGGCAGAGAGAACATGGCCAGGTCCCTGGCCTCTCCACTATGG
CCTCTCCTCCTATGGACAGCTTCAGTTTGGCCCTAAGTAGGCCTGGGTGGCCTGCCTCCCATTC
ATCCACTGGCTAAGGGAAATAAATCTACAGCAATACAGGGACCAAGGGGCACAGACCAAGCTGC
GTGAGCACAATAGGGAAGCCAGTCCTCAGAATCTGGAAACCACCAGGATGCAGGGTGTCCATGC
CAAGGCCTAGGGGTGAGAGAGCCTGGGGTCAGCACTCAGTCCTTTACTCATTCATTCATTCATT
CATTCATTCCTCAGGCATCGCTGCTGGGACTCTGCTCCAGCTTAGCTGATGTCTAAGGCTAGAG
CCAGCCTTGCCCTGTTCTCCCAACCACTGGCCAGGACTGCCCTGGTTCTGGACAAGGCTTGAGC
CCTCTGGCGATCTCCTACAAGACTCAGTGGTTAGAAGGTGCTGAGGTCCAAGGTCAGGTCTGAG
TCTAATTCTGTCACTCACTAGCTAGGCCCGATTGTCCTCCAAGCTGGTTTCTCACCTGCAGAAT
AAAGTTACTTTGTTCTTGA

hide sequence

RefSeq Acc Id:

XM_017595647 ⟹ XP_017451136

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	57,011,272 - 57,193,022 (-)	NCBI
Rnor_6.0	8	61,272,125 - 61,455,480 (-)	NCBI

Sequence:

