Snapc5 (small nuclear RNA activating complex, polypeptide 5) - Rat Genome Database

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Gene: Snapc5 (small nuclear RNA activating complex, polypeptide 5) Rattus norvegicus
Analyze
Symbol: Snapc5
Name: small nuclear RNA activating complex, polypeptide 5
RGD ID: 1582813
Description: Predicted to enable RNA polymerase II general transcription initiation factor activity and RNA polymerase III general transcription initiation factor activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be located in nuclear body and nucleolus. Orthologous to human SNAPC5 (small nuclear RNA activating complex polypeptide 5); PARTICIPATES IN RNA polymerase III transcription pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LOC691501; similar to small nuclear RNA activating complex, polypeptide 5; snRNA-activating protein complex subunit 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8873,572,503 - 73,576,068 (+)NCBIGRCr8
mRatBN7.2864,677,204 - 64,680,769 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl864,677,205 - 64,681,964 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx870,192,038 - 70,195,602 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0868,464,629 - 68,468,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0866,334,616 - 66,338,180 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0869,127,708 - 69,131,539 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl869,127,708 - 69,131,539 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0868,833,944 - 68,837,775 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4868,372,827 - 68,375,880 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera864,083,944 - 64,087,509 (+)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snapc5RatBloom syndrome  ISOSNAPC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
Snapc5Ratcardiofaciocutaneous syndrome  ISOSNAPC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Cardio-facio-cutaneous syndromeClinVar 
Snapc5Ratcardiofaciocutaneous syndrome 3  ISOSNAPC5 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:24033266 more ...
Snapc5Ratcolorectal cancer  ISOSNAPC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532
Snapc5Ratlong QT syndrome  ISOSNAPC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Long QT syndromeClinVarPMID:26132555
Snapc5Ratmelorheostosis  ISOSNAPC5 (Homo sapiens)8554872ClinVar Annotator: match by term: MelorheostosisClinVarPMID:25741868 and PMID:28492532
Snapc5Ratneuronal ceroid lipofuscinosis  ISOSNAPC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Neuronal ceroid lipofuscinosisClinVarPMID:28492532
Snapc5RatNoonan syndrome  ISOSNAPC5 (Homo sapiens)8554872ClinVar Annotator: match by term: Noonan syndromeClinVarPMID:28492532
Snapc5RatRASopathy  ISOSNAPC5 (Homo sapiens)8554872ClinVar Annotator: match by term: RASopathyClinVarPMID:16199547 more ...
1 to 9 of 9 rows

1 to 20 of 47 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snapc5Rat1,2-dimethylhydrazine multiple interactionsISOSnapc5 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of SNAPC5 mRNACTDPMID:22206623
Snapc5Rat1,2-dimethylhydrazine decreases expressionISOSnapc5 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of SNAPC5 mRNACTDPMID:22206623
Snapc5Rat17beta-estradiol increases expressionISOSnapc5 (Mus musculus)6480464Estradiol results in increased expression of SNAPC5 mRNACTDPMID:39298647
Snapc5Rat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOSnapc5 (Mus musculus)64804642 more ...CTDPMID:30294300
Snapc5Rat2,3',4,4',5-Pentachlorobiphenyl increases expressionISOSnapc5 (Mus musculus)64804642 more ...CTDPMID:31388691
Snapc5Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of SNAPC5 mRNACTDPMID:22298810
Snapc5Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of SNAPC5 mRNACTDPMID:33387578
Snapc5Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOSnapc5 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of SNAPC5 mRNACTDPMID:21570461 and PMID:24680724
Snapc5Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOSNAPC5 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of SNAPC5 mRNACTDPMID:28628672
Snapc5Rat4,4'-diaminodiphenylmethane affects expressionISOSnapc5 (Mus musculus)64804644 and 4'-diaminodiphenylmethane affects the expression of SNAPC5 mRNACTDPMID:18648102
Snapc5Rat4,4'-sulfonyldiphenol multiple interactionsISOSNAPC5 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in increased expression of SNAPC5 mRNACTDPMID:28628672
Snapc5Rat4,4'-sulfonyldiphenol increases expressionISOSnapc5 (Mus musculus)6480464bisphenol S results in increased expression of SNAPC5 mRNACTDPMID:39298647
Snapc5Rat4-hydroxynon-2-enal increases expressionISOSnapc5 (Mus musculus)64804644-hydroxy-2-nonenal results in increased expression of SNAPC5 mRNACTDPMID:19191707
Snapc5Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of SNAPC5 mRNACTDPMID:24780913
Snapc5Ratacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of SNAPC5 mRNACTDPMID:28959563
Snapc5Rataristolochic acid A decreases expressionISOSNAPC5 (Homo sapiens)6480464aristolochic acid I results in decreased expression of SNAPC5 mRNACTDPMID:33212167
Snapc5Ratarsenous acid decreases expressionISOSNAPC5 (Homo sapiens)6480464Arsenic Trioxide results in decreased expression of SNAPC5 mRNACTDPMID:20458559
Snapc5Ratbisphenol A increases expressionISOSnapc5 (Mus musculus)6480464bisphenol A results in increased expression of SNAPC5 mRNACTDPMID:26063408
Snapc5Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of SNAPC5 mRNACTDPMID:31129395
Snapc5Ratbisphenol A affects methylationISOSnapc5 (Mus musculus)6480464bisphenol A affects the methylation of SNAPC5 promoterCTDPMID:27334623

1 to 20 of 47 rows

Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snapc5Ratnuclear body located_inISOSNAPC5 (Homo sapiens) and UniProtKB:O75971-11624291 RGDGO_REF:0000052
Snapc5Ratnucleolus located_inISOSNAPC5 (Homo sapiens) and UniProtKB:O75971-11624291 RGDGO_REF:0000052
Snapc5Ratnucleoplasm located_inISOSNAPC5 (Homo sapiens) and UniProtKB:O75971-11624291 RGDGO_REF:0000052

Molecular Function

  

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Snapc5RatRNA polymerase III transcription pathway   ISOSNAPC5 (Homo sapiens)9588284 RGD 

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. A structural perspective on RNA polymerase I and RNA polymerase III transcription machineries. Vannini A Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):258-64. doi: 10.1016/j.bbagrm.2012.09.009. Epub 2012 Sep 29.
PMID:8889548   PMID:9732265  



Snapc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8873,572,503 - 73,576,068 (+)NCBIGRCr8
mRatBN7.2864,677,204 - 64,680,769 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl864,677,205 - 64,681,964 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx870,192,038 - 70,195,602 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0868,464,629 - 68,468,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0866,334,616 - 66,338,180 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0869,127,708 - 69,131,539 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl869,127,708 - 69,131,539 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0868,833,944 - 68,837,775 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4868,372,827 - 68,375,880 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera864,083,944 - 64,087,509 (+)NCBICelera
Cytogenetic Map8q24NCBI
SNAPC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381566,489,748 - 66,497,762 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1566,490,135 - 66,497,780 (-)EnsemblGRCh38hg38GRCh38
GRCh371566,782,086 - 66,790,100 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361564,569,720 - 64,577,200 (-)NCBINCBI36Build 36hg18NCBI36
Build 341564,573,827 - 64,577,123NCBI
Celera1543,671,873 - 43,679,351 (-)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1543,618,786 - 43,626,283 (-)NCBIHuRef
CHM1_11566,900,682 - 66,908,152 (-)NCBICHM1_1
T2T-CHM13v2.01564,311,223 - 64,319,236 (-)NCBIT2T-CHM13v2.0
Snapc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39964,086,066 - 64,089,972 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl964,086,556 - 64,090,414 (+)EnsemblGRCm39 Ensembl
GRCm38964,179,297 - 64,182,688 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl964,179,274 - 64,183,132 (+)EnsemblGRCm38mm10GRCm38
MGSCv37964,027,104 - 64,030,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36963,977,314 - 63,980,694 (+)NCBIMGSCv36mm8
Celera961,404,590 - 61,407,981 (+)NCBICelera
Cytogenetic Map9CNCBI
cM Map934.54NCBI
Snapc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554509,176,462 - 9,197,592 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554509,176,462 - 9,197,592 (+)NCBIChiLan1.0ChiLan1.0
SNAPC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21655,742,209 - 55,750,944 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11559,918,539 - 59,924,395 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01545,440,597 - 45,446,007 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11563,712,363 - 63,720,420 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1563,712,363 - 63,720,420 (-)Ensemblpanpan1.1panPan2
SNAPC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13030,759,501 - 30,765,484 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3030,759,501 - 30,765,445 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3030,689,157 - 30,695,601 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03030,955,647 - 30,962,091 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3030,954,138 - 30,962,075 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13030,885,049 - 30,891,545 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03030,944,431 - 30,951,094 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03031,186,078 - 31,192,524 (-)NCBIUU_Cfam_GSD_1.0
Snapc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640108,782,461 - 108,786,592 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647126,627,778 - 26,634,763 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647126,629,765 - 26,634,640 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAPC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1164,467,599 - 164,475,011 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11164,459,111 - 164,475,053 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21182,181,550 - 182,189,349 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNAPC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12617,052,898 - 17,056,839 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2617,052,976 - 17,056,245 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048124,392,625 - 124,399,376 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snapc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247816,216,277 - 6,222,282 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247816,216,255 - 6,222,439 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Snapc5
5 total Variants

