Symbol:
Snapc5
Name:
small nuclear RNA activating complex, polypeptide 5
RGD ID:
1582813
Description:
Predicted to enable RNA polymerase II general transcription initiation factor activity and RNA polymerase III general transcription initiation factor activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be located in nuclear body and nucleolus. Orthologous to human SNAPC5 (small nuclear RNA activating complex polypeptide 5); PARTICIPATES IN RNA polymerase III transcription pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type:
protein-coding (Ensembl: lncRNA)
RefSeq Status:
VALIDATED
Previously known as:
LOC691501; similar to small nuclear RNA activating complex, polypeptide 5; snRNA-activating protein complex subunit 5
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
SNAPC5 (small nuclear RNA activating complex polypeptide 5)
HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
Snapc5 (small nuclear RNA activating complex, polypeptide 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Snapc5 (small nuclear RNA activating complex polypeptide 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
SNAPC5 (small nuclear RNA activating complex polypeptide 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
SNAPC5 (small nuclear RNA activating complex polypeptide 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Snapc5 (small nuclear RNA activating complex polypeptide 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
SNAPC5 (small nuclear RNA activating complex polypeptide 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
SNAPC5 (small nuclear RNA activating complex polypeptide 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Snapc5 (small nuclear RNA activating complex polypeptide 5)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
TERT (telomerase reverse transcriptase)
HGNC
OMA
Alliance orthologs 3
Homo sapiens (human):
SNAPC5 (small nuclear RNA activating complex polypeptide 5)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Snapc5 (small nuclear RNA activating complex, polypeptide 5)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
snapc5 (small nuclear RNA activating complex, polypeptide 5)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
snapc5
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 8 73,572,503 - 73,576,068 (+) NCBI GRCr8 mRatBN7.2 8 64,677,204 - 64,680,769 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 8 64,677,205 - 64,681,964 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 8 70,192,038 - 70,195,602 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 8 68,464,629 - 68,468,193 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 8 66,334,616 - 66,338,180 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 8 69,127,708 - 69,131,539 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 8 69,127,708 - 69,131,539 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 8 68,833,944 - 68,837,775 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 8 68,372,827 - 68,375,880 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 8 64,083,944 - 64,087,509 (+) NCBI Celera Cytogenetic Map 8 q24 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Snapc5 Rat 1,2-dimethylhydrazine multiple interactions ISO Snapc5 (Mus musculus) 6480464 [1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SNAPC5 mRNA CTD PMID:22206623 Snapc5 Rat 1,2-dimethylhydrazine decreases expression ISO Snapc5 (Mus musculus) 6480464 1 and 2-Dimethylhydrazine results in decreased expression of SNAPC5 mRNA CTD PMID:22206623 Snapc5 Rat 17beta-estradiol increases expression ISO Snapc5 (Mus musculus) 6480464 Estradiol results in increased expression of SNAPC5 mRNA CTD PMID:39298647 Snapc5 Rat 2,2',4,4'-Tetrabromodiphenyl ether affects expression ISO Snapc5 (Mus musculus) 6480464 2 more ... CTD PMID:30294300 Snapc5 Rat 2,3',4,4',5-Pentachlorobiphenyl increases expression ISO Snapc5 (Mus musculus) 6480464 2 more ... CTD PMID:31388691 Snapc5 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression EXP 6480464 Tetrachlorodibenzodioxin affects the expression of SNAPC5 mRNA CTD PMID:22298810 Snapc5 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression EXP 6480464 Tetrachlorodibenzodioxin results in decreased expression of SNAPC5 mRNA CTD PMID:33387578 Snapc5 Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO Snapc5 (Mus musculus) 6480464 Tetrachlorodibenzodioxin affects the expression of SNAPC5 mRNA CTD PMID:21570461 and PMID:24680724 Snapc5 Rat 3-isobutyl-1-methyl-7H-xanthine multiple interactions ISO SNAPC5 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of SNAPC5 mRNA CTD PMID:28628672 Snapc5 Rat 4,4'-diaminodiphenylmethane affects expression ISO Snapc5 (Mus musculus) 6480464 4 and 4'-diaminodiphenylmethane affects the expression of SNAPC5 mRNA CTD PMID:18648102 Snapc5 Rat 4,4'-sulfonyldiphenol multiple interactions ISO SNAPC5 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of SNAPC5 mRNA CTD PMID:28628672 Snapc5 Rat 4,4'-sulfonyldiphenol increases expression ISO Snapc5 (Mus musculus) 6480464 bisphenol S results in increased expression of SNAPC5 mRNA CTD PMID:39298647 Snapc5 Rat 4-hydroxynon-2-enal increases expression ISO Snapc5 (Mus musculus) 6480464 4-hydroxy-2-nonenal results in increased expression of SNAPC5 mRNA CTD PMID:19191707 Snapc5 Rat 6-propyl-2-thiouracil decreases expression EXP 6480464 Propylthiouracil results in decreased expression of SNAPC5 mRNA CTD PMID:24780913 Snapc5 Rat acrylamide increases expression EXP 6480464 Acrylamide results in increased expression of SNAPC5 mRNA CTD PMID:28959563 Snapc5 Rat aristolochic acid A decreases expression ISO SNAPC5 (Homo sapiens) 6480464 aristolochic acid I results in decreased expression of SNAPC5 mRNA CTD PMID:33212167 Snapc5 Rat arsenous acid decreases expression ISO SNAPC5 (Homo sapiens) 6480464 Arsenic Trioxide results in decreased expression of SNAPC5 mRNA CTD PMID:20458559 Snapc5 Rat bisphenol A increases expression ISO Snapc5 (Mus musculus) 6480464 bisphenol A results in increased expression of SNAPC5 mRNA CTD PMID:26063408 Snapc5 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of SNAPC5 mRNA CTD PMID:31129395 Snapc5 Rat bisphenol A affects methylation ISO Snapc5 (Mus musculus) 6480464 bisphenol A affects the methylation of SNAPC5 promoter CTD PMID:27334623 Snapc5 Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of SNAPC5 mRNA CTD PMID:25181051 Snapc5 Rat butanal decreases expression ISO SNAPC5 (Homo sapiens) 6480464 butyraldehyde results in decreased expression of SNAPC5 mRNA CTD PMID:26079696 Snapc5 Rat cadmium dichloride increases expression ISO SNAPC5 (Homo sapiens) 6480464 Cadmium Chloride results in increased expression of SNAPC5 mRNA CTD PMID:26472689 Snapc5 Rat copper(II) sulfate decreases expression ISO SNAPC5 (Homo sapiens) 6480464 Copper Sulfate results in decreased expression of SNAPC5 mRNA CTD PMID:19549813 Snapc5 Rat dexamethasone multiple interactions ISO SNAPC5 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of SNAPC5 mRNA CTD PMID:28628672 Snapc5 Rat diarsenic trioxide decreases expression ISO SNAPC5 (Homo sapiens) 6480464 Arsenic Trioxide results in decreased expression of SNAPC5 mRNA CTD PMID:20458559 Snapc5 Rat Dibutyl phosphate affects expression ISO SNAPC5 (Homo sapiens) 6480464 di-n-butylphosphoric acid affects the expression of SNAPC5 mRNA CTD PMID:37042841 Snapc5 Rat endosulfan decreases expression EXP 6480464 Endosulfan results in decreased expression of SNAPC5 mRNA CTD PMID:29391264 Snapc5 Rat folic acid multiple interactions ISO Snapc5 (Mus musculus) 6480464 [1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SNAPC5 mRNA CTD PMID:22206623 Snapc5 Rat gentamycin decreases expression EXP 6480464 Gentamicins results in decreased expression of SNAPC5 mRNA CTD PMID:33387578 Snapc5 Rat indometacin multiple interactions ISO SNAPC5 (Homo sapiens) 6480464 [INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of SNAPC5 mRNA CTD PMID:28628672 Snapc5 Rat nitrates multiple interactions ISO Snapc5 (Mus musculus) 6480464 [Particulate Matter results in increased abundance of Nitrates] which results in increased expression of SNAPC5 mRNA CTD PMID:35964746 Snapc5 Rat ozone multiple interactions ISO SNAPC5 (Homo sapiens) 6480464 [Air Pollutants results in increased abundance of Ozone] which affects the expression of SNAPC5 mRNA CTD PMID:35430440 Snapc5 Rat paracetamol affects expression ISO Snapc5 (Mus musculus) 6480464 Acetaminophen affects the expression of SNAPC5 mRNA CTD PMID:17562736 Snapc5 Rat pentanal decreases expression ISO SNAPC5 (Homo sapiens) 6480464 pentanal results in decreased expression of SNAPC5 mRNA CTD PMID:26079696 Snapc5 Rat resveratrol multiple interactions ISO SNAPC5 (Homo sapiens) 6480464 [Plant Extracts co-treated with Resveratrol] results in increased expression of SNAPC5 mRNA CTD PMID:23557933 Snapc5 Rat silicon dioxide decreases methylation ISO SNAPC5 (Homo sapiens) 6480464 Silicon Dioxide results in decreased methylation of SNAPC5 gene CTD PMID:34973136 Snapc5 Rat sodium arsenite increases expression ISO SNAPC5 (Homo sapiens) 6480464 sodium arsenite results in increased expression of SNAPC5 mRNA CTD PMID:17879257 Snapc5 Rat Soman decreases expression EXP 6480464 Soman results in decreased expression of SNAPC5 mRNA CTD PMID:19281266 Snapc5 Rat sunitinib increases expression ISO SNAPC5 (Homo sapiens) 6480464 Sunitinib results in increased expression of SNAPC5 mRNA CTD PMID:31533062 Snapc5 Rat taurine increases expression ISO SNAPC5 (Homo sapiens) 6480464 Taurine results in increased expression of SNAPC5 mRNA CTD PMID:16579726 Snapc5 Rat thioacetamide increases methylation EXP 6480464 Thioacetamide results in increased methylation of SNAPC5 promoter CTD PMID:27914986 Snapc5 Rat titanium dioxide decreases expression ISO Snapc5 (Mus musculus) 6480464 titanium dioxide results in decreased expression of SNAPC5 mRNA CTD PMID:23557971 Snapc5 Rat titanium dioxide decreases methylation ISO Snapc5 (Mus musculus) 6480464 titanium dioxide results in decreased methylation of SNAPC5 gene CTD PMID:35295148 Snapc5 Rat trichostatin A affects expression ISO SNAPC5 (Homo sapiens) 6480464 trichostatin A affects the expression of SNAPC5 mRNA CTD PMID:28542535 Snapc5 Rat valproic acid decreases expression ISO SNAPC5 (Homo sapiens) 6480464 Valproic Acid results in decreased expression of SNAPC5 mRNA CTD PMID:23179753 Snapc5 Rat vinclozolin affects expression EXP 6480464 vinclozolin affects the expression of SNAPC5 mRNA CTD PMID:19015723
1,2-dimethylhydrazine (ISO) 17beta-estradiol (ISO) 2,2',4,4'-Tetrabromodiphenyl ether (ISO) 2,3',4,4',5-Pentachlorobiphenyl (ISO) 2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO) 3-isobutyl-1-methyl-7H-xanthine (ISO) 4,4'-diaminodiphenylmethane (ISO) 4,4'-sulfonyldiphenol (ISO) 4-hydroxynon-2-enal (ISO) 6-propyl-2-thiouracil (EXP) acrylamide (EXP) aristolochic acid A (ISO) arsenous acid (ISO) bisphenol A (EXP,ISO) butanal (ISO) cadmium dichloride (ISO) copper(II) sulfate (ISO) dexamethasone (ISO) diarsenic trioxide (ISO) Dibutyl phosphate (ISO) endosulfan (EXP) folic acid (ISO) gentamycin (EXP) indometacin (ISO) nitrates (ISO) ozone (ISO) paracetamol (ISO) pentanal (ISO) resveratrol (ISO) silicon dioxide (ISO) sodium arsenite (ISO) Soman (EXP) sunitinib (ISO) taurine (ISO) thioacetamide (EXP) titanium dioxide (ISO) trichostatin A (ISO) valproic acid (ISO) vinclozolin (EXP)
Snapc5 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 8 73,572,503 - 73,576,068 (+) NCBI GRCr8 mRatBN7.2 8 64,677,204 - 64,680,769 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 8 64,677,205 - 64,681,964 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 8 70,192,038 - 70,195,602 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 8 68,464,629 - 68,468,193 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 8 66,334,616 - 66,338,180 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 8 69,127,708 - 69,131,539 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 8 69,127,708 - 69,131,539 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 8 68,833,944 - 68,837,775 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 8 68,372,827 - 68,375,880 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 8 64,083,944 - 64,087,509 (+) NCBI Celera Cytogenetic Map 8 q24 NCBI
SNAPC5 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 15 66,489,748 - 66,497,762 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 15 66,490,135 - 66,497,780 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 15 66,782,086 - 66,790,100 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 15 64,569,720 - 64,577,200 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 15 64,573,827 - 64,577,123 NCBI Celera 15 43,671,873 - 43,679,351 (-) NCBI Celera Cytogenetic Map 15 q22.31 NCBI HuRef 15 43,618,786 - 43,626,283 (-) NCBI HuRef CHM1_1 15 66,900,682 - 66,908,152 (-) NCBI CHM1_1 T2T-CHM13v2.0 15 64,311,223 - 64,319,236 (-) NCBI T2T-CHM13v2.0
Snapc5 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 9 64,086,066 - 64,089,972 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 9 64,086,556 - 64,090,414 (+) Ensembl GRCm39 Ensembl GRCm38 9 64,179,297 - 64,182,688 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 9 64,179,274 - 64,183,132 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 9 64,027,104 - 64,030,495 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 9 63,977,314 - 63,980,694 (+) NCBI MGSCv36 mm8 Celera 9 61,404,590 - 61,407,981 (+) NCBI Celera Cytogenetic Map 9 C NCBI cM Map 9 34.54 NCBI
Snapc5 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955450 9,176,462 - 9,197,592 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955450 9,176,462 - 9,197,592 (+) NCBI ChiLan1.0 ChiLan1.0
SNAPC5 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 16 55,742,209 - 55,750,944 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 15 59,918,539 - 59,924,395 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 15 45,440,597 - 45,446,007 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 15 63,712,363 - 63,720,420 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 15 63,712,363 - 63,720,420 (-) Ensembl panpan1.1 panPan2
SNAPC5 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 30 30,759,501 - 30,765,484 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 30 30,759,501 - 30,765,445 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 30 30,689,157 - 30,695,601 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 30 30,955,647 - 30,962,091 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 30 30,954,138 - 30,962,075 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 30 30,885,049 - 30,891,545 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 30 30,944,431 - 30,951,094 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 30 31,186,078 - 31,192,524 (-) NCBI UU_Cfam_GSD_1.0
Snapc5 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024408640 108,782,461 - 108,786,592 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936471 26,627,778 - 26,634,763 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936471 26,629,765 - 26,634,640 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SNAPC5 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 1 164,467,599 - 164,475,011 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 1 164,459,111 - 164,475,053 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 1 182,181,550 - 182,189,349 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SNAPC5 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 26 17,052,898 - 17,056,839 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 26 17,052,976 - 17,056,245 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666048 124,392,625 - 124,399,376 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Snapc5 (Heterocephalus glaber - naked mole-rat)
.
Predicted Target Of
Count of predictions: 86 Count of miRNA genes: 77 Interacting mature miRNAs: 79 Transcripts: ENSRNOT00000013490 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
1298065 Scl16 Serum cholesterol level QTL 16 3.8 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 8 30856404 75856404 Rat 1554321 Bmd3 Bone mineral density QTL 3 7.9 0.0001 femur mineral mass (VT:0010011) volumetric bone mineral density (CMO:0001553) 8 40952565 123900184 Rat 1578769 Uae31 Urinary albumin excretion QTL 31 3.3 0.001 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 8 30848154 101699754 Rat 1298079 Activ2 Activity QTL 2 9.5 0.000001 voluntary movement trait (VT:0003491) rearing measurement (CMO:0001515) 8 41866876 86866876 Rat 70161 Bp62 Blood pressure QTL 62 2.9 0.001 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 8 42692684 90165460 Rat 1578765 Klgr1 Kidney lesion grade QTL 1 3.3 0.0001 kidney morphology trait (VT:0002135) organ lesion measurement (CMO:0000677) 8 30848154 101699754 Rat 1582222 Epfw2 Epididymal fat weight QTL 2 3.2 0.0005 epididymal fat pad mass (VT:0010421) epididymal fat pad weight to body weight ratio (CMO:0000658) 8 31737729 76737729 Rat 61464 Niddm11 Non-insulin dependent diabetes mellitus QTL 11 3.1 0.001 blood insulin amount (VT:0001560) plasma insulin level (CMO:0000342) 8 35582032 80582032 Rat 4889938 Bss89 Bone structure and strength QTL 89 3.8 tibia size trait (VT:0100001) tibia cortical bone volume (CMO:0001725) 8 50095249 82460899 Rat 1578755 Pur5 Proteinuria QTL 5 3.3 0.0001 urine total protein amount (VT:0000032) urine total protein excretion rate (CMO:0000756) 8 30848154 101699754 Rat 1300146 Rf17 Renal function QTL 17 2.9 renal blood flow trait (VT:2000006) absolute change in renal blood flow rate (CMO:0001168) 8 28242912 73242912 Rat 8662823 Vetf5 Vascular elastic tissue fragility QTL 5 1.9 artery integrity trait (VT:0010639) patent ductus arteriosus score (CMO:0002566) 8 28242912 99525068 Rat 2313088 Bss75 Bone structure and strength QTL 75 3.1 0.0001 body length (VT:0001256) body length, nose to rump (CMO:0000079) 8 30848154 82460899 Rat 1358896 Bp262 Blood pressure QTL 262 2.89 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 8 27205715 99103503 Rat 731182 Uae24 Urinary albumin excretion QTL 24 6.4 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 8 19331152 93965294 Rat 724514 Uae15 Urinary albumin excretion QTL 15 2.9 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 8 29502665 70386295 Rat 631842 Inf1 Infertility severity QTL 1 4.1 0.001 seminal gland mass (VT:0010524) seminal vesicle wet weight (CMO:0001603) 8 22662330 67662330 Rat 737824 Hcar10 Hepatocarcinoma resistance QTL 10 2.9 liver integrity trait (VT:0010547) liver tumorous lesion number (CMO:0001068) 8 40713066 82925667 Rat 1331769 Rf39 Renal function QTL 39 3.871 urine output (VT:0003620) timed urine volume (CMO:0000260) 8 41866876 75097878 Rat 61358 Bp39 Blood pressure QTL 39 2 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 8 35551938 80551938 Rat 1358906 Bp253 Blood pressure QTL 253 4 0.0004 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 8 40713066 93965294 Rat 1358907 Cm40 Cardiac mass QTL 40 1.89 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 8 27205715 99103503 Rat 70197 BpQTLcluster8 Blood pressure QTL cluster 8 3.482 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 8 46531639 119088626 Rat 2316950 Scl66 Serum cholesterol level QTL 66 4.1 blood cholesterol amount (VT:0000180) plasma total cholesterol level (CMO:0000585) 8 30848259 105647037 Rat 1582254 Kidm31 Kidney mass QTL 31 3 kidney mass (VT:0002707) both kidneys wet weight (CMO:0000085) 8 54237644 85365202 Rat 10402857 Bp380 Blood pressure QTL 380 0.95 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 8 53968765 98968765 Rat 1358892 Kidm26 Kidney mass QTL 26 3.69 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 8 27205715 99103503 Rat 631216 Stl9 Serum triglyceride level QTL 9 4.71 0.0001 blood triglyceride amount (VT:0002644) serum triglyceride level (CMO:0000360) 8 41867010 70386132 Rat 5684973 Bss100 Bone structure and strength QTL 100 4.7 tibia area (VT:1000281) tibia area measurement (CMO:0001382) 8 50095249 82460899 Rat 1582243 Bw66 Body weight QTL 66 3.4 0.0048 body mass (VT:0001259) body weight (CMO:0000012) 8 54237644 85365202 Rat 2313057 Bss76 Bone structure and strength QTL 76 3 0.0001 tibia size trait (VT:0100001) tibia midshaft cross-sectional area (CMO:0001717) 8 30848154 82460899 Rat 12879878 Bw183 Body weight QTL 183 0.001 body mass (VT:0001259) body weight (CMO:0000012) 8 43296169 98968765 Rat 1300177 Cm2 Cardiac mass QTL 2 3.65 heart mass (VT:0007028) heart weight (CMO:0000017) 8 54259986 100382532 Rat 1549908 Neudeg1 Neurodegradation QTL 1 5.5 0 nervous system integrity trait (VT:0010566) logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986) 8 30188867 94457446 Rat 12879879 Cm99 Cardiac mass QTL 99 0.001 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 8 43296169 98968765 Rat 2313067 Bss77 Bone structure and strength QTL 77 3.1 0.0001 tibia size trait (VT:0100001) tibia midshaft endosteal cross-sectional area (CMO:0001716) 8 30848154 82460899 Rat 12879880 Cm100 Cardiac mass QTL 100 0.001 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 8 43296169 98968765 Rat 12879881 Cm101 Cardiac mass QTL 101 0.001 heart right ventricle mass (VT:0007033) heart right ventricle weight to body weight ratio (CMO:0000914) 8 43296169 98968765 Rat 12879882 Am8 Aortic mass QTL 8 0.001 aorta mass (VT:0002845) aorta weight to aorta length to body weight ratio (CMO:0002722) 8 43296169 98968765 Rat 12879883 Kidm65 Kidney mass QTL 65 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 8 43296169 98968765 Rat 1358912 Bw51 Body weight QTL 51 2.95 body mass (VT:0001259) body weight (CMO:0000012) 8 51351728 107062046 Rat 2313086 Bss60 Bone structure and strength QTL 60 4.1 0.0001 tibia length (VT:0004357) tibia length (CMO:0000450) 8 50095249 82460899 Rat 2303171 Bp331 Blood pressure QTL 331 5.57 0.005 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 8 61290298 119084929 Rat 2293697 Bmd39 Bone mineral density QTL 39 femur strength trait (VT:0010010) femur total energy absorbed before break (CMO:0001677) 8 54043744 98968765 Rat 1331837 Bw23 Body weight QTL 23 4.19 0.00007 body mass (VT:0001259) body weight (CMO:0000012) 8 46531722 99083736 Rat 1331838 Niddm61 Non-insulin dependent diabetes mellitus QTL 61 3.53 0.0004 blood insulin amount (VT:0001560) plasma insulin level (CMO:0000342) 8 36469535 99083736 Rat 631650 Stl6 Serum triglyceride level QTL 6 4 0.0019 blood triglyceride amount (VT:0002644) plasma triglyceride level (CMO:0000548) 8 10378157 112202585 Rat 1581557 Eae16 Experimental allergic encephalomyelitis QTL 16 3.8 nervous system integrity trait (VT:0010566) experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) 8 8462195 110921472 Rat 631271 Lecl1 Lens clarity QTL 1 0.001 lens clarity trait (VT:0001304) age of onset/diagnosis of cataract (CMO:0001584) 8 18984168 84531599 Rat 2303564 Gluco43 Glucose level QTL 43 3 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 8 26130187 71130187 Rat 2303570 Gluco48 Glucose level QTL 48 2 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 8 49805831 94805831 Rat 2313046 Bss78 Bone structure and strength QTL 78 3.5 0.0001 tibia strength trait (VT:1000284) tibia total energy absorbed before break (CMO:0001736) 8 30848154 82460899 Rat 2303572 Insul13 Insulin level QTL 13 2 blood insulin amount (VT:0001560) blood insulin level (CMO:0000349) 8 26130187 71130187 Rat 2301402 Bp316 Blood pressure QTL 316 0.005 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 8 53968765 98968765 Rat 631664 Hcar3 Hepatocarcinoma resistance QTL 3 2.9 0.0005 liver integrity trait (VT:0010547) volume of individual liver tumorous lesion (CMO:0001078) 8 54237644 99103503 Rat
RH138294
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 8 64,680,588 - 64,680,712 (+) MAPPER mRatBN7.2 Rnor_6.0 8 69,131,359 - 69,131,482 NCBI Rnor6.0 Rnor_5.0 8 68,837,595 - 68,837,718 UniSTS Rnor5.0 RGSC_v3.4 8 68,376,213 - 68,376,336 UniSTS RGSC3.4 Celera 8 64,087,329 - 64,087,452 UniSTS RH 3.4 Map 8 811.3 UniSTS Cytogenetic Map 8 q24 UniSTS
BE114791
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 8 64,679,849 - 64,680,018 (+) MAPPER mRatBN7.2 Rnor_6.0 8 69,130,620 - 69,130,788 NCBI Rnor6.0 Rnor_5.0 8 68,836,856 - 68,837,024 UniSTS Rnor5.0 RGSC_v3.4 8 68,375,474 - 68,375,642 UniSTS RGSC3.4 Celera 8 64,086,590 - 64,086,758 UniSTS RH 3.4 Map 8 804.6 UniSTS Cytogenetic Map 8 q24 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
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Ensembl Acc Id:
ENSRNOT00000013490 ⟹ ENSRNOP00000013490
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 8 64,677,205 - 64,681,826 (+) Ensembl Rnor_6.0 Ensembl 8 69,127,708 - 69,131,539 (+) Ensembl
Ensembl Acc Id:
ENSRNOT00000106936
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 8 64,678,205 - 64,681,964 (+) Ensembl
RefSeq Acc Id:
NM_001109643 ⟹ NP_001103113
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 8 73,572,503 - 73,576,068 (+) NCBI mRatBN7.2 8 64,677,204 - 64,680,769 (+) NCBI Rnor_6.0 8 69,127,708 - 69,131,539 (+) NCBI Rnor_5.0 8 68,833,944 - 68,837,775 (+) NCBI RGSC_v3.4 8 68,372,827 - 68,375,880 (+) RGD Celera 8 64,083,944 - 64,087,509 (+) NCBI
Sequence:
CGCTTTACGGGAGTGGAGGAGCATGTTGAGTCGGTTGCAGGAGCTCCGCAAGGAGGAAGAGACCCTGCTGCGTCTAAAGGCAGCCCTGCATGACCAACTGAACCGTCTCAAGGTCGAAGAATTGGCCC TTCAATCAATGATAAATTCTCGAGGACGGACTGAGACACTGCCTTCTCAGCCTGCACCTGAACAGTTATGTGATATGTCGCTGCAGGTGGACAATGAAGCATCAATCAATCAAACTGCACTGAAGCTG AGCACAAGGAGCCCAATGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAGGAAGAATCTGATTCGTGAAGGGGACAAGGGCTAGGGTTAGTTATACAAACTAAACTAAGTCTTCGGTACTTCATCTCTTC AAAGTCGTCTTGCAGGGCCTATGTGAGAGATATACTTATAAATGGAAGAGGCTCAGTCCATAAAGTATCTACATGCAAATACGAAGACCTGAGTTTGGAGCCCCAGAATCTGTGTAAAAACCTAGGCA GAGTGTCGAGTGCCTGTAACCCCAGCACTGGAGATAGGAAGACCAACAGATCTCTGAAGCACACTGGCCAGCCTCATCTAGCCAAAACCAGTGAGTTCCGGTTTACTCAGAGACCCCGTCTGGAGAGC AGTGGTGGTGCTCATAGAGGCACACATCTCAATCCCAGCACATATGTATGGAAAGGGTTAAATAACTGCAAAAAAAATGGTTCTTTTCTACCGAGATCTATAAATCAGTTCAATCTCACTACTAGAGG AATGGGGGAAAGTAGATAACATCTGATCATTAGGTAGAAGATCATAGTAAGACACAGTGTGAGCTAACTTTGGCATTTACACACCTGTAATCCCAGGCTTTAGGATGCTCTAGCAAGAGTGACCGCCA TCCACTGTGAAGCCAACTTGAACTATAACCAAACCAAAACAGTGCCAGGTCTTACCAGGGGTCAGTCACAGGGATGTGACAGGGGAGGCAAAGGTAGGATATCAGGTCAGTGTGATAGTCCACAAAGC AAGTTCAACAGCCATACTCCGTACAGAAAACTGCCAGCAACCTCTGGCCATCAGCACGCCTCCTCAACACACCAAGTACGTCATATACACCCCCATGCTGACAACTCCCTACACAATATCTACACTGG TTTTGTGTAAGATGTTCTTCCAAAGAAGAAACCGAGGAATATCAAAAAAAAAAAAAAAAAA
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RefSeq Acc Id:
NP_001103113 ⟸ NM_001109643
- UniProtKB:
A6J5B7 (UniProtKB/TrEMBL)
- Sequence:
MLSRLQELRKEEETLLRLKAALHDQLNRLKVEELALQSMINSRGRTETLPSQPAPEQLCDMSLQVDNEASINQTALKLSTRSPMEEEEEEEEEEEESDS
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Ensembl Acc Id:
ENSRNOP00000013490 ⟸ ENSRNOT00000013490
RGD ID: 13696065
Promoter ID: EPDNEW_R6590
Type: multiple initiation site
Name: Snapc5_1
Description: small nuclear RNA activating complex, polypeptide 5
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 8 69,127,699 - 69,127,759 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2008-03-06
Snapc5
small nuclear RNA activating complex, polypeptide 5
LOC691501
similar to small nuclear RNA activating complex, polypeptide 5
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2008-01-09
LOC691501
similar to small nuclear RNA activating complex, polypeptide 5
LOC686858
similar to small nuclear RNA activating complex, polypeptide 5
Data merged from RGD:1592493
1643240
APPROVED
2006-11-20
LOC686858
similar to small nuclear RNA activating complex, polypeptide 5
Symbol and Name status set to provisional
70820
PROVISIONAL
2006-11-19
LOC691501
similar to small nuclear RNA activating complex, polypeptide 5
Symbol and Name status set to provisional
70820
PROVISIONAL