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Gene: Zpr1 (ZPR1 zinc finger) Rattus norvegicus

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Symbol:

Zpr1

Name:

ZPR1 zinc finger

RGD ID:

1562173

Description:

Predicted to enable receptor tyrosine kinase binding activity; translation initiation factor binding activity; and zinc ion binding activity. Predicted to be involved in several processes, including Cajal body organization; blastocyst growth; and nervous system development. Predicted to act upstream of or within with a positive effect on DNA replication. Predicted to be located in growth cone; nuclear lumen; and perikaryon. Predicted to be active in Cajal body; axon; and cytoplasm. Orthologous to human ZPR1 (ZPR1 zinc finger); INTERACTS WITH bisphenol A; dibutyl phthalate; fenvalerate.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC500989; RGD1562173; similar to zinc finger protein; Zfp259; zinc finger protein 259; zinc finger protein ZPR1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZPR1 (ZPR1 zinc finger)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zpr1 (ZPR1 zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zpr1 (ZPR1 zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZPR1 (ZPR1 zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZPR1 (ZPR1 zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zpr1 (ZPR1 zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZPR1 (ZPR1 zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZPR1 (ZPR1 zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zpr1 (ZPR1 zinc finger)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZPR1 (ZPR1 zinc finger)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zpr1 (ZPR1 zinc finger)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zpr1 (ZPR1 zinc finger)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	W03F9.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ZPR1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Zpr1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zpr1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	55,461,839 - 55,471,413 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	55,461,839 - 55,471,413 (+)	Ensembl				GRCr8
mRatBN7.2	8	46,564,898 - 46,574,719 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	46,565,146 - 46,574,719 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	52,066,497 - 52,076,063 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	50,345,269 - 50,354,835 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	48,209,543 - 48,219,109 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	50,563,047 - 50,572,621 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	50,563,047 - 50,572,621 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	49,189,009 - 49,198,583 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	49,257,107 - 49,266,681 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	46,146,914 - 46,156,613 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 11 partial duplication syndrome (ISO)

Dwarfism (ISO)

GROWTH RESTRICTION, HYPOPLASTIC KIDNEYS, ALOPECIA, AND DISTINCTIVE FACIES (ISO)

HYPERTRIGLYCERIDEMIA 1 (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

ciguatoxin CTX1B (ISO)

cobalt dichloride (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

fenvalerate (EXP)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

furan (EXP,ISO)

gentamycin (EXP)

hexane (EXP)

indometacin (ISO)

inulin (ISO)

ivermectin (ISO)

methidathion (ISO)

nefazodone (EXP)

nickel atom (ISO)

nimesulide (EXP)

nitrates (ISO)

Nutlin-3 (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

resveratrol (ISO)

rotenone (EXP,ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

triphenyl phosphate (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process involved in development (IEA,ISO)

axon development (IBA,IEA,ISO)

Cajal body organization (IBA,IEA,ISO)

cell differentiation (IEA)

cellular response to epidermal growth factor stimulus (IEA,ISO)

DNA endoreduplication (IEA,ISO)

DNA replication (IEA,ISO)

inner cell mass cell proliferation (IEA,ISO)

microtubule cytoskeleton organization (IEA,ISO)

mRNA processing (IEA)

negative regulation of motor neuron apoptotic process (IEA,ISO)

positive regulation of cell cycle (IEA,ISO)

positive regulation of gene expression (IBA,IEA,ISO)

positive regulation of growth (IEA,ISO)

positive regulation of protein import into nucleus (IBA,IEA,ISO)

positive regulation of RNA splicing (IEA,ISO)

pre-mRNA catabolic process (IEA,ISO)

regulation of myelination (IEA,ISO)

RNA splicing (IEA)

spinal cord development (IEA,ISO)

trophectodermal cell proliferation (IEA,ISO)

Cellular Component

axon (IBA,IEA,ISO)

Cajal body (IBA,IEA,ISO)

cell projection (IEA)

cytoplasm (IBA,IEA,ISO)

Gemini of Cajal bodies (IEA,ISO)

growth cone (IEA,ISO)

neuronal cell body (IEA,ISO)

nucleolus (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

perikaryon (IEA,ISO)

perinuclear region of cytoplasm (IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

receptor tyrosine kinase binding (IEA,ISO)

translation initiation factor binding (IBA,IEA,ISO)

zinc ion binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8650580	PMID:9763455	PMID:9852145	PMID:11283611	PMID:15767679	PMID:16648254	PMID:17068332	PMID:22422766

