Crabp1 (cellular retinoic acid binding protein 1) - Rat Genome Database

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Gene: Crabp1 (cellular retinoic acid binding protein 1) Heterocephalus glaber
Analyze
Symbol: Crabp1
Name: cellular retinoic acid binding protein 1
RGD ID: 18915952
Description: ENCODES a protein that exhibits retinoic acid binding (ortholog); INVOLVED IN fatty acid transport (inferred); PARTICIPATES IN retinoic acid metabolic pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Cellular retinoic acid-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248942,538,230 - 2,545,698 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248942,538,708 - 2,545,625 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Crabp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248942,538,230 - 2,545,698 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248942,538,708 - 2,545,625 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CRABP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381578,340,353 - 78,348,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1578,340,353 - 78,348,225 (+)EnsemblGRCh38hg38GRCh38
GRCh371578,632,695 - 78,640,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361576,419,750 - 76,427,622 (+)NCBINCBI36Build 36hg18NCBI36
Build 341576,419,749 - 76,427,622NCBI
Celera1555,569,189 - 55,577,095 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1555,390,694 - 55,398,599 (+)NCBIHuRef
CHM1_11578,750,642 - 78,758,548 (+)NCBICHM1_1
T2T-CHM13v2.01576,202,952 - 76,210,824 (+)NCBIT2T-CHM13v2.0
Crabp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39954,672,032 - 54,680,394 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl954,672,032 - 54,680,394 (+)EnsemblGRCm39 Ensembl
GRCm38954,764,748 - 54,773,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl954,764,748 - 54,773,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv37954,612,615 - 54,620,916 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36954,562,945 - 54,571,246 (+)NCBIMGSCv36mm8
Celera952,009,200 - 52,017,494 (+)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.76NCBI
Crabp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,047,431 - 64,055,469 (+)NCBIGRCr8
mRatBN7.2855,138,363 - 55,159,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,151,285 - 55,159,360 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx860,684,984 - 60,693,017 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0858,963,976 - 58,972,009 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0856,828,222 - 56,836,255 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0859,344,097 - 59,352,135 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl859,344,083 - 59,352,132 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0857,926,233 - 57,934,271 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4858,317,337 - 58,325,375 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera854,638,866 - 54,646,904 (+)NCBICelera
Cytogenetic Map8q24NCBI
Crabp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955450810,151 - 817,059 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955450810,206 - 817,011 (+)NCBIChiLan1.0ChiLan1.0
CRABP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21667,554,060 - 67,561,964 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11571,719,914 - 71,727,813 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01557,269,794 - 57,277,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11576,234,401 - 76,242,311 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1576,234,401 - 76,242,311 (+)Ensemblpanpan1.1panPan2
CRABP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1358,446,222 - 58,449,789 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha361,134,622 - 61,140,866 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0358,911,175 - 58,917,395 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1358,407,571 - 58,413,815 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0358,615,324 - 58,621,565 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0358,964,662 - 58,970,906 (+)NCBIUU_Cfam_GSD_1.0
Crabp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640118,817,578 - 118,824,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647136,662,647 - 36,672,606 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647136,665,641 - 36,672,626 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRABP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl747,602,192 - 47,608,970 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1747,602,316 - 47,608,865 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2753,156,458 - 53,163,020 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRABP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1264,987,927 - 4,996,431 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl264,987,882 - 4,996,343 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048136,799,993 - 136,808,476 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000001256   ⟹   ENSHGLP00000001214
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248942,538,230 - 2,545,698 (-)Ensembl
RefSeq Acc Id: XM_004872098   ⟹   XP_004872155
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248942,538,708 - 2,545,625 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004872155 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00717 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000001214
  ENSHGLP00100042115
GenBank Protein JAN96556 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004872155   ⟸   XM_004872098
- UniProtKB: G5AUK6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000001214   ⟸   ENSHGLT00000001256


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000944 Ensembl, ENTREZGENE
  ENSHGLG00100009658 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000001256 ENTREZGENE
  ENSHGLT00100063334 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
  Fatty_acid-bd UniProtKB/TrEMBL
  ILBP UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/TrEMBL
KEGG Report hgl:101703381 UniProtKB/TrEMBL
NCBI Gene Crabp1 ENTREZGENE
PANTHER PTHR11955 UniProtKB/TrEMBL
  PTHR11955:SF62 UniProtKB/TrEMBL
Pfam Lipocalin UniProtKB/TrEMBL
PRINTS FATTYACIDBP UniProtKB/TrEMBL
PROSITE FABP UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt G5AUK6 ENTREZGENE, UniProtKB/TrEMBL