show sequence

CGGGGATGGATTAATGTCCGGACAACTATCTCCCAAATTCTTCCTTCCAGGGCCCCATAGTTCT
GGAAGTCCAGGAAGTCCAGTCAGCACTATCCACCGCCAGATCCTAATCAGTCCTCAGGCTTAGA
GCAACAATCGCTGAGCGCCCCCTGGATGGTGTGGTCTGGGCAGTTCTCTATCGTCCTTCTCCTT
GACTCACCTCCAGCCCGGGAGGGCTGGACTCAAGCTCCGCGGACACGGCCCTAGCTGCACCATA
GCCCGGACTTGCTCCAGCTCTGTGAGGCCGCTCTTCTCGGCGCCCCGGGTGGGGCAGGTAGAGC
CGTGTGCACTATGCCTTTAAGTCCCGGCGAGATGAACGCTGTGAGTCGCAGCCGAGGCTAGCGC
GGGACGTCGCCATCAGCCCAGCTCAGGCCAAGAACAGAGGGACAGCGGGGACCCTCGCCGCCCA
CTGCGCGCCCATAGTCGGGGCTCAGCGAGCGGCGGGCGGCGCCCGGTGTGATGCGGAAAATGTG
AGAGGCAGCGCAGGGCAGTGGGGAGGTGGGCGCGGAAAAGGGCGGCGGCAAGGCAGAAGGGGAG
GCAGAGGGAGAGGCCGGGGACTGGTCAGGGACAGGTGGAAGACCAGAGCAGCGACCAAAAGGAT
AGAGAGCACACGGCTGTGGGCGGGGGTGTGAGGAAGCCGCAGGAGCCGGGCAGCTGGGCCCCCG
CAGGGGTTGCTAGCGCGGCCACGGCGGGGCAGGGCACACCGGTGGAGCGGGAACGCCCGCGGGG
TGTCCTCTGGGAGCGGCGGGGAACGTGAGGTGCGGTCGGCCCAGGAAGGGTCGAGCAGCTAGGT
CGTTGTGGCAGCCGGGGCCCTTGATGAGCTCCCCGGGAGGGCGAGAACCCAAAGTGCAGAGTCG
GGTGTGCAGCGGCGGGGGTGTGTGCGCGCCCGGGTGTGCGCGAGTGTGAGCGCACGGGAGGCTG
GGAGCGCGCGTTAGGGATTCTGCTGGCATCGCAGCGTGGAGAGCAGGAGGCAGGAGCCGGGCGC
GCAGGGGAGCGCGGGGGCTCTGCCGCGTACACGTCGTGCGCGCTCTCCTGTGCCCATACACACA
CTCTCACACATTCTCACTCTCTCTCACACACACACAAGCACACACACACACGCACACACGCCCT
TCCTTCTTCGCTGGTTGCCTCTGCCACCATCTCGGAGCTGAGTCCTGTGGAGCGAGAACCCAAG
CTGGAGCTGGGATCGGAGGCGAGCCCAGCCTGGTGATGCCGGCCCAGAGCGGAGCCCCGCACGG
ACGGCGGGCTCTGAGGCCTCTTGTATCCACAGGTCCTGAGGTTCTGGCACCTATGAGCAAAAAG
GTCAACTGAGCCAGACCCCAGCTCATCCCAGCCCAGCTGCGCCTAACACTACCCAGTCACAGGA
GTCCTGTTGACAAGCTGTGAGCCTGGAGTGAGGCCTCAGAGAGGAGTCACGTGAGCCTCCCTCT
GGGATCTGGCATGAAGGAGAAATGGATTCTGGATTTTCTGCTCTGGCTTCCCCTGACTTCTCCA
GAATTTAAGACATATCCTGAGACATCTCTTGCTCAACCTCGGCCCAGAATCCCTGAGGATCGAT
CCAGAAACCCAACAACCTCAAAACCTAAAAACATCAAGACCCTTTCCCTGGACACGGACTGGGC
AGAAGTAGCCAGTTCATCAGGTGAGCGAGAGGATGCTGGCAGGGGGTATGAGAAGCATGCCCAG
CCCCCTCCTGGCCTGCTGGCAGCCCATCCTCCTGCTGGTCCTGGGCTCTGTGCTGTCAGGCTCC
GCCACCGGCTGCCCGCCCCGCTGCGAGTGCTCAGCGCAGGACCGAGCAGTGCTCTGTCACCGCA
AGCGCTTTGTGGCGGTGCCCGAGGGCATCCCCACCGAGACTCGCCTGCTGGACCTGGGCAAAAA
CCGCATCAAGACACTCAACCAGGACGAGTTTGCCAGTTTCCCACACCTGGAGGAGCTAGAACTC
AATGAGAACATTGTGAGCGCTGTGGAGCCGGGCGCCTTCAACAACCTCTTCAACCTGAGGACGC
TGGGGCTTCGCAGCAACCGCCTGAAGCTCATCCCGCTGGGCGTCTTCACCGGCCTCAGCAACTT
GACCAAGCTGGACATCAGCGAGAACAAGATCGTCATCCTGCTAGACTACATGTTCCAAGACCTA
TACAACCTCAAGTCGCTGGAGGTCGGCGACAATGACCTCGTCTACATCTCCCATCGAGCCTTCA
GCGGCCTCAACAGCCTGGAACAGCTGACGCTGGAGAAATGCAATCTGACCTCCATCCCCACTGA
GGCACTCTCCCACCTGCATGGCCTCATCGTCCTGCGGCTACGACACCTCAACATCAATGCCATA
CGGGACTACTCCTTCAAGAGGCTGTACCGACTCAAGGTCTTAGAGATCTCCCACTGGCCCTACC
TGGACACCATGACCCCCAACTGCCTCTACGGCCTCAACCTGACATCCCTATCTATCACGCACTG
CAACCTGACAGCCGTGCCCTATCTGGCAGTGCGCCACCTGGTCTATCTCCGTTTCCTCAATCTT
TCCTACAACCCCATCGGTACAATCGAGGGCTCCATGCTGCATGAGCTGCTGCGGTTGCAAGAGA
TCCAACTGGTGGGCGGGCAGCTGGCCGTGGTGGAGCCCTACGCCTTTCGTGGGCTCAATTACCT
GCGTGTGCTCAATGTTTCTGGCAACCAGCTGACCACCCTGGAGGAGTCAGCCTTCCACTCGGTG
GGCAACCTGGAGACGCTCATTCTGGACTCCAACCCACTGGCCTGTGACTGCCGGCTGCTGTGGG
TGTTCCGGCGCCGCTGGCGGCTCAACTTCAACAGGCAGCAGCCTACCTGCGCCACACCTGAGTT
CGTCCAGGGCAAGGAGTTCAAGGACTTCCCCGATGTGCTCCTACCCAACTACTTCACCTGCCGC
CGGGCCCACATCCGGGACCGCAAGGCACAGCAGGTGTTTGTAGATGAGGGCCACACGGTGCAGT
TCGTATGCCGGGCAGATGGCGACCCTCCACCAGCTATCCTTTGGCTCTCACCCCGCAAGCACTT
GGTCTCAGCCAAGAGCAATGGGCGGCTCACAGTCTTCCCTGATGGCACGCTGGAGGTGCGCTAC
GCCCAGGTACAGGACAACGGCACGTACCTGTGCATCGCAGCCAATGCAGGCGGCAACGACTCCA
TGCCCGCCCACTTGCATGTGCGCAGCTACTCGCCTGACTGGCCCCATCAACCCAACAAGACCTT
CGCCTTCATCTCCAACCAGCCAGGCGAGGGAGAGGCCAACAGCACCCGCGCCACTGTGCCTTTC
CCCTTCGACATCAAGACGCTCATCATCGCCACCACCATGGGCTTCATCTCCTTCCTGGGCGTGG
TCCTATTCTGCCTGGTGCTGCTGTTTCTATGGAGCCGGGGCAAAGGCAACACAAAGCACAACAT
CGAAATTGAATATGTGCCCCGGAAATCGGACGCAGGCATCAGCTCAGCTGATGCACCCCGCAAG
TTCAACATGAAGATGATATGAGGATGGGGCAGGGTGGGGGCGCAGGGACCCCCCACTTCCGGGG
GAACACTGGGCAGGGAAGGTGCCTGGCTGCTGCCCACTCACCCCCAGGCCTTCCCACCTTTCCC
TGCCCTCCTCACACACTCTCCCCTCCCCCCACGCGCCCCCGCTGCCACGCCAGCCTCGCCCTCA
CCGCCTGCCCTCCTTCTACCAGGATTTCAGAAGGCCAGGCCTGAGGACCCCGCCTACATAGGGG
CCAGAGTTGACAGACGAATCCAAAGCCGACGAACCACGCGGCAGAGTCAATAATTCAATTAAAA
AAAAAGTTACAAACTTCCTCTGTAACTTGGGTTTCAATAATTAATGGATTTTTATGAAAACTTG
AAATAATAAAAAAAGAAAAAAACTATTTCCTATAGCTAGTCGGAATGCAAACTTTTGACGTCCT
GATGGCTCCAGGGCCTTCTTCCAACTCAGTTTCTTGTTTTTCTCTTCCTCCTTCTCCTCCTCTT
CCTCCTTTCTCTTCTCTTCCCCTGTGGGGAGGGATCACTCAGGAAAACAGGGAAGGAGATTCCA
GCCCCACCCTCTGGCCCACTCTGCTAGGCGCCATTTGGAGCCCTGGTGGCACTCAGCTCCAGGG
CCCAGCTCTAGCTGGCTTTTTGCAGGAAGTAGGGAAGGGGATAGGACTGCCCGGGGGGTGGGGC
TTGTCTGCTGGCTGCCAGGCAGCACTACCAAGGGGAGGTGGGTGCCAGGCTCGGGTGTGGCTGA
AGCTGGGACGGGCTGGGGTCCTCCTGGGGAACAGTACAGTCGGCGGAAAGAGTCAGGAGCCAGA
GGCAGGCTGACTCCTCTCCTCTGGTCCCAGCTCTGCTGCTCACTGTTGTGTGACCTCGAGCAGG
TCGCTGGCCCTCTTGGGCCTCAGTCTCCACATCTGTACAAATGGGAACATTGTCCCTGCCCTGC
CTACCTCACAGGGCTGTTGTGAGGAACTGATGAGATGATGTATGTGAAACACTTTGTAACCTGT
AAAGCGCTGTGCACATGTGTGTGGGTGACTGCTCTCATTATGGTCATTATTTTCTCATTGTGGG
ATGGGATCCCCGTGGGCTCAGGGCTGGGGAGCGAGAGGGGCAGCTCCTGGGGCTCCGATAGGCT
CCTCCTAGGACACTGGCTGGGCTGGAAAACTTAATAGATTCTTCTACCTCTGGCTGAGAGGCCC
CCTAGACGCCAGCTTTGGCCTGGACATGTACAAAGTTGGGAATACCAGCTCTCTCCAGGTCTTA
TTCGCAAGTGTTTATTGAATATCTGATCTATACCACTTCCTGTGTACAGTCCTCAGGGTCAGAG
GCCATTCTAGGGCAGCCTAAAGACAGCGCAAACTGATCCTGTCACCAGCTCTCAATCTTTCCGC
TAAGCCATGCTCTGGGGCCTATCACCGGCTTGGCAGAGGTCTCTTGGATTTGGATCTGGGACCC
AACTACCCGTGAGCTGACCAGGAGAGCCAGACAATAGCTTCCACCTGCACTGTATAGTTCAAAC
CAACTCTAAATGCTCCCAACTCAGCCTGGAGAGGGTTGCCCTGGGCAACAGAGTGACAAGTTAG
GTGGTGGTTTGTCACGTCCCTAGAAAGCATCCTTGGGCCCTGTCTGAAAAGCCAACAGCAGCTC
AGTTGGCCGACCTACTTCTCACTGCACCTTGTGTCTGTGGGCAGAGAGAACATGGCCAGGTCCC
TGGCCTCTCCACTATGGCCTCTCCTCCTATGGACAGCTTCAGTTTGGCCCTAAGTAGGCCTGGG
TGGCCTGCCTCCCATTCATCCACTGGCTAAGGGAAATAAATCTACAGCAATACAGGGACCAAGG
GGCACAGACCAAGCTGCGTGAGCACAATAGGGAAGCCAGTCCTCAGAATCTGGAAACCACCAGG
ATGCAGGGTGTCCATGCCAAGGCCTAGGGGTGAGAGAGCCTGGGGTCAGCACTCAGTCCTTTAC
TCATTCATTCATTCATTCATTCATTCCTCAGGCATCGCTGCTGGGACTCTGCTCCAGCTTAGCT
GATGTCTAAGGCTAGAGCCAGCCTTGCCCTGTTCTCCCAACCACTGGCCAGGACTGCCCTGGTT
CTGGACAAGGCTTGAGCCCTCTGGCGATCTCCTACAAGACTCAGTGGTTAGAAGGTGCTGAGGT
CCAAGGTCAGGTCTGAGTCTAATTCTGTCACTCACTAGCTAGGCCCGATTGTCCTCCAAGCTGG
TTTCTCACCTGCAGAATAAAGTTACTTTGTTCTTGA

hide sequence

RefSeq Acc Id:

XM_039081468 ⟹ XP_038937396

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	57,011,272 - 57,173,090 (-)	NCBI

RefSeq Acc Id:

XM_039081469 ⟹ XP_038937397

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	57,011,272 - 57,030,202 (-)	NCBI

RefSeq Acc Id:

XR_005487818

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	57,146,153 - 57,193,496 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094192	(Get FASTA)	NCBI Sequence Viewer
	XP_006243182	(Get FASTA)	NCBI Sequence Viewer
	XP_008764492	(Get FASTA)	NCBI Sequence Viewer
	XP_017451135	(Get FASTA)	NCBI Sequence Viewer
	XP_017451136	(Get FASTA)	NCBI Sequence Viewer
	XP_038937396	(Get FASTA)	NCBI Sequence Viewer
	XP_038937397	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92632	(Get FASTA)	NCBI Sequence Viewer
	EDL95583	(Get FASTA)	NCBI Sequence Viewer
	EDL95584	(Get FASTA)	NCBI Sequence Viewer
	EDL95585	(Get FASTA)	NCBI Sequence Viewer
	EDL95586	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001094192 ⟸ NM_001100722
- Peptide Label:	precursor
- UniProtKB:	G3V881 (UniProtKB/TrEMBL), Q562A6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQVSERMLAGGMRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVA VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIGTIEGSMLHELLRLQEIQLVG GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRR WRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAHIRDRKAQQVFVDEGHTVQFVCRA DGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL HVRSYSPDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCL VLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI hide sequence

RefSeq Acc Id:

XP_006243182 ⟸ XM_006243120

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLAGGMRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVAVPEGIP
TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI
PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL
EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG
LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIGTIEGSMLHELLRLQEIQLVGGQLAVV
EPYAFRGLNYLRVLNVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN
RQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAHIRDRKAQQVFVDEGHTVQFVCRADGDPPP
AILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRSYS
PDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLW
SRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI

hide sequence

RefSeq Acc Id:

XP_008764492 ⟸ XM_008766270

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLAGGMRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVAVPEGIP
TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI
PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL
EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG
LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIGTIEGSMLHELLRLQEIQLVGGQLAVV
EPYAFRGLNYLRVLNVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN
RQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAHIRDRKAQQVFVDEGHTVQFVCRADGDPPP
AILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRSYS
PDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLW
SRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI

hide sequence

RefSeq Acc Id:

XP_017451135 ⟸ XM_017595646

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLAGGMRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVAVPEGIP
TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI
PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL
EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG
LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIGTIEGSMLHELLRLQEIQLVGGQLAVV
EPYAFRGLNYLRVLNVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN
RQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAHIRDRKAQQVFVDEGHTVQFVCRADGDPPP
AILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRSYS
PDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLW
SRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI

hide sequence

RefSeq Acc Id:

XP_017451136 ⟸ XM_017595647

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLAGGMRSMPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVAVPEGIP
TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI
PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL
EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG
LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIGTIEGSMLHELLRLQEIQLVGGQLAVV
EPYAFRGLNYLRVLNVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN
RQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAHIRDRKAQQVFVDEGHTVQFVCRADGDPPP
AILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRSYS
PDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLW
SRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI

hide sequence

RefSeq Acc Id:

ENSRNOP00000023084 ⟸ ENSRNOT00000023084

RefSeq Acc Id:	XP_038937396 ⟸ XM_039081468
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038937397 ⟸ XM_039081469
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSRNOP00000086992 ⟸ ENSRNOT00000113428

RefSeq Acc Id:

ENSRNOP00000087521 ⟸ ENSRNOT00000114132

RefSeq Acc Id:

ENSRNOP00000078102 ⟸ ENSRNOT00000105816

RefSeq Acc Id:

ENSRNOP00000096831 ⟸ ENSRNOT00000103010

RefSeq Acc Id:

ENSRNOP00000084606 ⟸ ENSRNOT00000096263

RefSeq Acc Id:

ENSRNOP00000080188 ⟸ ENSRNOT00000094295

RefSeq Acc Id:

ENSRNOP00000094597 ⟸ ENSRNOT00000105281

RefSeq Acc Id:

ENSRNOP00000097278 ⟸ ENSRNOT00000111614

Protein Domains

Ig-like

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308668	AgrOrtholog
Ensembl Genes	ENSRNOG00000017193	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000023084	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023084	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7314870	IMAGE-MGC_LOAD
InterPro	Ig-like	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_I-set	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR-contain_N	UniProtKB/TrEMBL
	LRR_5	UniProtKB/TrEMBL
KEGG Report	rno:315691	UniProtKB/TrEMBL
MGC_CLONE	MGC:109332	IMAGE-MGC_LOAD
NCBI Gene	315691	ENTREZGENE
Pfam	I-set	UniProtKB/TrEMBL
	LRR_5	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
PhenoGen	Lingo1	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	LRR	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	G3V881	ENTREZGENE, UniProtKB/TrEMBL
	Q562A6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Lingo1	leucine rich repeat and Ig domain containing 1	Lrrn6a	leucine rich repeat neuronal 6A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Lrrn6a	leucine rich repeat neuronal 6A	Lrrn6a_predicted	leucine rich repeat neuronal 6A (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Lrrn6a_predicted	leucine rich repeat neuronal 6A (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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