Genomics

Comparative Map Data

Zpr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	55,461,839 - 55,471,413 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	55,461,839 - 55,471,413 (+)	Ensembl				GRCr8
mRatBN7.2	8	46,564,898 - 46,574,719 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	46,565,146 - 46,574,719 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	52,066,497 - 52,076,063 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	50,345,269 - 50,354,835 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	48,209,543 - 48,219,109 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	50,563,047 - 50,572,621 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	50,563,047 - 50,572,621 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	49,189,009 - 49,198,583 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	49,257,107 - 49,266,681 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	46,146,914 - 46,156,613 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

ZPR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	116,773,799 - 116,788,023 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	116,773,799 - 116,788,039 (-)	Ensembl			hg38	GRCh38
GRCh37	11	116,644,515 - 116,658,739 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	116,154,486 - 116,163,949 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	116,154,486 - 116,163,949	NCBI
Celera	11	113,804,668 - 113,814,129 (-)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	112,581,245 - 112,590,732 (-)	NCBI		HuRef
CHM1_1	11	116,533,917 - 116,543,379 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	116,788,425 - 116,802,647 (-)	NCBI		T2T-CHM13v2.0

Zpr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	46,184,362 - 46,193,941 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	46,184,362 - 46,193,941 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	46,273,064 - 46,282,643 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	46,273,064 - 46,282,643 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	46,081,147 - 46,090,726 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	46,024,161 - 46,032,597 (+)	NCBI		MGSCv36	mm8
Celera	9	43,562,072 - 43,571,685 (+)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI
cM Map	9	25.38	NCBI

Zpr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	18,116,531 - 18,127,552 (-)	Ensembl
ChiLan1.0	NW_004955412	18,117,957 - 18,127,552 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZPR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	117,479,213 - 117,489,052 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	118,584,442 - 118,594,266 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	111,613,940 - 111,623,539 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	115,547,951 - 115,557,883 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	115,547,973 - 115,557,883 (-)	Ensembl			panPan2	panpan1.1

ZPR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	16,778,803 - 16,787,493 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	16,778,832 - 16,787,105 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	16,830,973 - 16,839,827 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	16,725,521 - 16,734,375 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	16,725,519 - 16,734,197 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	16,862,383 - 16,871,236 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	16,764,960 - 16,773,814 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	16,808,093 - 16,816,950 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zpr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	99,136,639 - 99,146,064 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	2,056,905 - 2,067,542 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	2,058,048 - 2,067,468 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZPR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	44,167,423 - 44,177,435 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	44,167,422 - 44,178,137 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	49,241,411 - 49,250,617 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZPR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	108,144,247 - 108,153,533 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	108,144,609 - 108,153,480 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	17,895,518 - 17,904,802 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zpr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	12,202,519 - 12,213,120 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624784	12,202,519 - 12,212,257 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Zpr1
40 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	168
Count of miRNA genes:	113
Interacting mature miRNAs:	137
Transcripts:	ENSRNOT00000025149
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	30848154	61290444	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	58482492	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	26644912	46711092	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	28242912	53961020	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
5684993	Bmd84	Bone mineral density QTL 84	4.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	8	42692684	50095447	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	29502665	50095447	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	27205715	54998217	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	46531722	99083736	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat

Markers in Region

D8Got344

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	46,564,061 - 46,564,213 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	50,561,961 - 50,562,114	NCBI	Rnor6.0
Rnor_5.0	8	49,187,923 - 49,188,076	UniSTS	Rnor5.0
RGSC_v3.4	8	49,256,021 - 49,256,174	UniSTS	RGSC3.4
Celera	8	46,145,828 - 46,145,981	UniSTS
Cytogenetic Map	8	q23	UniSTS

BE102182

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	46,570,172 - 46,570,328 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	50,568,074 - 50,568,229	NCBI	Rnor6.0
Rnor_5.0	8	49,194,036 - 49,194,191	UniSTS	Rnor5.0
RGSC_v3.4	8	49,262,134 - 49,262,289	UniSTS	RGSC3.4
Celera	8	46,152,066 - 46,152,221	UniSTS
RH 3.4 Map	8	470.4	UniSTS
Cytogenetic Map	8	q23	UniSTS

RH139127

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	46,563,175 - 46,563,302 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	50,561,075 - 50,561,201	NCBI	Rnor6.0
Rnor_5.0	8	49,187,037 - 49,187,163	UniSTS	Rnor5.0
RGSC_v3.4	8	49,255,135 - 49,255,261	UniSTS	RGSC3.4
Celera	8	46,144,942 - 46,145,068	UniSTS
RH 3.4 Map	8	478.2	UniSTS
Cytogenetic Map	8	q23	UniSTS

RH139835

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	46,573,269 - 46,573,467 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	50,571,172 - 50,571,369	NCBI	Rnor6.0
Rnor_5.0	8	49,197,134 - 49,197,331	UniSTS	Rnor5.0
RGSC_v3.4	8	49,265,232 - 49,265,429	UniSTS	RGSC3.4
Celera	8	46,155,164 - 46,155,361	UniSTS
RH 3.4 Map	8	474.3	UniSTS
Cytogenetic Map	8	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001137646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025149 ⟹ ENSRNOP00000025149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	55,461,839 - 55,471,413 (+)	Ensembl
mRatBN7.2 Ensembl	8	46,565,146 - 46,574,719 (+)	Ensembl
Rnor_6.0 Ensembl	8	50,563,047 - 50,572,621 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112149 ⟹ ENSRNOP00000097256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	55,461,839 - 55,471,413 (+)	Ensembl
mRatBN7.2 Ensembl	8	46,565,166 - 46,573,653 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112963 ⟹ ENSRNOP00000097173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	55,461,839 - 55,471,413 (+)	Ensembl
mRatBN7.2 Ensembl	8	46,565,146 - 46,574,719 (+)	Ensembl

RefSeq Acc Id:

NM_001137646 ⟹ NP_001131118

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	55,461,839 - 55,471,413 (+)	NCBI
mRatBN7.2	8	46,565,146 - 46,574,719 (+)	NCBI
Rnor_6.0	8	50,563,047 - 50,572,621 (+)	NCBI
Rnor_5.0	8	49,189,009 - 49,198,583 (+)	NCBI
RGSC_v3.4	8	49,257,107 - 49,266,681 (+)	RGD
Celera	8	46,146,914 - 46,156,613 (+)	RGD

Sequence:

show sequence

CCGGAAGCTTTCACTCGAGTAGCGCGTGGGGTAATGTCGGCCAGCGGGGCTGTGCAGCCCGGAC
CTCCGGGGGCTGCCGTCGGCCCCTCGCCCACCGCGGCTGCGTTATCAGACACCGGACCTTTGTT
CCGGCCCCTCAGCGCCGAGGATGAGGAGCAGCAGCCCACTGAGATCGAGTCACTGTGCATGAAC
TGTTACCGGAACGGCACGACGCGACTTCTGCTCACTAAGATCCCCTTCTTTAGAGAAATAATCG
TGAGCTCCTTTTCCTGTGAGCACTGTGGCTGGAACAACACCGAGATCCAGTCAGCAGGAAGGAT
CCAGGACCAAGGAGTGCGCTACACCTTGACCGTTAAGGGCCAAGAGGACATGAACAGAGAAGTG
GTGAAGACAGACTCAGCCACCACAAGGATCCCCGAGCTGGATTTTGAAATTCCAGCTTTCAGCC
AGAAGGGAGCTCTGACCACTGTGGAAGGACTCATAAGCCGCGCAATCTTGGGCCTGGAACAGGA
CCAGCCGACACGACGGGCAATGGAAGGTGCTATAGCCGAAAGAATTGATGAGTTCATTGGCAAA
CTGAAGGACCTAAAGCAAATGGCTTCCCCGTTCACGCTGATCATTGATGATCCCTCGGGAAACA
GCTTTGTAGAAAACCCACACGCTCCTCAAAAAGATAGCGCCTTGGTGATCACATACTACGACCG
GACCCCACAGCAAGCTGAGATGCTGGGGCTCCAAGCAGAAGCACCAGAAGAGAAGTCGGAAGAG
GAAGACCTTAGAAACGAAGTGCTCCAGTTCAACACAAACTGCCCAGAGTGCAACGCCCCCGCTC
AGACCAACATGAAGCTTGTCCAAATCCCCCACTTTAAAGAGGTTATCATCATGGCCACCAACTG
TGAGAGGTGTGGGCATCGGACTAATGAGGTGAAGTCTGGAGGAGCTGTAGAACCTTTGGGTACC
AGGATTACCCTCCACATCACAGATCCCTCAGACATGACCAGAGACCTCCTCAAGTCTGAGACCT
GTAGTGTAGAAATCCCAGAGCTCGAGTTTGAACTGGGAATGGCTGTACTTGGGGGCAAGTTCAC
CACTCTCGAAGGACTGCTGAAAGACATCCGAGAATTGGTAACCAAAAACCCATTCACGCTGGGC
GACAGCTCCAATCCTGACCAGTCAGAGAAACTGCAGGAGTTTAGCCAGAAGTTGGGCCAGATCA
TCGAGGGCAAGATGAAAGCCCACTTTATCATGAATGATCCAGCAGGAAACAGTTACCTGCAGAA
CGTGTATGCACCTGAAGATGACCCGGAGATGAAGGTAGAGCGGTACAAGCGCTCCTTTGACCAA
AATGAGGAGCTCGGCCTCAATGACATGAAGACAGAGGGCTATGAGGCAGACCTGGCCCCACAGC
GGTAGCAGTGGGCAGCCCACAGGCCAGCTGCAGGGCACTCACACTGCAGGGTTCTTTGTTACTG
TTGGAGAAGGCTGAGTGTTCAAGCCCTCCTCCGTGGTGAGGAGGAAACCACCTGAGTTAGAAAT
CTAAGCACACGAGGTTAGCAGCTGACAATGATGCGGCTGCAGGCCTACTGTGCTTCTTGACCTT
CCTTTGGCGGTTTTAAGTCAGTGTGAGAAGAACGCCACAAACACCATGCGTCTGCCATCACCTT
TTGTCTGTCAGCTCTCTGGCCTCCAGTGCTGGACCTTTGAAGTCTGAAGTGTGGAGAAGCGAAA
TACAAGTTGCAGCTGGCTTTGGGCTTATGCAGTGCTAACTTTCAGCATAGAAGAATGACTGAGG
GCAGGCACAGGTAAAGGAGCTTACATTAAAGTGATGGCTTTTAAACAACACCTGCCTCGGCATT
TGTGTCCTTCCTGAATACCATGGTGTTAGAGCCCAGCTGCCTAAGTTGGGTCACACTGAGTCAC
ACACACCTGCAGTCCCAGCATGGAGGATAGCTTGAGCCATAGTGAGATTCTGTCTAAATGAAAA
GAAAATAGGAAAAAAAATTAGTTTCCCAAACAAATCTTCAGGTGGCTGCTGTCACTGGGCTGTC
AGAGGCAGCATTTCAGTTACTCCAACAGACCATCGTGCCTGCTCTGAGCCCGGCACACGTGTGG
AGTCCAGCTGTTCTCATGCATCTTAAAGTAGTCTGGAAAGCAGGGTGGCACATACCTTAATCCC
AGCAGAAGCAGGCGGGTCTTTGGGCCAATCTGGTCTACAGAGCAAGTTCCAGGACAGCCTGGGC
TACGTGGAGAAACCCTGTTTTGAGACAAAACAAATCAGACTGGATAACCTGCAGCACCCGTGGT
TGGCCCCTGCTAGCAAAAACCAGAGCCGGGCAGTATGAAGATGTATGGGTTCCTGTACTTAAAC
AAACTTAGCATCTATGAAGGAGGCTAATAAAACTGATGGCCATGTCATGGTTTATACATAGTCC
TGCTACTTGGGAAACTGGGGAAGAAGGGAAACAAATTTAGGGGCAGCCTGGGCAATTTAATTTA
GTAAGGTGTTCAACATTCAAAAAGGGGTGGGGATGAATTTATCCTATAGAACTCTTGCCTACCA
TGTGTGAAAGGGCTTGGGTTTAATCCTCAGCACCAGATGAAGAAAAAACAGTTGTGAGCGTTAA
GTGAGTCACAAACACTTAAGTCTATAGAAGAAAGGCTAGAATCTTCCTAGCTTTCTTTTCTTTG
TCGCTGAATCCATGTCGTCTTCACTGGGAAGATTCCACATCATTTTCTTGAGAGACAATACCAA
AGGTGAGAAGGTCAGTACAGGTTTGATAAAAACCTATCAAATTTTCATAGTCACAATACTAGGG
ATGGAGTTTGACTTCCCCTAAGTGGTACCTGGAAGCCTGTTCCAGACTTCCCACCAAAGGTATT
TATACCATTAAAAGTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001131118	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95399	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025149
	ENSRNOP00000025149.4
	ENSRNOP00000097173.1
	ENSRNOP00000097256.1

