Crabp1 (cellular retinoic acid binding protein 1) - Rat Genome Database

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Gene: Crabp1 (cellular retinoic acid binding protein 1) Rattus norvegicus
Analyze
Symbol: Crabp1
Name: cellular retinoic acid binding protein 1
RGD ID: 2400
Description: Enables retinoic acid binding activity. Predicted to be involved in fatty acid transport. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Orthologous to human CRABP1 (cellular retinoic acid binding protein 1); PARTICIPATES IN retinoic acid metabolic pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5,5'-tetrabromobisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cellular retinoic acid binding protein 1 (mapped); cellular retinoic acid binding protein I; cellular retinoic acid-binding protein 1; cellular retinoic acid-binding protein I; CRABP-I; Crabp1_mapped
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,047,431 - 64,055,469 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl864,047,060 - 64,055,470 (+)EnsemblGRCr8
mRatBN7.2855,138,363 - 55,159,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,151,285 - 55,159,360 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx860,684,984 - 60,693,017 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0858,963,976 - 58,972,009 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0856,828,222 - 56,836,255 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd864,856,800 - 64,864,854 (+)NCBI
Lyon_Normotensive867,049,362 - 67,057,416 (+)NCBI
Lyon_Hypertensive865,488,373 - 65,496,411 (+)NCBI
F344_StmMcwi856,936,497 - 56,944,529 (+)NCBI
Rnor_6.0859,344,097 - 59,352,135 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl859,344,083 - 59,352,132 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0857,926,233 - 57,934,271 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4858,317,337 - 58,325,375 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera854,638,866 - 54,646,904 (+)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
9-cis-retinoic acid  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calciol  (ISO)
calcitriol  (ISO)
carmustine  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
choline  (ISO)
cisplatin  (ISO)
cytarabine  (ISO)
DDE  (EXP)
diarsenic trioxide  (ISO)
diazinon  (EXP)
dorsomorphin  (ISO)
entinostat  (ISO)
folic acid  (ISO)
fonofos  (ISO)
genistein  (ISO)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
L-methionine  (ISO)
LDN-193189  (ISO)
lead diacetate  (EXP)
methamphetamine  (EXP)
methapyrilene  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
parathion  (ISO)
pentanal  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phytoestrogen  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
progesterone  (ISO)
propanal  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
tebuconazole  (ISO)
terbufos  (ISO)
thapsigargin  (ISO)
titanium dioxide  (ISO)
triadimefon  (EXP)
tributylstannane  (EXP)
trichostatin A  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IBA)
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Expression of the cellular retinoic acid binding proteins, type II and type I, in mature rat olfactory epithelium. Asson-Batres MA, etal., Cell Tissue Res 2003 Apr;312(1):9-19. Epub 2003 Mar 18.
2. Affinity purification of retinoic acid-binding proteins using immobilized 4-(2-hydroxyethoxy)retinoic acid. Chapman JM and Curley RW Jr, Protein Expr Purif. 1990 Sep;1(1):63-9.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Physiological insights into all-trans-retinoic acid biosynthesis. Napoli JL Biochim Biophys Acta. 2012 Jan;1821(1):152-67. Epub 2011 May 19.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:6274689   PMID:15057822   PMID:19389377   PMID:23977218  


Genomics

Comparative Map Data
Crabp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,047,431 - 64,055,469 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl864,047,060 - 64,055,470 (+)EnsemblGRCr8
mRatBN7.2855,138,363 - 55,159,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,151,285 - 55,159,360 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx860,684,984 - 60,693,017 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0858,963,976 - 58,972,009 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0856,828,222 - 56,836,255 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd864,856,800 - 64,864,854 (+)NCBI
Lyon_Normotensive867,049,362 - 67,057,416 (+)NCBI
Lyon_Hypertensive865,488,373 - 65,496,411 (+)NCBI
F344_StmMcwi856,936,497 - 56,944,529 (+)NCBI
Rnor_6.0859,344,097 - 59,352,135 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl859,344,083 - 59,352,132 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0857,926,233 - 57,934,271 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4858,317,337 - 58,325,375 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera854,638,866 - 54,646,904 (+)NCBICelera
Cytogenetic Map8q24NCBI
CRABP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381578,340,353 - 78,348,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1578,340,260 - 78,348,250 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371578,632,695 - 78,640,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361576,419,750 - 76,427,622 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341576,419,749 - 76,427,622NCBI
Celera1555,569,189 - 55,577,095 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1555,390,694 - 55,398,599 (+)NCBIHuRef
CHM1_11578,750,642 - 78,758,548 (+)NCBICHM1_1
T2T-CHM13v2.01576,202,952 - 76,210,824 (+)NCBIT2T-CHM13v2.0
Crabp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39954,672,032 - 54,680,394 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl954,671,171 - 54,680,403 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38954,764,748 - 54,773,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl954,764,748 - 54,773,110 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37954,612,615 - 54,620,916 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36954,562,945 - 54,571,246 (+)NCBIMGSCv36mm8
Celera952,009,200 - 52,017,494 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.76NCBI
Crabp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955450810,151 - 817,059 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_004955450810,206 - 817,011 (+)NCBIChiLan1.0ChiLan1.0
CRABP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21667,554,060 - 67,561,964 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11571,719,914 - 71,727,813 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01557,269,794 - 57,277,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11576,234,401 - 76,242,311 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1576,234,401 - 76,242,311 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
CRABP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1358,446,222 - 58,449,789 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha361,134,622 - 61,140,866 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0358,911,175 - 58,917,395 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl358,910,813 - 58,917,389 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1358,407,571 - 58,413,815 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0358,615,324 - 58,621,565 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,964,662 - 58,970,906 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Crabp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap156,826,541 - 6,833,583 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_024408640118,817,578 - 118,824,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647136,662,647 - 36,672,606 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647136,665,641 - 36,672,626 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRABP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl747,602,192 - 47,608,970 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1747,602,316 - 47,608,865 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2753,156,458 - 53,163,020 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRABP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap12654,441,137 - 54,449,618 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666048136,799,993 - 136,808,476 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1264,987,927 - 4,996,431 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl264,987,882 - 4,996,343 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Crabp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248942,538,708 - 2,545,625 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046248942,538,230 - 2,545,698 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Crabp1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1848,833,872 - 48,842,073 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in Crabp1
49 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:43
Count of miRNA genes:35
Interacting mature miRNAs:43
Transcripts:ENSRNOT00000031175
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85899169791341052Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)863404444108404444Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84961020468373388Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)85076395167219641Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85899169791341052Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)860248093105248093Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85899169791341052Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat

Markers in Region
AA875025  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2855,159,145 - 55,159,254 (+)MAPPERmRatBN7.2
Rnor_6.0859,351,921 - 59,352,029NCBIRnor6.0
Rnor_5.0857,934,057 - 57,934,165UniSTSRnor5.0
RGSC_v3.4858,325,161 - 58,325,269UniSTSRGSC3.4
Celera854,646,690 - 54,646,798UniSTS
RH 3.4 Map8595.1UniSTS
Cytogenetic Map8q24UniSTS
Crabp1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2855,152,011 - 55,152,184 (+)MAPPERmRatBN7.2
Rnor_6.0859,344,787 - 59,344,959NCBIRnor6.0
Rnor_5.0857,926,923 - 57,927,095UniSTSRnor5.0
RGSC_v3.4858,318,027 - 58,318,199UniSTSRGSC3.4
Celera854,639,556 - 54,639,728UniSTS
Cytogenetic Map8q24UniSTS
Crabp1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2855,151,460 - 55,152,114 (+)MAPPERmRatBN7.2
Rnor_6.0859,344,236 - 59,344,889NCBIRnor6.0
Rnor_5.0857,926,372 - 57,927,025UniSTSRnor5.0
RGSC_v3.4858,317,476 - 58,318,129UniSTSRGSC3.4
Celera854,639,005 - 54,639,658UniSTS
Cytogenetic Map8q24UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
183 122 555 819 3934 293 801 62 158 382 140 156 3393 1548 420 3832 25 1266 613 684 160 158

Sequence


Ensembl Acc Id: ENSRNOT00000031175   ⟹   ENSRNOP00000033840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl864,047,060 - 64,055,470 (+)Ensembl
mRatBN7.2 Ensembl855,151,322 - 55,159,360 (+)Ensembl
Rnor_6.0 Ensembl859,344,083 - 59,352,132 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104699   ⟹   ENSRNOP00000081333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl864,047,368 - 64,055,470 (+)Ensembl
mRatBN7.2 Ensembl855,151,285 - 55,159,360 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111051   ⟹   ENSRNOP00000081926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl864,047,406 - 64,051,555 (+)Ensembl
mRatBN7.2 Ensembl855,151,322 - 55,155,446 (+)Ensembl
RefSeq Acc Id: NM_001105716   ⟹   NP_001099186
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,047,431 - 64,055,469 (+)NCBI
mRatBN7.2855,151,322 - 55,159,360 (+)NCBI
Dahl_SR_JrHsd864,856,800 - 64,864,854 (+)NCBI
Lyon_Normotensive867,049,362 - 67,057,416 (+)NCBI
Lyon_Hypertensive865,488,373 - 65,496,411 (+)NCBI
F344_StmMcwi856,936,497 - 56,944,529 (+)NCBI
Rnor_6.0859,344,097 - 59,352,135 (+)NCBI
Rnor_5.0857,926,233 - 57,934,271 (+)NCBI
RGSC_v3.4858,317,337 - 58,325,375 (+)RGD
Celera854,638,866 - 54,646,904 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099186 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL95550 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000081333
  ENSRNOP00055044685
  ENSRNOP00060024786
  ENSRNOP00065025105
GenBank Protein P62966 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001099186   ⟸   NM_001105716
- UniProtKB: P62966 (UniProtKB/Swiss-Prot),   A0A8I5ZTI6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000033840   ⟸   ENSRNOT00000031175
Ensembl Acc Id: ENSRNOP00000081333   ⟸   ENSRNOT00000104699
Ensembl Acc Id: ENSRNOP00000081926   ⟸   ENSRNOT00000111051
Protein Domains
Cytosolic fatty-acid binding proteins

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62966-F1-model_v2 AlphaFold P62966 1-137 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695984
Promoter ID:EPDNEW_R6509
Type:multiple initiation site
Name:Crabp1_1
Description:cellular retinoic acid binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0859,344,096 - 59,344,156EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2400 AgrOrtholog
BioCyc Gene G2FUF-30391 BioCyc
Ensembl Genes ENSRNOG00000023633 Ensembl, ENTREZGENE
  ENSRNOG00055031143 UniProtKB/Swiss-Prot
  ENSRNOG00060017871 UniProtKB/Swiss-Prot
  ENSRNOG00065018768 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000104699 ENTREZGENE
  ENSRNOT00055053996 UniProtKB/Swiss-Prot
  ENSRNOT00060030635 UniProtKB/Swiss-Prot
  ENSRNOT00065031508 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot
InterPro Calycin UniProtKB/Swiss-Prot
  Fatty_acid-bd UniProtKB/Swiss-Prot
  ILBP UniProtKB/Swiss-Prot
  Lipocln_cytosolic_FA-bd_dom UniProtKB/Swiss-Prot
KEGG Report rno:25061 UniProtKB/Swiss-Prot
NCBI Gene 25061 ENTREZGENE
PANTHER PTHR11955 UniProtKB/Swiss-Prot
Pfam Lipocalin UniProtKB/Swiss-Prot
PhenoGen Crabp1 PhenoGen
PRINTS FATTYACIDBP UniProtKB/Swiss-Prot
PROSITE FABP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000023633 RatGTEx
  ENSRNOG00055031143 RatGTEx
  ENSRNOG00060017871 RatGTEx
  ENSRNOG00065018768 RatGTEx
Superfamily-SCOP SSF50814 UniProtKB/Swiss-Prot
UniProt A0A8I5ZTI6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G7U4_RAT UniProtKB/TrEMBL
  A0ACJ1LSR8_RAT UniProtKB/TrEMBL
  P62966 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P02695 UniProtKB/Swiss-Prot
  P02697 UniProtKB/Swiss-Prot
  P15780 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-12-12 Crabp1  cellular retinoic acid binding protein 1  Crabp1_mapped  cellular retinoic acid binding protein 1 (mapped)  Symbol and Name updated 1299863 APPROVED
2006-12-12 Crabp1_mapped  cellular retinoic acid binding protein 1 (mapped)  Crabp1_predicted  cellular retinoic acid binding protein 1 (predicted)  Data merged from RGD:1581480 737654 APPROVED
2005-11-17 Crabp1_mapped  cellular retinoic acid binding protein 1 (mapped)      Symbol and Name updated 1556543 APPROVED
2002-06-10 Crabp1  Cellular retinoic acid-binding protein 1      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization cytosolic protein 1300047
gene_expression expressed in postnatal olfactory epithelium 1300047
gene_physical_interaction binds all-trans retinoic acid 1300047
gene_process may play a role in neurogenesis 1300047