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:77
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000013490
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 55 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat

1 to 10 of 55 rows
RH138294  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2864,680,588 - 64,680,712 (+)MAPPERmRatBN7.2
Rnor_6.0869,131,359 - 69,131,482NCBIRnor6.0
Rnor_5.0868,837,595 - 68,837,718UniSTSRnor5.0
RGSC_v3.4868,376,213 - 68,376,336UniSTSRGSC3.4
Celera864,087,329 - 64,087,452UniSTS
RH 3.4 Map8811.3UniSTS
Cytogenetic Map8q24UniSTS
BE114791  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2864,679,849 - 64,680,018 (+)MAPPERmRatBN7.2
Rnor_6.0869,130,620 - 69,130,788NCBIRnor6.0
Rnor_5.0868,836,856 - 68,837,024UniSTSRnor5.0
RGSC_v3.4868,375,474 - 68,375,642UniSTSRGSC3.4
Celera864,086,590 - 64,086,758UniSTS
RH 3.4 Map8804.6UniSTS
Cytogenetic Map8q24UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000013490   ⟹   ENSRNOP00000013490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl864,677,205 - 64,681,826 (+)Ensembl
Rnor_6.0 Ensembl869,127,708 - 69,131,539 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl864,678,205 - 64,681,964 (+)Ensembl
RefSeq Acc Id: NM_001109643   ⟹   NP_001103113
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8873,572,503 - 73,576,068 (+)NCBI
mRatBN7.2864,677,204 - 64,680,769 (+)NCBI
Rnor_6.0869,127,708 - 69,131,539 (+)NCBI
Rnor_5.0868,833,944 - 68,837,775 (+)NCBI
RGSC_v3.4868,372,827 - 68,375,880 (+)RGD
Celera864,083,944 - 64,087,509 (+)NCBI
Sequence:
Protein RefSeqs NP_001103113 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL95790 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000099664
RefSeq Acc Id: NP_001103113   ⟸   NM_001109643
- UniProtKB: A6J5B7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013490   ⟸   ENSRNOT00000013490

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTK9-F1-model_v2 AlphaFold D3ZTK9 1-99 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696065
Promoter ID:EPDNEW_R6590
Type:multiple initiation site
Name:Snapc5_1
Description:small nuclear RNA activating complex, polypeptide 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0869,127,699 - 69,127,759EPDNEW


1 to 14 of 14 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-30105 BioCyc
Ensembl Genes ENSRNOG00000010156 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000013490 ENTREZGENE
InterPro SNAPC5 UniProtKB/TrEMBL
KEGG Report rno:691501 UniProtKB/TrEMBL
NCBI Gene 691501 ENTREZGENE
PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 5 UniProtKB/TrEMBL
  SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 5 UniProtKB/TrEMBL
Pfam SNAPC5 UniProtKB/TrEMBL
PhenoGen Snapc5 PhenoGen
RatGTEx ENSRNOG00000010156 RatGTEx
RNAcentral URS00022B0CD1 RNACentral
  URS00022B68D1 RNACentral
UniProt A6J5B7 ENTREZGENE, UniProtKB/TrEMBL
1 to 14 of 14 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Snapc5  small nuclear RNA activating complex, polypeptide 5  LOC691501  similar to small nuclear RNA activating complex, polypeptide 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC691501  similar to small nuclear RNA activating complex, polypeptide 5  LOC686858  similar to small nuclear RNA activating complex, polypeptide 5  Data merged from RGD:1592493 1643240 APPROVED
2006-11-20 LOC686858  similar to small nuclear RNA activating complex, polypeptide 5      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691501  similar to small nuclear RNA activating complex, polypeptide 5      Symbol and Name status set to provisional 70820 PROVISIONAL