RefSeq Acc Id:

NP_001131118 ⟸ NM_001137646

- UniProtKB:

D3ZWN1 (UniProtKB/TrEMBL), A6J476 (UniProtKB/TrEMBL), A0A8I6AUQ7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSASGAVQPGPPGAAVGPSPTAAALSDTGPLFRPLSAEDEEQQPTEIESLCMNCYRNGTTRLLL
TKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVKGQEDMNREVVKTDSATTRIP
ELDFEIPAFSQKGALTTVEGLISRAILGLEQDQPTRRAMEGAIAERIDEFIGKLKDLKQMASPF
TLIIDDPSGNSFVENPHAPQKDSALVITYYDRTPQQAEMLGLQAEAPEEKSEEEDLRNEVLQFN
TNCPECNAPAQTNMKLVQIPHFKEVIIMATNCERCGHRTNEVKSGGAVEPLGTRITLHITDPSD
MTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKDIRELVTKNPFTLGDSSNPDQSEKL
QEFSQKLGQIIEGKMKAHFIMNDPAGNSYLQNVYAPEDDPEMKVERYKRSFDQNEELGLNDMKT
EGYEADLAPQR

hide sequence

Ensembl Acc Id:

ENSRNOP00000025149 ⟸ ENSRNOT00000025149

Ensembl Acc Id:

ENSRNOP00000097256 ⟸ ENSRNOT00000112149

Ensembl Acc Id:

ENSRNOP00000097173 ⟸ ENSRNOT00000112963

Protein Domains

Zinc finger ZPR1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZWN1-F1-model_v2	AlphaFold	D3ZWN1	1-459	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695931

Promoter ID:

EPDNEW_R6456

Type:

multiple initiation site

Name:

Zpr1_1

Description:

ZPR1 zinc finger

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	50,563,059 - 50,563,119	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562173	AgrOrtholog
BioCyc Gene	G2FUF-30648	BioCyc
Ensembl Genes	ENSRNOG00000018481	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025149	ENTREZGENE
	ENSRNOT00000025149.6	UniProtKB/TrEMBL
	ENSRNOT00000112149.1	UniProtKB/TrEMBL
	ENSRNOT00000112963.1	UniProtKB/TrEMBL
Gene3D-CATH	2.20.25.420	UniProtKB/TrEMBL
	2.60.120.1040	UniProtKB/TrEMBL
InterPro	Znf_ZPR1	UniProtKB/TrEMBL
	ZPR1	UniProtKB/TrEMBL
	ZPR1_A/B_dom	UniProtKB/TrEMBL
	ZPR1_jr_dom	UniProtKB/TrEMBL
	ZPR1_ZnF1/2	UniProtKB/TrEMBL
KEGG Report	rno:500989	UniProtKB/TrEMBL
NCBI Gene	500989	ENTREZGENE
PANTHER	PTHR10876	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN ZPR1	UniProtKB/TrEMBL
Pfam	jr-ZPR1	UniProtKB/TrEMBL
	zf-ZPR1	UniProtKB/TrEMBL
PhenoGen	Zpr1	PhenoGen
RatGTEx	ENSRNOG00000018481	RatGTEx
SMART	Zpr1	UniProtKB/TrEMBL
UniProt	A0A8I6AUQ7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GME8_RAT	UniProtKB/TrEMBL
	A6J476	ENTREZGENE, UniProtKB/TrEMBL
	D3ZWN1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-06-28	Zpr1	ZPR1 zinc finger	Zfp259	zinc finger protein 259	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-29	Zfp259	zinc finger protein 259	RGD1562173_predicted	similar to zinc finger protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562173_predicted	similar to zinc finger protein (predicted)	LOC500989	similar to zinc finger protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500989	similar to zinc finger protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM