D8Rat188 Marker Search Result - Rat Genome Database

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Marker: D8Rat188

Symbol: D8Rat188
Previously known as: oxsts11554; R0301-C10; 
RGD ID: 42851
Expected Size: 123 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8850,332,346 - 50,332,469 (+)Marker Load Pipeline
mRatBN7.2841,435,262 - 41,435,385 (+)MAPPERmRatBN7.2
Rnor_6.0845,272,853 - 45,272,975NCBIRnor6.0
Rnor_5.0843,751,341 - 43,751,463UniSTSRnor5.0
RGSC_v3.4844,039,525 - 44,039,648RGDRGSC3.4
RGSC_v3.4844,039,526 - 44,039,648UniSTSRGSC3.4
RGSC_v3.1844,048,291 - 44,048,414RGD
Celera841,032,972 - 41,033,094UniSTS
SHRSP x BN Map832.42UniSTS
SHRSP x BN Map832.42RGD
Cytogenetic Map8q22UniSTS
Is Marker For: Genes:   Ubash3b  




#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer TGGTGCACAGACATAATGCA
Reverse Primer TTGTTGTTTTGCTTTATATTTTGGA
 
Template 
CGAGGATCCCACCAGGCACACACATGGTGCACAGACATAATGCAGGCATACACACACACACACA
CACACACACACACACACACACACACACACGGGCGGGGGGATAAAGTAAACCTTAAAAAAGGCTT
TTATGATCCAAAATATAAAGCAAAACAACAAAACTACTAATTATTCAAAAAGAGAGAAGTGGGT
ACCGAGCTCGAATTCGTAATCATGGTTCATAGNTGTTTCCTGTGTGAAATTGTTATCCGCNCAC
AATTTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAG
CTAACTCACATTAATTGCGTTGCGCTACACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCA
GCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGNGGTTTGCGTATTGGGCGCCAGGGTGGT
TTTTCTTTTCACCAGTGAGACGGGCAACAGCTGATTGCCCTTCACCGCCTGGCCCTGAGAGAGT
TGCGCAAGCGGTCCACGCTGGTTTGCCCCAGCAGGCGAAAATCCTGTTTGATGGTGGTTCCGAA
ATCGGCAAAATCCCTTATAAATCAAAAGAATAGCCCGAGATAGGGTTGAGTGTTGTTCAGTTTG
GAAAAGAGTCATATTAAGAACGTGGATCCANGTCNAGGGGAAACGTTATCGGGGATGCACTAGT
GAACTCACCAATCNGTTTTGGGGTGAGTGNGTAACTAATCGNNCTAAGGNGCCCGATTTGNNTG
CGGANNNNGNNGTGGAGANGAGGGAGAAGGANNGNNGNNGCTGNANTTNGT


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1310357Ubash3bubiquitin associated and SH3 domain containing, B84138541941532248Rat
GenBank Nucleotide JH616378.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 56 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83084815442692818Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat

1 to 10 of 56 rows


Database
Acc Id
Source(s)
NCBI Gene 315579 UniSTS