Crabp1 (cellular retinoic acid binding protein 1) - Rat Genome Database

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Gene: Crabp1 (cellular retinoic acid binding protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Crabp1
Name: cellular retinoic acid binding protein 1
RGD ID: 12734650
Description: ENCODES a protein that exhibits retinoic acid binding (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; ASSOCIATED WITH Breast Cancer, Familial (ortholog); esophagus squamous cell carcinoma (ortholog); Keloid (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cellular retinoic acid-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mIctTri1.hap1 - mIctTri1.hap1 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap156,826,541 - 6,833,583 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_024408640118,817,578 - 118,824,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647136,662,647 - 36,672,606 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647136,665,641 - 36,672,626 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0



Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Crabp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap156,826,541 - 6,833,583 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_024408640118,817,578 - 118,824,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647136,662,647 - 36,672,606 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647136,665,641 - 36,672,626 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRABP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381578,340,353 - 78,348,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1578,340,260 - 78,348,250 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371578,632,695 - 78,640,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361576,419,750 - 76,427,622 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341576,419,749 - 76,427,622NCBI
Celera1555,569,189 - 55,577,095 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1555,390,694 - 55,398,599 (+)NCBIHuRef
CHM1_11578,750,642 - 78,758,548 (+)NCBICHM1_1
T2T-CHM13v2.01576,202,952 - 76,210,824 (+)NCBIT2T-CHM13v2.0
Crabp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39954,672,032 - 54,680,394 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl954,671,171 - 54,680,403 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38954,764,748 - 54,773,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl954,764,748 - 54,773,110 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37954,612,615 - 54,620,916 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36954,562,945 - 54,571,246 (+)NCBIMGSCv36mm8
Celera952,009,200 - 52,017,494 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.76NCBI
Crabp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,047,431 - 64,055,469 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl864,047,060 - 64,055,470 (+)EnsemblGRCr8
mRatBN7.2855,138,363 - 55,159,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,151,285 - 55,159,360 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx860,684,984 - 60,693,017 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0858,963,976 - 58,972,009 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0856,828,222 - 56,836,255 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd864,856,800 - 64,864,854 (+)NCBI
Lyon_Normotensive867,049,362 - 67,057,416 (+)NCBI
Lyon_Hypertensive865,488,373 - 65,496,411 (+)NCBI
F344_StmMcwi856,936,497 - 56,944,529 (+)NCBI
Rnor_6.0859,344,097 - 59,352,135 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl859,344,083 - 59,352,132 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.0857,926,233 - 57,934,271 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4858,317,337 - 58,325,375 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera854,638,866 - 54,646,904 (+)NCBICelera
Cytogenetic Map8q24NCBI
Crabp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955450810,151 - 817,059 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_004955450810,206 - 817,011 (+)NCBIChiLan1.0ChiLan1.0
CRABP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21667,554,060 - 67,561,964 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11571,719,914 - 71,727,813 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01557,269,794 - 57,277,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11576,234,401 - 76,242,311 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1576,234,401 - 76,242,311 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
CRABP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1358,446,222 - 58,449,789 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha361,134,622 - 61,140,866 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0358,911,175 - 58,917,395 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl358,910,813 - 58,917,389 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1358,407,571 - 58,413,815 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0358,615,324 - 58,621,565 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,964,662 - 58,970,906 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CRABP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl747,602,192 - 47,608,970 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1747,602,316 - 47,608,865 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2753,156,458 - 53,163,020 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRABP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap12654,441,137 - 54,449,618 (+)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_023666048136,799,993 - 136,808,476 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1264,987,927 - 4,996,431 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl264,987,882 - 4,996,343 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Crabp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248942,538,708 - 2,545,625 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046248942,538,230 - 2,545,698 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Crabp1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1848,833,872 - 48,842,073 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000007798   ⟹   ENSSTOP00000006983
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647136,662,647 - 36,672,606 (-)Ensembl
RefSeq Acc Id: XM_005316853   ⟹   XP_005316910
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
mIctTri1.hap156,826,541 - 6,833,583 (+)NCBI
HiC_Itri_2NW_024408640118,817,578 - 118,824,568 (-)NCBI
SpeTri2.0NW_00493647136,665,641 - 36,672,626 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005316910 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006983.2
  ENSSTOP00015015224
GenBank Protein KAG3262382 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005316910   ⟸   XM_005316853
- UniProtKB: I3MAG1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000006983   ⟸   ENSSTOT00000007798
Protein Domains
Cytosolic fatty-acid binding proteins


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007805 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00015012458 ENTREZGENE
Ensembl Transcript ENSSTOT00000007798.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/TrEMBL
  ILBP UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/TrEMBL
KEGG Report iti:101959185 UniProtKB/TrEMBL
NCBI Gene Crabp1 ENTREZGENE
PANTHER PTHR11955 UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/TrEMBL
PRINTS FATTYACIDBP UniProtKB/TrEMBL
PROSITE FABP UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt I3MAG1 ENTREZGENE, UniProtKB/TrEMBL