Dpy19l1 (dpy-19 like C-mannosyltransferase 1) - Rat Genome Database

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Gene: Dpy19l1 (dpy-19 like C-mannosyltransferase 1) Rattus norvegicus
Analyze
Symbol: Dpy19l1
Name: dpy-19 like C-mannosyltransferase 1
RGD ID: 1305822
Description: Predicted to enable mannosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in nuclear inner membrane. Orthologous to human DPY19L1 (dpy-19 like C-mannosyltransferase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dpy-19 like 1; dpy-19-like 1 (C. elegans); dpy-19-like protein 1; LOC315496; probable C-mannosyltransferase DPY19L1; protein dpy-19 homolog 1; RGD1305822; similar to KIAA0877 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8831,209,025 - 31,297,485 (-)NCBIGRCr8
mRatBN7.2822,933,163 - 23,021,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl822,933,163 - 23,021,751 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx826,967,212 - 27,055,504 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0825,264,454 - 25,352,748 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0823,163,977 - 23,252,275 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0825,582,938 - 25,669,394 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl825,582,938 - 25,669,394 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0825,614,114 - 25,700,693 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4824,072,769 - 24,160,500 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1824,073,528 - 24,160,078 (-)NCBI
Celera824,511,253 - 24,598,078 (-)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19946888  


Genomics

Comparative Map Data
Dpy19l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8831,209,025 - 31,297,485 (-)NCBIGRCr8
mRatBN7.2822,933,163 - 23,021,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl822,933,163 - 23,021,751 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx826,967,212 - 27,055,504 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0825,264,454 - 25,352,748 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0823,163,977 - 23,252,275 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0825,582,938 - 25,669,394 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl825,582,938 - 25,669,394 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0825,614,114 - 25,700,693 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4824,072,769 - 24,160,500 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1824,073,528 - 24,160,078 (-)NCBI
Celera824,511,253 - 24,598,078 (-)NCBICelera
Cytogenetic Map8q13NCBI
DPY19L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38734,928,881 - 35,038,041 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl734,927,292 - 35,038,271 (-)EnsemblGRCh38hg38GRCh38
GRCh37734,968,493 - 35,077,653 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36734,935,018 - 35,044,178 (-)NCBINCBI36Build 36hg18NCBI36
Celera734,950,233 - 35,064,182 (-)NCBICelera
Cytogenetic Map7p14.2NCBI
HuRef734,850,682 - 34,959,739 (-)NCBIHuRef
CHM1_1734,968,025 - 35,077,232 (-)NCBICHM1_1
T2T-CHM13v2.0735,069,558 - 35,178,714 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2735,013,501 - 35,122,613 (-)NCBI
Dpy19l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39924,323,074 - 24,414,436 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl924,323,072 - 24,414,436 (-)EnsemblGRCm39 Ensembl
GRCm38924,411,778 - 24,503,140 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl924,411,776 - 24,503,140 (-)EnsemblGRCm38mm10GRCm38
MGSCv37924,216,222 - 24,307,584 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36924,162,456 - 24,238,321 (-)NCBIMGSCv36mm8
Celera921,668,614 - 21,759,826 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map910.15NCBI
Dpy19l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955560910,499 - 995,059 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955560895,807 - 997,538 (+)NCBIChiLan1.0ChiLan1.0
DPY19L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2639,742,575 - 39,851,291 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1788,067,310 - 88,176,026 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0735,544,932 - 35,653,628 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1735,934,363 - 36,024,127 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl735,937,045 - 36,024,129 (-)Ensemblpanpan1.1panPan2
DPY19L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11446,657,691 - 46,762,531 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1446,658,539 - 46,753,748 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1446,053,500 - 46,195,410 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01446,551,784 - 46,693,618 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1446,599,443 - 46,693,881 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11446,659,557 - 46,801,368 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01446,381,887 - 46,477,726 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01446,709,616 - 46,851,600 (-)NCBIUU_Cfam_GSD_1.0
Dpy19l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511891,583,893 - 91,658,710 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647810,795,658 - 10,870,303 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647810,626,328 - 10,870,360 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DPY19L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1838,801,334 - 38,903,662 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11838,801,343 - 39,084,190 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21842,632,534 - 42,735,195 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103226237
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12123,390,290 - 23,497,607 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366619664,901 - 94,853 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dpy19l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624953613,729 - 703,252 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624953614,690 - 703,119 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dpy19l1
304 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:602
Count of miRNA genes:271
Interacting mature miRNAs:331
Transcripts:ENSRNOT00000036738
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat

Markers in Region
RH142243  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2822,935,095 - 22,935,245 (+)MAPPERmRatBN7.2
Rnor_6.0825,584,946 - 25,585,095NCBIRnor6.0
Rnor_5.0825,616,122 - 25,616,271UniSTSRnor5.0
RGSC_v3.4824,074,702 - 24,074,851UniSTSRGSC3.4
Celera824,513,186 - 24,513,335UniSTS
RH 3.4 Map8205.09UniSTS
Cytogenetic Map8q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000036738   ⟹   ENSRNOP00000033222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl822,933,163 - 23,021,751 (-)Ensembl
Rnor_6.0 Ensembl825,582,938 - 25,669,394 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112774   ⟹   ENSRNOP00000078838
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl822,933,163 - 23,021,751 (-)Ensembl
RefSeq Acc Id: NM_001191791   ⟹   NP_001178720
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8831,209,025 - 31,297,319 (-)NCBI
mRatBN7.2822,933,163 - 23,021,461 (-)NCBI
Rnor_6.0825,582,938 - 25,669,394 (-)NCBI
Rnor_5.0825,614,114 - 25,700,693 (-)NCBI
Celera824,511,253 - 24,598,078 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081362   ⟹   XP_038937290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8831,209,025 - 31,297,485 (-)NCBI
mRatBN7.2822,933,163 - 23,021,461 (-)NCBI
RefSeq Acc Id: XM_039081363   ⟹   XP_038937291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8831,209,025 - 31,297,157 (-)NCBI
mRatBN7.2822,933,163 - 23,021,291 (-)NCBI
RefSeq Acc Id: NP_001178720   ⟸   NM_001191791
- UniProtKB: D4AD75 (UniProtKB/TrEMBL),   A0A8I6G3Y6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000033222   ⟸   ENSRNOT00000036738
RefSeq Acc Id: XP_038937290   ⟸   XM_039081362
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038937291   ⟸   XM_039081363
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000078838   ⟸   ENSRNOT00000112774

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AD75-F1-model_v2 AlphaFold D4AD75 1-746 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695811
Promoter ID:EPDNEW_R6335
Type:initiation region
Name:Dpy19l1_1
Description:dpy-19 like C-mannosyltransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0825,669,454 - 25,669,514EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305822 AgrOrtholog
BioCyc Gene G2FUF-31347 BioCyc
Ensembl Genes ENSRNOG00000026589 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055012301 UniProtKB/Swiss-Prot
  ENSRNOG00060025531 UniProtKB/Swiss-Prot
  ENSRNOG00065015158 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000036738.7 UniProtKB/Swiss-Prot
  ENSRNOT00000112774.1 UniProtKB/TrEMBL
  ENSRNOT00055020929 UniProtKB/Swiss-Prot
  ENSRNOT00060044256 UniProtKB/Swiss-Prot
  ENSRNOT00065025119 UniProtKB/Swiss-Prot
InterPro Dpy-19 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  Dpy19L1 UniProtKB/Swiss-Prot
KEGG Report rno:315496 UniProtKB/Swiss-Prot
NCBI Gene 315496 ENTREZGENE
PANTHER C-MANNOSYLTRANSFERASE DPY19L1-RELATED UniProtKB/Swiss-Prot
  DPY-19-LIKE 1, LIKE (H. SAPIENS) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31488:SF5 UniProtKB/TrEMBL
Pfam Dpy19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dpy19l1 PhenoGen
RatGTEx ENSRNOG00000026589 RatGTEx
  ENSRNOG00055012301 RatGTEx
  ENSRNOG00060025531 RatGTEx
  ENSRNOG00065015158 RatGTEx
UniProt A0A8I6G3Y6 ENTREZGENE, UniProtKB/TrEMBL
  D19L1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-16 Dpy19l1  dpy-19 like C-mannosyltransferase 1  Dpy19l1  dpy-19 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-08-18 Dpy19l1  dpy-19 like 1  Dpy19l1  dpy-19-like 1 (C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Dpy19l1  dpy-19-like 1 (C. elegans)   Dpy19l1_predicted  dpy-19-like 1 (C. elegans) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Dpy19l1_predicted  dpy-19-like 1 (C. elegans) (predicted)  RGD1305822_predicted  similar to KIAA0877 protein (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1305822_predicted  similar to KIAA0877 protein (predicted)  LOC315496_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315496_predicted  similar to KIAA0877 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL