CRABP1 (cellular retinoic acid binding protein 1) - Rat Genome Database

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Gene: CRABP1 (cellular retinoic acid binding protein 1) Homo sapiens
Analyze
Symbol: CRABP1
Name: cellular retinoic acid binding protein 1
RGD ID: 1345653
HGNC Page HGNC:2338
Description: Predicted to enable fatty acid binding activity and retinoic acid binding activity. Predicted to be involved in fatty acid transport. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: cellular retinoic acid-binding protein 1; cellular retinoic acid-binding protein I; CRABP; CRABP-I; CRABPI; RBP5
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381578,340,353 - 78,348,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1578,340,353 - 78,348,225 (+)EnsemblGRCh38hg38GRCh38
GRCh371578,632,695 - 78,640,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361576,419,750 - 76,427,622 (+)NCBINCBI36Build 36hg18NCBI36
Build 341576,419,749 - 76,427,622NCBI
Celera1555,569,189 - 55,577,095 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1555,390,694 - 55,398,599 (+)NCBIHuRef
CHM1_11578,750,642 - 78,758,548 (+)NCBICHM1_1
T2T-CHM13v2.01576,202,952 - 76,210,824 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (EXP)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP)
Aflatoxin B2 alpha  (EXP)
all-trans-retinoic acid  (EXP,ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
Aroclor 1254  (ISO)
arsenous acid  (EXP)
atrazine  (EXP)
benzo[a]pyrene  (EXP)
benzo[e]pyrene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
calciol  (ISO)
calcitriol  (EXP)
carmustine  (EXP)
cefaloridine  (ISO)
CGP 52608  (EXP)
choline  (ISO)
cisplatin  (EXP)
cytarabine  (EXP)
DDE  (ISO)
diarsenic trioxide  (EXP)
diazinon  (ISO)
dorsomorphin  (EXP)
entinostat  (EXP)
folic acid  (ISO)
fonofos  (EXP)
genistein  (ISO)
GW 4064  (ISO)
hydrogen peroxide  (EXP)
L-methionine  (ISO)
lead diacetate  (ISO)
methamphetamine  (ISO)
methapyrilene  (EXP)
methimazole  (ISO)
methylmercury chloride  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (ISO)
panobinostat  (EXP)
paracetamol  (ISO)
parathion  (EXP)
pentanal  (EXP)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (EXP)
phytoestrogen  (EXP)
pirinixic acid  (ISO)
poly(I:C)  (ISO)
progesterone  (ISO)
propanal  (EXP)
SB 431542  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (ISO)
tebuconazole  (EXP)
terbufos  (EXP)
thapsigargin  (EXP)
titanium dioxide  (ISO)
triadimefon  (ISO)
tributylstannane  (ISO)
trichostatin A  (EXP)
tunicamycin  (EXP)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,TAS)
nucleus  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Physiological insights into all-trans-retinoic acid biosynthesis. Napoli JL Biochim Biophys Acta. 2012 Jan;1821(1):152-67. Epub 2011 May 19.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1309505   PMID:1654334   PMID:2825608   PMID:8999826   PMID:9005841   PMID:9154115   PMID:9704013   PMID:12477932   PMID:12640681   PMID:14605320   PMID:14713576   PMID:15281009  
PMID:15489334   PMID:15515157   PMID:15607035   PMID:16169070   PMID:16254461   PMID:16344560   PMID:17167179   PMID:17438526   PMID:17623056   PMID:17727842   PMID:18000064   PMID:19087254  
PMID:20571827   PMID:20571834   PMID:20634891   PMID:21270509   PMID:21319273   PMID:21697133   PMID:21873635   PMID:21900206   PMID:24269351   PMID:24626200   PMID:25034531   PMID:26124181  
PMID:26142905   PMID:26843908   PMID:27416800   PMID:28514442   PMID:29321030   PMID:29791485   PMID:30728260   PMID:31344789   PMID:32013828   PMID:32296183   PMID:32527063   PMID:33832420  
PMID:33961781   PMID:35156780   PMID:35417033   PMID:38334954  


Genomics

Comparative Map Data
CRABP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381578,340,353 - 78,348,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1578,340,353 - 78,348,225 (+)EnsemblGRCh38hg38GRCh38
GRCh371578,632,695 - 78,640,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361576,419,750 - 76,427,622 (+)NCBINCBI36Build 36hg18NCBI36
Build 341576,419,749 - 76,427,622NCBI
Celera1555,569,189 - 55,577,095 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1555,390,694 - 55,398,599 (+)NCBIHuRef
CHM1_11578,750,642 - 78,758,548 (+)NCBICHM1_1
T2T-CHM13v2.01576,202,952 - 76,210,824 (+)NCBIT2T-CHM13v2.0
Crabp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39954,672,032 - 54,680,394 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl954,672,032 - 54,680,394 (+)EnsemblGRCm39 Ensembl
GRCm38954,764,748 - 54,773,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl954,764,748 - 54,773,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv37954,612,615 - 54,620,916 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36954,562,945 - 54,571,246 (+)NCBIMGSCv36mm8
Celera952,009,200 - 52,017,494 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.76NCBI
Crabp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,047,431 - 64,055,469 (+)NCBIGRCr8
mRatBN7.2855,138,363 - 55,159,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,151,285 - 55,159,360 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx860,684,984 - 60,693,017 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0858,963,976 - 58,972,009 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0856,828,222 - 56,836,255 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0859,344,097 - 59,352,135 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl859,344,083 - 59,352,132 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0857,926,233 - 57,934,271 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4858,317,337 - 58,325,375 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera854,638,866 - 54,646,904 (+)NCBICelera
Cytogenetic Map8q24NCBI
Crabp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955450810,151 - 817,059 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955450810,206 - 817,011 (+)NCBIChiLan1.0ChiLan1.0
CRABP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21667,554,060 - 67,561,964 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11571,719,914 - 71,727,813 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01557,269,794 - 57,277,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11576,234,401 - 76,242,311 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1576,234,401 - 76,242,311 (+)Ensemblpanpan1.1panPan2
CRABP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1358,446,222 - 58,449,789 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha361,134,622 - 61,140,866 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0358,911,175 - 58,917,395 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1358,407,571 - 58,413,815 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0358,615,324 - 58,621,565 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,964,662 - 58,970,906 (+)NCBIUU_Cfam_GSD_1.0
Crabp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640118,817,578 - 118,824,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647136,662,647 - 36,672,606 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647136,665,641 - 36,672,626 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRABP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl747,602,192 - 47,608,970 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1747,602,316 - 47,608,865 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2753,156,458 - 53,163,020 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRABP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1264,987,927 - 4,996,431 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl264,987,882 - 4,996,343 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048136,799,993 - 136,808,476 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crabp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248942,538,230 - 2,545,698 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248942,538,708 - 2,545,625 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CRABP1
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 15q24.3-25.1(chr15:77640317-78459174)x3 copy number gain See cases [RCV000050915] Chr15:77640317..78459174 [GRCh38]
Chr15:77932659..78751516 [GRCh37]
Chr15:75719714..76538571 [NCBI36]
Chr15:15q24.3-25.1		 uncertain significance
GRCh38/hg38 15q24.2-26.3(chr15:75307767-101723215)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052346]|See cases [RCV000052346] Chr15:75307767..101723215 [GRCh38]
Chr15:75600108..102263418 [GRCh37]
Chr15:73387161..100080941 [NCBI36]
Chr15:15q24.2-26.3		 pathogenic
GRCh38/hg38 15q24.3-26.3(chr15:77543797-101843411)x3 copy number gain See cases [RCV000052347] Chr15:77543797..101843411 [GRCh38]
Chr15:77836139..102383614 [GRCh37]
Chr15:75623194..100201137 [NCBI36]
Chr15:15q24.3-26.3		 pathogenic
GRCh38/hg38 15q24.2-25.1(chr15:76006154-79982417)x1 copy number loss See cases [RCV000137079] Chr15:76006154..79982417 [GRCh38]
Chr15:76298495..80274759 [GRCh37]
Chr15:74085550..78061814 [NCBI36]
Chr15:15q24.2-25.1		 pathogenic|uncertain significance
GRCh38/hg38 15q25.1(chr15:78198708-78912913)x3 copy number gain See cases [RCV000139779] Chr15:78198708..78912913 [GRCh38]
Chr15:78491050..79205255 [GRCh37]
Chr15:76278105..76992310 [NCBI36]
Chr15:15q25.1		 likely benign
GRCh38/hg38 15q23-25.1(chr15:70025300-78705993)x1 copy number loss See cases [RCV000141666] Chr15:70025300..78705993 [GRCh38]
Chr15:70317639..78998335 [GRCh37]
Chr15:68104693..76785390 [NCBI36]
Chr15:15q23-25.1		 pathogenic
GRCh38/hg38 15q22.2-26.3(chr15:59828460-101920998)x3 copy number gain See cases [RCV000142915] Chr15:59828460..101920998 [GRCh38]
Chr15:60120659..102461201 [GRCh37]
Chr15:57907951..100278724 [NCBI36]
Chr15:15q22.2-26.3		 pathogenic
GRCh38/hg38 15q23-26.3(chr15:72154949-101920998)x3 copy number gain See cases [RCV000143019] Chr15:72154949..101920998 [GRCh38]
Chr15:72447290..102461201 [GRCh37]
Chr15:70234344..100278724 [NCBI36]
Chr15:15q23-26.3		 pathogenic
GRCh37/hg19 15q24.2-26.3(chr15:76061144-102429112)x3 copy number gain See cases [RCV000511332] Chr15:76061144..102429112 [GRCh37]
Chr15:15q24.2-26.3		 pathogenic
GRCh37/hg19 15q22.31-26.3(chr15:64637227-102509910)x3 copy number gain See cases [RCV000240602] Chr15:64637227..102509910 [GRCh37]
Chr15:15q22.31-26.3		 pathogenic
GRCh37/hg19 15q22.1-26.3(chr15:59297293-102480888)x3 copy number gain not provided [RCV000415836] Chr15:59297293..102480888 [GRCh37]
Chr15:15q22.1-26.3		 likely pathogenic
GRCh37/hg19 15q15.1-26.3(chr15:41745084-102354798)x4 copy number gain See cases [RCV000447123] Chr15:41745084..102354798 [GRCh37]
Chr15:15q15.1-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4 copy number gain See cases [RCV000447765] Chr15:20733395..102511616 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3 copy number gain See cases [RCV000510717] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112) copy number gain See cases [RCV000512019] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
Single allele duplication not provided [RCV000677926] Chr15:31115047..102354857 [GRCh37]
Chr15:15q13.2-26.3		 pathogenic
GRCh37/hg19 15q23-26.3(chr15:71329220-102270758)x3 copy number gain not provided [RCV000683703] Chr15:71329220..102270758 [GRCh37]
Chr15:15q23-26.3		 pathogenic
GRCh37/hg19 15q24.3-25.1(chr15:78193071-78767884)x3 copy number gain not provided [RCV000683711] Chr15:78193071..78767884 [GRCh37]
Chr15:15q24.3-25.1		 uncertain significance
GRCh37/hg19 15q24.3-26.3(chr15:77479244-102429112)x3 copy number gain not provided [RCV000683710] Chr15:77479244..102429112 [GRCh37]
Chr15:15q24.3-26.3		 pathogenic
GRCh37/hg19 15q25.1(chr15:78609853-78729243)x3 copy number gain not provided [RCV000751361] Chr15:78609853..78729243 [GRCh37]
Chr15:15q25.1		 benign
GRCh37/hg19 15q25.1(chr15:78609853-78729739)x3 copy number gain not provided [RCV000751362] Chr15:78609853..78729739 [GRCh37]
Chr15:15q25.1		 benign
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3 copy number gain not provided [RCV000751155] Chr15:20016811..102493540 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3 copy number gain not provided [RCV000751156] Chr15:20071673..102461162 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
NC_000015.9:g.(?_32964879)_(91358519_?)dup duplication Bloom syndrome [RCV001343104]|Familial colorectal cancer [RCV001325176] Chr15:32964879..91358519 [GRCh37]
Chr15:15q13.3-26.1		 uncertain significance
GRCh37/hg19 15q25.1(chr15:78488482-78757311)x3 copy number gain not provided [RCV002474985] Chr15:78488482..78757311 [GRCh37]
Chr15:15q25.1		 uncertain significance
NM_004378.3(CRABP1):c.284A>T (p.His95Leu) single nucleotide variant not specified [RCV004214244] Chr15:78343533 [GRCh38]
Chr15:78635875 [GRCh37]
Chr15:15q25.1		 uncertain significance
NM_004378.3(CRABP1):c.181A>C (p.Thr61Pro) single nucleotide variant not specified [RCV004110595] Chr15:78341153 [GRCh38]
Chr15:78633495 [GRCh37]
Chr15:15q25.1		 uncertain significance
GRCh37/hg19 15q24.3-26.3(chr15:77512817-102035027)x3 copy number gain not provided [RCV002475797] Chr15:77512817..102035027 [GRCh37]
Chr15:15q24.3-26.3		 pathogenic
GRCh37/hg19 15q22.33-26.1(chr15:67358491-91644328)x3 copy number gain not provided [RCV003222839] Chr15:67358491..91644328 [GRCh37]
Chr15:15q22.33-26.1		 pathogenic
GRCh37/hg19 15q24.1-26.3(chr15:75165490-102520892)x3 copy number gain See cases [RCV003329502] Chr15:75165490..102520892 [GRCh37]
Chr15:15q24.1-26.3		 pathogenic
NM_004378.3(CRABP1):c.245G>T (p.Cys82Phe) single nucleotide variant not specified [RCV004338600] Chr15:78341217 [GRCh38]
Chr15:78633559 [GRCh37]
Chr15:15q25.1		 uncertain significance
NM_004378.3(CRABP1):c.409G>C (p.Glu137Gln) single nucleotide variant not specified [RCV004374851] Chr15:78347972 [GRCh38]
Chr15:78640314 [GRCh37]
Chr15:15q25.1		 uncertain significance
NM_004378.3(CRABP1):c.376G>A (p.Asp126Asn) single nucleotide variant not specified [RCV004374850] Chr15:78347939 [GRCh38]
Chr15:78640281 [GRCh37]
Chr15:15q25.1		 uncertain significance
NM_004378.3(CRABP1):c.290C>G (p.Thr97Arg) single nucleotide variant not specified [RCV004374849] Chr15:78343539 [GRCh38]
Chr15:78635881 [GRCh37]
Chr15:15q25.1		 uncertain significance
NM_004378.3(CRABP1):c.86T>C (p.Leu29Pro) single nucleotide variant not specified [RCV004611202] Chr15:78341058 [GRCh38]
Chr15:78633400 [GRCh37]
Chr15:15q25.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:539
Count of miRNA genes:366
Interacting mature miRNAs:390
Transcripts:ENST00000299529, ENST00000406419, ENST00000560753
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
Crabp1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371578,633,391 - 78,633,563UniSTSGRCh37
Build 361576,420,446 - 76,420,618RGDNCBI36
Celera1555,569,914 - 55,570,086RGD
HuRef1555,391,419 - 55,391,591UniSTS
D15S1227  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371578,640,323 - 78,640,560UniSTSGRCh37
Build 361576,427,378 - 76,427,615RGDNCBI36
Celera1555,576,846 - 55,577,083RGD
Cytogenetic Map15q24UniSTS
HuRef1555,398,350 - 55,398,587UniSTS
TNG Radiation Hybrid Map1530090.0UniSTS
Stanford-G3 RH Map152822.0UniSTS
GeneMap99-GB4 RH Map15269.42UniSTS
Whitehead-RH Map15289.6UniSTS
NCBI RH Map15513.2UniSTS
GeneMap99-G3 RH Map152817.0UniSTS
STS-W95693  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371578,640,336 - 78,640,542UniSTSGRCh37
Build 361576,427,391 - 76,427,597RGDNCBI36
Celera1555,576,859 - 55,577,065RGD
Cytogenetic Map15q24UniSTS
HuRef1555,398,363 - 55,398,569UniSTS
GeneMap99-GB4 RH Map15271.82UniSTS
WI-20012  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371578,640,289 - 78,640,542UniSTSGRCh37
Build 361576,427,344 - 76,427,597RGDNCBI36
Celera1555,576,812 - 55,577,065RGD
Cytogenetic Map15q24UniSTS
HuRef1555,398,316 - 55,398,569UniSTS
GeneMap99-GB4 RH Map15271.82UniSTS
Whitehead-RH Map15296.9UniSTS
NCBI RH Map15513.2UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
835 2294 2144 1462 4823 1346 1771 6 285 929 137 2054 4586 4211 38 3697 1 720 1524 1373 156 1

Sequence


Ensembl Acc Id: ENST00000299529   ⟹   ENSP00000299529
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1578,340,353 - 78,348,225 (+)Ensembl
Ensembl Acc Id: ENST00000406419   ⟹   ENSP00000385978
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1578,340,476 - 78,348,078 (+)Ensembl
Ensembl Acc Id: ENST00000560753
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1578,347,821 - 78,348,221 (+)Ensembl
RefSeq Acc Id: NM_004378   ⟹   NP_004369
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381578,340,353 - 78,348,225 (+)NCBI
GRCh371578,632,666 - 78,640,572 (+)ENTREZGENE
Build 361576,419,750 - 76,427,622 (+)NCBI Archive
HuRef1555,390,694 - 55,398,599 (+)ENTREZGENE
CHM1_11578,750,642 - 78,758,548 (+)NCBI
T2T-CHM13v2.01576,202,952 - 76,210,824 (+)NCBI
Sequence:
RefSeq Acc Id: NP_004369   ⟸   NM_004378
- UniProtKB: Q6IAY7 (UniProtKB/Swiss-Prot),   Q8WTV5 (UniProtKB/Swiss-Prot),   P29762 (UniProtKB/Swiss-Prot),   F1T0F7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000299529   ⟸   ENST00000299529
Ensembl Acc Id: ENSP00000385978   ⟸   ENST00000406419
Protein Domains
Cytosolic fatty-acid binding proteins   Lipocalin/cytosolic fatty-acid binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P29762-F1-model_v2 AlphaFold P29762 1-137 view protein structure

Promoters
RGD ID:7230237
Promoter ID:EPDNEW_H20864
Type:initiation region
Name:CRABP1_1
Description:cellular retinoic acid binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20863  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381578,340,353 - 78,340,413EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:2338 AgrOrtholog
COSMIC CRABP1 COSMIC
Ensembl Genes ENSG00000166426 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000299529 ENTREZGENE
  ENST00000299529.7 UniProtKB/Swiss-Prot
  ENST00000406419.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000166426 GTEx
HGNC ID HGNC:2338 ENTREZGENE
Human Proteome Map CRABP1 Human Proteome Map
InterPro Calycin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ILBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:1381 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 1381 ENTREZGENE
OMIM 180230 OMIM
PANTHER PTHR11955 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11955:SF62 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26858 PharmGKB
PRINTS FATTYACIDBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FABP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B5MCB5_HUMAN UniProtKB/TrEMBL
  F1T0F7 ENTREZGENE, UniProtKB/TrEMBL
  P29762 ENTREZGENE
  Q6IAY7 ENTREZGENE
  Q8WTV5 ENTREZGENE
  RABP1_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q6IAY7 UniProtKB/Swiss-Prot
  Q8WTV5 UniProtKB/Swiss-Prot