Ddx6 (DEAD-box helicase 6) - Rat Genome Database

Name: Ddx6
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Ddx6 (DEAD-box helicase 6) Rattus norvegicus

Analyze

Symbol:

Ddx6

Name:

DEAD-box helicase 6

RGD ID:

1564560

Description:

Predicted to enable mRNA binding activity and protein domain specific binding activity. Involved in spermatid differentiation. Located in several cellular components, including chromatoid body; concave side of sperm head; and sperm flagellum. Orthologous to human DDX6 (DEAD-box helicase 6); PARTICIPATES IN microRNA pathway; INTERACTS WITH 3,4-methylenedioxymethamphetamine; acetamide; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

DEAD (Asp-Glu-Ala-Asp) box helicase 6; DEAD (Asp-Glu-Ala-Asp) box polypeptide 6; hypothetical protein LOC500988; LOC500988; probable ATP-dependent RNA helicase DDX6; RGD1564560; similar to RCK

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DDX6 (DEAD-box helicase 6)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Ddx6 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 6)	HGNC	NCBI, HomoloGene, Inparanoid, Panther, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DDX6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ddx6 (DEAD-box helicase 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ddx6 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Homo sapiens (human):	DDX6 (DEAD-box helicase 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	ddx6 (DEAD (Asp-Glu-Ala-Asp) box helicase 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	ddx61 (DEAD (Asp-Glu-Ala-Asp) box helicase 61)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	DHH1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	cgh-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	me31B	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	44,931,127 - 44,967,773 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	8	44,931,974 - 44,964,405 (+)	Ensembl
Rnor_6.0	8	48,924,768 - 48,961,394 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,925,604 - 48,958,026 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,573,536 - 47,605,957 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	8	44,516,910 - 44,549,312 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Dwarfism (ISO)

Glycogen Storage Disease IB (ISO)

immunodeficiency 17 (ISO)

immunodeficiency 18 (ISO)

immunodeficiency 19 (ISO)

inflammatory bowel disease 28 (ISO)

INTELLECTUAL DEVELOPMENTAL DISORDER WITH IMPAIRED LANGUAGE AND DYSMORPHIC FACIES (ISO)

long QT syndrome 10 (ISO)

rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

acetamide (EXP)

acetazolamide (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid (ISO)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

Brodifacoum (EXP)

carbon nanotube (ISO)

cefaloridine (EXP)

chloroprene (EXP)

cocaine (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyproconazole (ISO)

dexamethasone (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

folic acid (ISO)

geldanamycin (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

leflunomide (ISO)

methylmercury chloride (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

progesterone (ISO)

propiconazole (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

tert-butyl hydroperoxide (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (ISO)

trichostatin A (ISO)

triphenyl phosphate (EXP)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of neuron differentiation (ISO)

negative regulation of translation (ISO)

P-body assembly (IBA,ISO)

positive regulation of miRNA-mediated gene silencing by inhibition of translation (ISO)

spermatid differentiation (IEP)

spermatogenesis (IEP)

stem cell population maintenance (ISO)

stress granule assembly (IBA)

viral RNA genome packaging (ISO)

Cellular Component

adherens junction (IDA)

chromatoid body (IDA)

concave side of sperm head (IDA)

cytoplasm (ISO)

cytoplasmic ribonucleoprotein granule (ISO)

cytoplasmic stress granule (IBA,ISO)

cytosol (IEA,ISO)

heterochromatin (IDA)

mitochondrion (IDA)

nucleolus (IDA)

nucleus (ISO)

outer dense fiber (IDA)

P-body (IBA,ISO)

perinuclear region of cytoplasm (IDA)

RISC complex (ISO)

sperm annulus (IDA)

Molecular Function

ATP binding (IEA)

hydrolase activity (IEA)

molecular_function (ND)

mRNA binding (IBA)

protein binding (ISO)

protein domain specific binding (ISO)

RNA helicase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

microRNA pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Jonas S and Izaurralde E, Genes Dev. 2013 Dec 15;27(24):2628-41. doi: 10.1101/gad.227843.113.
3.	Kawahara C, etal., Histochem Cell Biol. 2014 Jan;141(1):111-21. doi: 10.1007/s00418-013-1153-2. Epub 2013 Oct 20.
4.	RGD automated import pipeline for gene-chemical interactions
5.	RGD comprehensive gene curation

Additional References at PubMed

PMID:16699599	PMID:17392519	PMID:19946888	PMID:20014101	PMID:20616046	PMID:20826699	PMID:22022269	PMID:22658674	PMID:22681889	PMID:22915799	PMID:23125361	PMID:24768540
PMID:25456498	PMID:25468996	PMID:25931508	PMID:26184334	PMID:31422817

Genomics

Comparative Map Data

Ddx6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	44,931,127 - 44,967,773 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	8	44,931,974 - 44,964,405 (+)	Ensembl
Rnor_6.0	8	48,924,768 - 48,961,394 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,925,604 - 48,958,026 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,573,536 - 47,605,957 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	8	44,516,910 - 44,549,312 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

DDX6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	11	118,747,763 - 118,791,164 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	11	118,747,763 - 118,791,696 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	11	118,618,472 - 118,661,873 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	118,125,623 - 118,167,082 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	11	118,125,622 - 118,167,082	NCBI
Celera	11	115,780,242 - 115,819,622 (-)	NCBI
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	114,556,823 - 114,600,235 (-)	NCBI		HuRef
CHM1_1	11	118,505,094 - 118,548,632 (-)	NCBI		CHM1_1

Ddx6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	44,514,113 - 44,552,028 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	44,516,189 - 44,552,028 (+)	Ensembl
GRCm38	9	44,602,983 - 44,640,731 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	44,604,892 - 44,640,731 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	44,412,975 - 44,448,814 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	44,355,893 - 44,388,101 (+)	NCBI			mm8
Celera	9	41,863,195 - 41,899,760 (+)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI
cM Map	9	24.84	NCBI

Ddx6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	19,854,785 - 19,889,426 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	19,854,785 - 19,889,422 (-)	NCBI	ChiLan1.0	ChiLan1.0

DDX6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	117,515,778 - 117,559,364 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	117,515,778 - 117,559,364 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	11	113,587,220 - 113,630,995 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

DDX6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	15,001,988 - 15,034,128 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	15,002,246 - 15,032,348 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	15,054,936 - 15,087,107 (+)	NCBI
ROS_Cfam_1.0	5	14,945,428 - 14,978,064 (+)	NCBI
UMICH_Zoey_3.1	5	15,084,071 - 15,116,251 (+)	NCBI
UNSW_CanFamBas_1.0	5	14,987,876 - 15,020,015 (+)	NCBI
UU_Cfam_GSD_1.0	5	15,027,713 - 15,060,132 (+)	NCBI

Ddx6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	100,827,190 - 100,860,033 (-)	NCBI
SpeTri2.0	NW_004936542	3,748,599 - 3,781,405 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DDX6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	46,025,445 - 46,063,814 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	46,025,616 - 46,063,836 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	51,060,184 - 51,098,397 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DDX6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	110,128,450 - 110,172,383 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	1	110,135,471 - 110,167,463 (-)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666043	15,861,815 - 15,906,220 (+)	NCBI	Vero_WHO_p1.0

Ddx6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624784	14,142,051 - 14,178,845 (-)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

RH137988

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	44,959,396 - 44,959,607 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	48,953,020 - 48,953,230	NCBI	Rnor6.0
Rnor_5.0	8	47,571,340 - 47,571,550	UniSTS	Rnor5.0
RGSC_v3.4	8	47,600,951 - 47,601,161	UniSTS	RGSC3.4
Celera	8	44,544,306 - 44,544,516	UniSTS
RH 3.4 Map	8	437.5	UniSTS
Cytogenetic Map	8	q22	UniSTS

UniSTS:265520

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	13	5,345,324 - 5,345,813	NCBI	Rnor5.0
Rnor_5.0	8	24,880,842 - 24,881,319	NCBI	Rnor5.0
Rnor_5.0	13	5,347,411 - 5,347,833	NCBI	Rnor5.0
Rnor_5.0	8	4,260,633 - 4,261,122	NCBI	Rnor5.0
RGSC_v3.4	1	62,083,022 - 62,083,510	UniSTS	RGSC3.4
RGSC_v3.4	13	22,163,646 - 22,164,135	UniSTS	RGSC3.4
Celera	8	3,540,093 - 3,540,581	UniSTS
Celera	13	3,810,235 - 3,810,724	UniSTS
Cytogenetic Map	13	p12	UniSTS
Cytogenetic Map	8	q22	UniSTS
Cytogenetic Map	1	q12	UniSTS

UniSTS:265517

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	22,204,939 - 22,205,700 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	63,776,113 - 63,776,875 (-)	MAPPER	mRatBN7.2
Rnor_6.0	8	4,243,475 - 4,244,236	NCBI	Rnor6.0
Rnor_6.0	8	24,844,522 - 24,845,282	NCBI	Rnor6.0
Rnor_5.0	8	4,259,892 - 4,260,653	UniSTS	Rnor5.0
Rnor_5.0	8	24,881,300 - 24,882,060	UniSTS	Rnor5.0
Cytogenetic Map	13	p12	UniSTS
Cytogenetic Map	1	q12	UniSTS
Cytogenetic Map	8	q22	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	26644912	46711092	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	27205715	54998217	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	28242912	53961020	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	29502665	50095447	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	58482492	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	30848154	61290444	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
5684993	Bmd84	Bone mineral density QTL 84	4.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	8	42692684	50095447	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	142
Count of miRNA genes:	89
Interacting mature miRNAs:	123
Transcripts:	ENSRNOT00000017391
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	57	41	19	41	8	10	74	35	41	11	8
Low		1						1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000077445 ⟹ ENSRNOP00000073900

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	44,931,974 - 44,964,405 (+)	Ensembl
Rnor_6.0 Ensembl	8	48,925,604 - 48,958,026 (+)	Ensembl

RefSeq Acc Id:

NM_001109292 ⟹ NP_001102762

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,931,974 - 44,964,405 (+)	NCBI
Rnor_6.0	8	48,925,604 - 48,958,026 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI
RGSC_v3.4	8	47,573,536 - 47,605,957 (+)	RGD
Celera	8	44,516,910 - 44,549,312 (+)	RGD

Sequence:

show sequence

GGAGCTTCGAGTCAACAATAAAGGACCGAGGGTGCGGAGCGGGAGTGGCCTGGGTGGTAGGACT
CGGGCCCGAGCCGCGGGGCGTGGGATTGAAGTGAGTGAATTCAGATATAATTCAAGCTTGTTAG
AGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTGCTGCTTACC
GGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAGCAAGACTTA
TTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAA
GTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGAACCCTGTTA
TCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCCGGCCCTGG
AGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAAT
GGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGA
CTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAA
TGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAA
AAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTA
GAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCT
GAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGT
CAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAA
CCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGCTACCCCTGG
CAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTG
GATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACAC
TACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTAT
GAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTG
ACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTCTTCTCCA
GGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTTACTGGCCAA
GAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGA
AATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTA
CCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGA
GACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTG
ATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAAC
CCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGA
TGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGTGACGCATCA
TTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAACTATGAAGA
GTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAAAAGAAGAAA
TGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCACTAACTGCT
GGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGGGAGAAACCC
TAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCGACTCTACTG
CATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTACTTATTTGTG
CAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGAGGAATCAAC
AAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTTCAAGTTGAA
GTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTGATGGTAGCG
CCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTAAATA
CATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTAGACGCACCA
TCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCCTCTGTGCTC
TACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGTGCAAAGACT
TGTCGGAGCC

hide sequence

RefSeq Acc Id:

XM_006242950 ⟹ XP_006243012

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,931,872 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,547 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

GGGGCCGGGTGGGGGCGGGCGGAGGTTTCCGAGGAGGAAGGAGCCGCCGCCATTTTGGGAGCTT
CGAGTCAACAATAAAGGACCGAGGATTGAAGTGAGTGAATTCAGATATAATTCAAGCTTGTTAG
AGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTGCTGCTTACC
GGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAGCAAGACTTA
TTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAA
GTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGAACCCTGTTA
TCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCCGGCCCTGG
AGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAAT
GGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGA
CTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAA
TGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAA
AAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTA
GAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCT
GAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGT
CAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAA
CCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGCTACCCCTGG
CAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTG
GATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACAC
TACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTAT
GAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTG
ACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTCTTCTCCA
GGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTTACTGGCCAA
GAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGA
AATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTA
CCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGA
GACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTG
ATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAAC
CCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGA
TGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGTGACGCATCA
TTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAACTATGAAGA
GTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAAAAGAAGAAA
TGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCACTAACTGCT
GGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGGGAGAAACCC
TAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCGACTCTACTG
CATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTACTTATTTGTG
CAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGAGGAATCAAC
AAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTTCAAGTTGAA
GTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTGATGGTAGCG
CCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTAAATA
CATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTAGACGCACCA
TCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCCTCTGTGCTC
TACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGTGCAAAGACT
TGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATAGAAAATTGTATGTGTAT
ACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATATATATATATAAATATATA
TATATACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGGGATTAAGGGATTAGAGT
GATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACACTAAATTCTAAAAAGTG
CTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTGGAAAAGGGCCCAGAAGC
CCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAGCGGTCTTAGCAGACAGC
AAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCTGTGGTTTGGCTCTCCTG
TCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAGATTAATCTTCCTTGGAG
TATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACATGGATTCGTACTTCACTG
GACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGTTATCTGCGGTCACCTCC
TGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTACATGTTTGCGGGAATGGG
CGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCATTCTCGTGCCTGCCGCA
GCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCAGATGCTTTAGGTGGGTA
GTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGG
AGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTTTAATTCCCTTTTAACCC
AGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAACAAAATTTAAAAAAAAAA
CTGATTTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAGGTATGTCACGTGTACGC
TGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTGCTTTTTGACTGTGCCTA
GTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGATCAAAATCCTAAAGATGC
CTCCTTACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTGCACGGTACAAAACCCCA
AAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAAGGAAGTCACTTTTTTAG
GGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTGCCCTTGTACCGATGCAG
TTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAGATCAGCAGCAGGAACGG
AGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCAACAAGGTGCAGTCTCTT
GCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCTCTTAAAGCACAGACTCC
ACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTTGGACTAGCTGAGCACCC
CACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAGCTGTTAATGGAAAGATG
CCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTTTTCTTTTTTTCCTTTTT
AATCCCTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCAGGTTCTTTCCAGTAATT
TTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGATAAAAACTATGTCCTAT
TTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGTAATGAGTCACAGACTGT
TACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATGTTCTGAACATGAAAAAA
CTTTCTTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAAAGGAAAACCTAAGTAAT
TCTAAATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGCCCAAAATGGTGGGGTGG
GGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCTTTCCTTGGCCACCTGCT
TTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAAAGCTTTGAAAAGTGTTG
GAAACAAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTTTGTTTTTTGTTTTGTTT
TGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAAAGGGAGGGTGTCTGCAC
TAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTGCCTTTAGCCACACTCCT
GACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTAAGCCATGTTATTTTAAT
TGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTACTGTGGAATGATTTTCTT
GCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAAGTAAGCCAGATTTTGGG
TGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCATAAAGATAGTTTTTTAA
AACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCTTTGGAGGAAAGAGTTAA
GTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGGCCTGGACGCTGCCCCTC
CACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGACAGAGCTGGGCAGGGCAA
GGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAACCAGTGGTTCTTGGGGAG
GGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACCAATTAGAAAAAAACTAC
AATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCACAAGGGACCAGTTCCAC
TTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGAAAATTGGCTTTCTGTTT
AATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGTTACAGTATATGTACATG
TCTATGGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGATGGTTGGTAAAATCTTG
ATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_006242951 ⟹ XP_006243013

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,931,699 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,363 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

GAGGGAGGGAGACGACAGCGGCGGGCGAGGGAGGGGGCAGAGCAGCAGAGTCAGCTCCGCTCAG
CGGCGACATCCGGGGCGCCGGCACAGCGGGCTACGGCCGAGATTGAAGTGAGTGAATTCAGATA
TAATTCAAGCTTGTTAGAGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTT
AACTACTGCTGCTTACCGGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCAT
ATATTGAGCAAGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTC
TCTACTGACTTTGAAAAGTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAG
GACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAG
GCCAGTGCCGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACA
CCAGCACAATCAATAATGGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGG
TGATGACTGGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTG
ACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTT
TTGAAATGGGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGG
TAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTA
CTTGAACGGCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAAC
TTGCTCTACAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGAT
GGCGACCACTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTG
GTGATTGCTACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATG
TCCAGATGATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGA
GGATATTATTCTCACACTACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTT
AGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGC
TAACTCTGAAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCT
CAATACACTCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGA
GTTGAGTTACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAA
TGAGGCAGGAACATAGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGT
TTGCACTGATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGAC
TTCCCAAAGCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTG
GCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCT
GGGGACAGAGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCAC
AGTGAGCCTGCAGAAGATGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTT
GGATCTGTGACGCATCATTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTA
TTTTGGAACTATGAAGAGTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAA
AAACTGAAAAGAAGAAATGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTT
TCGTTGCACTAACTGCTGGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAA
AAGAAAGGGAGAAACCCTAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCC
GATAGCCGACTCTACTGCATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAG
CTTACTACTTATTTGTGCAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCA
CAGCCCGAGGAATCAACAAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCA
TTTGGTTTCAAGTTGAAGTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTG
GACTAGTGATGGTAGCGCCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTC
CATCCACACTGTAAATACATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGG
GCTGAGTAGACGCACCATCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATAT
GACAAGCCTCTGTGCTCTACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGG
CACTGGGTGCAAAGACTTGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATA
GAAAATTGTATGTGTATACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATAT
ATATATATAAATATATATATATACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGG
GATTAAGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACA
CTAAATTCTAAAAAGTGCTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTG
GAAAAGGGCCCAGAAGCCCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAG
CGGTCTTAGCAGACAGCAAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCT
GTGGTTTGGCTCTCCTGTCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAG
ATTAATCTTCCTTGGAGTATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACAT
GGATTCGTACTTCACTGGACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGT
TATCTGCGGTCACCTCCTGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTAC
ATGTTTGCGGGAATGGGCGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCA
TTCTCGTGCCTGCCGCAGCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCA
GATGCTTTAGGTGGGTAGTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCT
GATCTCCAGGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTT
TAATTCCCTTTTAACCCAGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAAC
AAAATTTAAAAAAAAAACTGATTTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAG
GTATGTCACGTGTACGCTGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTG
CTTTTTGACTGTGCCTAGTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGAT
CAAAATCCTAAAGATGCCTCCTTACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTG
CACGGTACAAAACCCCAAAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAA
GGAAGTCACTTTTTTAGGGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTG
CCCTTGTACCGATGCAGTTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAG
ATCAGCAGCAGGAACGGAGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCA
ACAAGGTGCAGTCTCTTGCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCT
CTTAAAGCACAGACTCCACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTT
GGACTAGCTGAGCACCCCACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAG
CTGTTAATGGAAAGATGCCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTT
TTCTTTTTTTCCTTTTTAATCCCTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCA
GGTTCTTTCCAGTAATTTTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGA
TAAAAACTATGTCCTATTTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGT
AATGAGTCACAGACTGTTACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATG
TTCTGAACATGAAAAAACTTTCTTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAA
AGGAAAACCTAAGTAATTCTAAATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGC
CCAAAATGGTGGGGTGGGGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCT
TTCCTTGGCCACCTGCTTTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAA
AGCTTTGAAAAGTGTTGGAAACAAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTT
TGTTTTTTGTTTTGTTTTGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAA
AGGGAGGGTGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTG
CCTTTAGCCACACTCCTGACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTA
AGCCATGTTATTTTAATTGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTAC
TGTGGAATGATTTTCTTGCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAA
GTAAGCCAGATTTTGGGTGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCA
TAAAGATAGTTTTTTAAAACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCT
TTGGAGGAAAGAGTTAAGTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGG
CCTGGACGCTGCCCCTCCACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGAC
AGAGCTGGGCAGGGCAAGGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAAC
CAGTGGTTCTTGGGGAGGGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACC
AATTAGAAAAAAACTACAATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCA
CAAGGGACCAGTTCCACTTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGA
AAATTGGCTTTCTGTTTAATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGT
TACAGTATATGTACATGTCTATGGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGA
TGGTTGGTAAAATCTTGATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTC
CAA

hide sequence

RefSeq Acc Id:

XM_006242952 ⟹ XP_006243014

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,931,911 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,563 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

GGGCGGAGGTTTCCGAGGAGGAAGGAGCCGCCGCCATTTTGGGAGCTTCGAGTCAACAATAAAG
GACCGAGGGTGCGGAGCGGGAGTGGCCTGGGTGATTGAAGTGAGTGAATTCAGATATAATTCAA
GCTTGTTAGAGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTG
CTGCTTACCGGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAG
CAAGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGA
CTTTGAAAAGTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGA
ACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGC
CGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACA
ATCAATAATGGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACT
GGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCAC
AAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATG
GGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATA
TCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACG
GCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTA
CAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCA
CTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGC
TACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATG
ATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTA
TTCTCACACTACCTAAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACA
AAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTG
AAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACAC
TCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTT
ACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAG
GAACATAGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTG
ATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAA
GCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCC
ATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAG
AGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCC
TGCAGAAGATGAGAAACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGT
GACGCATCATTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAA
CTATGAAGAGTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAA
AAGAAGAAATGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCA
CTAACTGCTGGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGG
GAGAAACCCTAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCG
ACTCTACTGCATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTAC
TTATTTGTGCAAAGTGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGA
GGAATCAACAAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTT
CAAGTTGAAGTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTG
ATGGTAGCGCCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACA
CTGTAAATACATGTATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTA
GACGCACCATCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCC
TCTGTGCTCTACGGCGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGT
GCAAAGACTTGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATAGAAAATTG
TATGTGTATACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATATATATATAT
AAATATATATATATACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGGGATTAAGG
GATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACACTAAATTC
TAAAAAGTGCTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTGGAAAAGGG
CCCAGAAGCCCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAGCGGTCTTA
GCAGACAGCAAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCTGTGGTTTG
GCTCTCCTGTCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAGATTAATCT
TCCTTGGAGTATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACATGGATTCGT
ACTTCACTGGACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGTTATCTGCG
GTCACCTCCTGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTACATGTTTGC
GGGAATGGGCGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCATTCTCGTG
CCTGCCGCAGCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCAGATGCTTT
AGGTGGGTAGTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCA
GGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTTTAATTCCC
TTTTAACCCAGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAACAAAATTTA
AAAAAAAAACTGATTTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAGGTATGTCA
CGTGTACGCTGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTGCTTTTTGA
CTGTGCCTAGTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGATCAAAATCC
TAAAGATGCCTCCTTACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTGCACGGTAC
AAAACCCCAAAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAAGGAAGTCA
CTTTTTTAGGGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTGCCCTTGTA
CCGATGCAGTTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAGATCAGCAG
CAGGAACGGAGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCAACAAGGTG
CAGTCTCTTGCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCTCTTAAAGC
ACAGACTCCACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTTGGACTAGC
TGAGCACCCCACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAGCTGTTAAT
GGAAAGATGCCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTTTTCTTTTT
TTCCTTTTTAATCCCTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCAGGTTCTTT
CCAGTAATTTTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGATAAAAACT
ATGTCCTATTTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGTAATGAGTC
ACAGACTGTTACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATGTTCTGAAC
ATGAAAAAACTTTCTTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAAAGGAAAAC
CTAAGTAATTCTAAATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGCCCAAAATG
GTGGGGTGGGGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCTTTCCTTGG
CCACCTGCTTTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAAAGCTTTGA
AAAGTGTTGGAAACAAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTTTGTTTTTT
GTTTTGTTTTGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAAAGGGAGGG
TGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTGCCTTTAGC
CACACTCCTGACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTAAGCCATGT
TATTTTAATTGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTACTGTGGAAT
GATTTTCTTGCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAAGTAAGCCA
GATTTTGGGTGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCATAAAGATA
GTTTTTTAAAACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCTTTGGAGGA
AAGAGTTAAGTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGGCCTGGACG
CTGCCCCTCCACAGCTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGACAGAGCTGG
GCAGGGCAAGGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAACCAGTGGTT
CTTGGGGAGGGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACCAATTAGAA
AAAAACTACAATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCACAAGGGAC
CAGTTCCACTTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGAAAATTGGC
TTTCTGTTTAATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGTTACAGTAT
ATGTACATGTCTATGGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGATGGTTGGT
AAAATCTTGATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_006242954 ⟹ XP_006243016

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,931,127 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,924,768 - 48,961,394 (+)	NCBI
Rnor_5.0	8	47,543,067 - 47,579,713 (+)	NCBI

Sequence:

show sequence

TTTCTAGAAGAGTGCCACTGCCGGCAGGAGCAAAGGGTCACCTCGCCTGCACTCTGGGCTTGGT
AGCCCACGACCTAGGGCGGGCTCCCGGTTCACGCTTTCCCCGCTGCCTCGCCGACAGCCTCGGC
CCTTCAGGCCCAATTTTTCTGCACGTCCCTGGGTGGAGGTGCGCCCTGGCCTCGCAGCAGCCTC
CCGGCCACCCCAGGTCAGCTTCCGGACCGGCGCAGGCTGCCCTCCGAGCGCGTCCCCGGTCAGC
AGTCAGCAGGCGTCCCCTCCGCCCGGCCCGGCCAGCCCAGCTCAGGAGGGACGAAGGCAAGGAC
GACACTCCCCGGCCACCATTCATTTCCCCACTGGTCTCCTCAGCTCTGCAGATTGAAGTGAGTG
AATTCAGATATAATTCAAGCTTGTTAGAGCGCTTTAAAAAAATACAAAGTTGATTCGTTGCTTG
AGAGCAAGTTAACTACTGCTGCTTACCGGTGAGAGACTTACAGGTGCTTGCCTGAATTGCAATA
AAGGACTCATATATTGAGCAAGACTTATTTATCTCTTCATTTTGGAGAGCCTCATAAACTGTTA
TTACAGTTTCTCTACTGACTTTGAAAAGTTTGAAAGAGACACCTGTGCAGCTAAGAAAGCATGA
GCACGGCCAGGACAGAGAACCCTGTTATCATGGGTCTGTCCAGTCAGAACGGCCAGCTGAGGGG
CCCTGTGAAGGCCAGTGCCGGCCCTGGAGGAGGGGGCCCACAGACACAGACACAGATGAACCAG
TTGAAGAACACCAGCACAATCAATAATGGCACTCAGCAGCAAGCACAGAGCATGGCCGCCACCA
TTAAACCTGGTGATGACTGGAAAAAGACTTTAAAACTCCCTCCAAAGGATCTAAGAATTAAAAC
TTCGGATGTGACCTCCACAAAAGGAAATGAGTTTGAAGATTACTGTTTGAAACGAGAGTTGCTA
ATGGGAATTTTTGAAATGGGCTGGGAAAAACCATCTCCTATTCAGGAGGAGAGCATTCCCATTG
CTTTATCTGGTAGGGATATCTTAGCTAGAGCAAAAAATGGAACAGGCAAAAGCGGTGCCTACCT
CATCCCCTTACTTGAACGGCTGGACCTGAAGAAGGACAATATTCAAGCAATGGTGATTGTTCCC
ACTAGAGAACTTGCTCTACAGGTCAGTCAAATTTGCATCCAGGTCAGCAAACACATGGGAGGGG
CCAAAGTGATGGCGACCACTGGAGGAACCAATTTACGGGATGACATAATGAGGCTTGACGATAC
AGTGCATGTGGTGATTGCTACCCCTGGCAGAATCCTGGATCTTATCAAGAAAGGAGTAGCAAAG
GTTGATCATGTCCAGATGATAGTATTGGATGAGGCAGATAAGTTGTTGTCACAGGACTTTGTGC
AGATAATGGAGGATATTATTCTCACACTACCTAAAAATAGGCAGATTTTACTATATTCCGCTAC
TTTCCCTCTTAGTGTACAAAAGTTTATGAATTCCCATCTGCAAAAACCCTACGAGATAAACCTG
ATGGAGGAGCTAACTCTGAAAGGGGTGACCCAGTACTACGCATATGTAACGGAGCGCCAAAAAG
TGCACTGCCTCAATACACTCTTCTCCAGGCTTCAGATAAACCAGTCGATCATTTTCTGCAACTC
TTCTCAGAGAGTTGAGTTACTGGCCAAGAAGATTTCTCAGCTGGGTTACTCTTGCTTCTATATC
CATGCTAAAATGAGGCAGGAACATAGAAATCGTGTCTTTCATGATTTCCGAAATGGCTTATGCC
GCAATCTTGTTTGCACTGATCTGTTTACCCGAGGTATTGATATACAAGCTGTGAATGTGGTAAT
AAACTTTGACTTCCCAAAGCTGGCAGAGACCTATCTTCATCGGATTGGAAGGTCAGGTCGCTTT
GGTCATCTTGGCTTAGCCATCAACTTGATCACATATGATGATCGCTTCAACCTGAAGAGTATTG
AGGAGCAGCTGGGGACAGAGATCAAACCCATCCCAAGCAACATTGACAAGAGCCTGTATGTGGC
AGAATACCACAGTGAGCCTGCAGAAGATGAGAAACCTTAACAAGCACGCTTTGACAAACTACAG
AAGGCTCCTTGGATCTGTGACGCATCATTTTTGGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTT
TTCATCTTTATTTTGGAACTATGAAGAGTTATATAAGAGCTCAGACATCTTTCTTTTTTTTAAC
TGGTGAAGAAAAACTGAAAAGAAGAAATGGACCTTTTTTGTTCCCTTGTTTGCACTGTGTGCTG
ACTGAACGTTTCGTTGCACTAACTGCTGGTTTTTAAAAATGTTTTCTGGGGAAAGGGGACAAGG
AAGGAGGAAAAAGAAAGGGAGAAACCCTAAAAAGAGAAGAATCTTGGTGGACACGCACCTGTCT
ACAGTTCTCCGATAGCCGACTCTACTGCATTTCAACTTCTCCCTGGTTACTCATCCGTTTTTAA
GCCTGAAGAGCTTACTACTTATTTGTGCAAAGTGCCTTACGCTACGAGACCATTAAGAATATCA
TCTTTTACCACAGCCCGAGGAATCAACAAAGTCACGTTCTATTTTCTTTTCTTTTTTATTTCTT
TGCCTCTTCATTTGGTTTCAAGTTGAAGTCTTGCTTCCTGTTCTACCAGTACTCATGCCCAGGG
CCGGAAGGTGGACTAGTGATGGTAGCGCCATTTTCCTTTTCTTTATATGGAGGAGTTGATTCAC
AACTGCAGTCCATCCACACTGTAAATACATGTATTTAAAAAAAAAAAACAATACCAAGTAAAAT
TTTCTTCTGGGCTGAGTAGACGCACCATCGTCGCTCCCAAAGGAAAGAGCAGCCTCTCACTGCA
GGAGCCATATGACAAGCCTCTGTGCTCTACGGCGGAACACTAACCTGGCTCACACGCTTCCATG
AGCAGTAAGGCACTGGGTGCAAAGACTTGTCGGAGCCTTGACCCTCTTTCCTCTGTGGCAAAGC
GCGACCCATAGAAAATTGTATGTGTATACTTGTATAAACTTTGTAAATAAGTTTTTTTCTGGGT
TCATATATATATATATATAAATATATATATATACATACATATATATATTATTTTTTTTGGATGA
AGGTTGCTGGGATTAAGGGATTAGAGTGATTATGGGAGCAGCTAAAGATGAGAGGGGCTCAGTT
TTCTGCAACACTAAATTCTAAAAAGTGCTTTGGCCTCTAACTATAGGAAGTAGACCTCTGCAGG
GCCTGTGTTGGAAAAGGGCCCAGAAGCCCAGGGCGCCTGTGCGCCACCACACTACTCTTGTAAT
GTGCATGCAGCGGTCTTAGCAGACAGCAAGGAAGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTC
GAGAAGCTCTGTGGTTTGGCTCTCCTGTCCTAAACGTTTGAGGAACTTCCCAAGTTCCTCAAAG
GGGAACAAAGATTAATCTTCCTTGGAGTATGAGAAGTGTACGGAGTGCAGTCTTAGAGCAGAGA
GTGTGAACATGGATTCGTACTTCACTGGACCAGCCAGTACAGCCTCAGCAGGCTTGGCGGTCGT
GGAGCTTAGTTATCTGCGGTCACCTCCTGTAGTGTGTGAGTGAACGAAAGCCCTCTGCCCACCT
TGACTTGTACATGTTTGCGGGAATGGGCGACCCCTGAGAGCTGTTAACTCCATGCTGCAGAAAG
CTGCTTACCATTCTCGTGCCTGCCGCAGCAAGAATTGCTGTCTGTCCTTTCTTTCGCATTGTAA
ATTGCCGGCAGATGCTTTAGGTGGGTAGTGTTGCTTTAAATTGTGCCCCTCCCAACATGCTTGA
TGTTTGGCCTGATCTCCAGGCAAAAGGAGTGAGATGAATCAAAACCAGTGAACTTTTTTTTAAA
AAAATGTTTTTAATTCCCTTTTAACCCAGTATACTAGGTCAGGAGGCATCTAGGGAACAAAAAA
AGCAAAAAACAAAATTTAAAAAAAAAACTGATTTTCATATTCCATCACTTTGAAAACCTTAAAC
CTATGACAAGGTATGTCACGTGTACGCTGCCATGCTTAACTCACCTGAATAAAGGAGTCCGCTA
TTCCAAGTTGCTTTTTGACTGTGCCTAGTTCTAAAGCAAAACTATTTGTGACCTGTCCCAAATT
CCTTGGGGATCAAAATCCTAAAGATGCCTCCTTACCAGATATAACCCTGACTGTAACAGCTGTA
GCAGGAGCTGCACGGTACAAAACCCCAAAAGGCAAGTCCAGTCAGTGTTGGTTACAAAACAGAA
ACCAAATTAAGGAAGTCACTTTTTTAGGGAGGGTGGGAATGGGGTCTTAAAAATTCTTTGACCA
ACAGATCTTGCCCTTGTACCGATGCAGTTCTCCTCCTTCCTGCCTTTGGCGAGATGAGAGGGAT
CTCCATGTAGATCAGCAGCAGGAACGGAGTATAAACAAACGTGCTAGCTCGCCAGAGGACATGT
GGGTGAGTCAACAAGGTGCAGTCTCTTGCCAACCTTGGACTGCTCTGCTAGGTGCCACATGCCT
ATGAGTCCCTCTTAAAGCACAGACTCCACGTGGAGAGTATTCTCAAGTACAGCGTCTGCTGAGC
TGTGGCACTTGGACTAGCTGAGCACCCCACTGTCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAG
CTCGCTTGAGCTGTTAATGGAAAGATGCCCTACTGACCAGGTCAGAACCTGGTTATCTTTTTTT
TTTTTTTTTTTTCTTTTTTTCCTTTTTAATCCCTCTTAATAAGGAATATTGCTACTATTGGAAA
TTGTCTTTCAGGTTCTTTCCAGTAATTTTTAAAGTAATGGTTATGTTTTGTTTTTTCCCAGTAG
TTCATTTGGATAAAAACTATGTCCTATTTTTAATATCCACCTCAATGCTTTTAGCCTCTGGTCA
TAAGCTGTGTAATGAGTCACAGACTGTTACACACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTC
TCCCTTAATGTTCTGAACATGAAAAAACTTTCTTAGAAATGGAATACATTTACCATAAAATGTT
TTCCCTGAAAAGGAAAACCTAAGTAATTCTAAATTATTTCCAAATGGGTATCAGCATCATAACA
ATTGGTTGGCCCAAAATGGTGGGGTGGGGTGGGTGGTTGTCATAACTCGTTTTCAGAATGAGAT
GAGGGCATCTTTCCTTGGCCACCTGCTTTGTGGTTGGACACCATTGTGCTCAGTTAGAGCAGAG
CACAGCACAAAGCTTTGAAAAGTGTTGGAAACAAAACATCTCATTCTGATCATTTGTTTGTTGT
TTTTTTTGTTTGTTTTTTGTTTTGTTTTGTTTTTTTTTTAATATGGGTGGGAGGGGAGGGTACT
GTGTCCCAAAAGGGAGGGTGTCTGCACTAAGGATTTAGAAACACTTTGGAAGCTCATAGCCTCA
TGGGAAACTGCCTTTAGCCACACTCCTGACCTTTAGATGAGTAACAAAAAGATGGAATGAGTTT
GTGGGAATTAAGCCATGTTATTTTAATTGGATACTTTTTTTTTTCAACTTTCTGTGTATCTTTA
AAATTGTTACTGTGGAATGATTTTCTTGCCAAATATCTTTGTCAGGCAAAATTATTGGCCTCAA
GGGAGGTGAAGTAAGCCAGATTTTGGGTGAATTTATGTGGACTTTGGTGAGTTTGTAGTTCTAC
TTTATATTCATAAAGATAGTTTTTTAAAACTCCCAAAGCAAATCTATTTTCTTCTCTAATGTAA
AAACTCATCTTTGGAGGAAAGAGTTAAGTGTCCAAGGGTTGTAACAGATATGAGGTCAGAGGGA
GCTCGCCTGGCCTGGACGCTGCCCCTCCACAGCTGACAGACTCCAACAGAAGTGTATTTAAATC
TCCAGTGGACAGAGCTGGGCAGGGCAAGGGAGGGTGGGCCTGGGTTAGTGAGATGCAGGCTGCT
GTATTTTAACCAGTGGTTCTTGGGGAGGGGTGCCTGGAGAATACAAAGTCACTTCCCTTTTTTG
AAACAAAACCAATTAGAAAAAAACTACAATTTTTTTGTTTAGTAAAAATAAGAAAATTCTAATG
TCCCTAGTCACAAGGGACCAGTTCCACTTTGAACAGTAGGAACTTAAAAATTTGAAAACATTTG
GGGAAAGGGAAAATTGGCTTTCTGTTTAATTGGCAAATGTTCCAGTGGGAGGGTCTGTTTTTGT
TGGGATGTGTTACAGTATATGTACATGTCTATGGACCTGAGTCTTTAAGGAATTTATACATGGT
TCAGAAAAGATGGTTGGTAAAATCTTGATTATTTCTTTTTGTTAATTTATCTCAATAAAAGCCC
ACTGGAACTCCAA

hide sequence

RefSeq Acc Id:

XM_017595834 ⟹ XP_017451323

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,932,308 - 44,967,773 (+)	NCBI
Rnor_6.0	8	48,925,798 - 48,961,394 (+)	NCBI

Sequence:

show sequence

CCGGGAGGACGGGCGGGTGGCCGCTGAGAGGAGCAGCGGCGGCGGCGGAGAGGAGTGGAACCGA
GGAATGTGGTGTGTGCCCGGTCTGGAGGAGGAGCGGTGGAGTGCTCTGGGCGAGCGGTGTGGTA
GACGGGAGCGGGGACGGAGCGGCGGCCGGGACTCCGGAGTGAGGTTGGGAGTGCGAGGCAGCCC
TGTTGGGGGCGGCAGGGCTGTGCTGTCCGGAGACTGGGCTAGGAGAGGACCCGCAGCTGCTCGG
TTGCAAGTAGGCCTTGCAGATTGAAGTGAGTGAATTCAGATATAATTCAAGCTTGTTAGAGCGC
TTTAAAAAAATACAAAGTTGATTCGTTGCTTGAGAGCAAGTTAACTACTGCTGCTTACCGGTGA
GAGACTTACAGGTGCTTGCCTGAATTGCAATAAAGGACTCATATATTGAGCAAGACTTATTTAT
CTCTTCATTTTGGAGAGCCTCATAAACTGTTATTACAGTTTCTCTACTGACTTTGAAAAGTTTG
AAAGAGACACCTGTGCAGCTAAGAAAGCATGAGCACGGCCAGGACAGAGAACCCTGTTATCATG
GGTCTGTCCAGTCAGAACGGCCAGCTGAGGGGCCCTGTGAAGGCCAGTGCCGGCCCTGGAGGAG
GGGGCCCACAGACACAGACACAGATGAACCAGTTGAAGAACACCAGCACAATCAATAATGGCAC
TCAGCAGCAAGCACAGAGCATGGCCGCCACCATTAAACCTGGTGATGACTGGAAAAAGACTTTA
AAACTCCCTCCAAAGGATCTAAGAATTAAAACTTCGGATGTGACCTCCACAAAAGGAAATGAGT
TTGAAGATTACTGTTTGAAACGAGAGTTGCTAATGGGAATTTTTGAAATGGGCTGGGAAAAACC
ATCTCCTATTCAGGAGGAGAGCATTCCCATTGCTTTATCTGGTAGGGATATCTTAGCTAGAGCA
AAAAATGGAACAGGCAAAAGCGGTGCCTACCTCATCCCCTTACTTGAACGGCTGGACCTGAAGA
AGGACAATATTCAAGCAATGGTGATTGTTCCCACTAGAGAACTTGCTCTACAGGTCAGTCAAAT
TTGCATCCAGGTCAGCAAACACATGGGAGGGGCCAAAGTGATGGCGACCACTGGAGGAACCAAT
TTACGGGATGACATAATGAGGCTTGACGATACAGTGCATGTGGTGATTGCTACCCCTGGCAGAA
TCCTGGATCTTATCAAGAAAGGAGTAGCAAAGGTTGATCATGTCCAGATGATAGTATTGGATGA
GGCAGATAAGTTGTTGTCACAGGACTTTGTGCAGATAATGGAGGATATTATTCTCACACTACCT
AAAAATAGGCAGATTTTACTATATTCCGCTACTTTCCCTCTTAGTGTACAAAAGTTTATGAATT
CCCATCTGCAAAAACCCTACGAGATAAACCTGATGGAGGAGCTAACTCTGAAAGGGGTGACCCA
GTACTACGCATATGTAACGGAGCGCCAAAAAGTGCACTGCCTCAATACACTCTTCTCCAGGCTT
CAGATAAACCAGTCGATCATTTTCTGCAACTCTTCTCAGAGAGTTGAGTTACTGGCCAAGAAGA
TTTCTCAGCTGGGTTACTCTTGCTTCTATATCCATGCTAAAATGAGGCAGGAACATAGAAATCG
TGTCTTTCATGATTTCCGAAATGGCTTATGCCGCAATCTTGTTTGCACTGATCTGTTTACCCGA
GGTATTGATATACAAGCTGTGAATGTGGTAATAAACTTTGACTTCCCAAAGCTGGCAGAGACCT
ATCTTCATCGGATTGGAAGGTCAGGTCGCTTTGGTCATCTTGGCTTAGCCATCAACTTGATCAC
ATATGATGATCGCTTCAACCTGAAGAGTATTGAGGAGCAGCTGGGGACAGAGATCAAACCCATC
CCAAGCAACATTGACAAGAGCCTGTATGTGGCAGAATACCACAGTGAGCCTGCAGAAGATGAGA
AACCTTAACAAGCACGCTTTGACAAACTACAGAAGGCTCCTTGGATCTGTGACGCATCATTTTT
GGGGCGGGGGGTGCTCTTCTCCTTGTGGGTTTTTCATCTTTATTTTGGAACTATGAAGAGTTAT
ATAAGAGCTCAGACATCTTTCTTTTTTTTAACTGGTGAAGAAAAACTGAAAAGAAGAAATGGAC
CTTTTTTGTTCCCTTGTTTGCACTGTGTGCTGACTGAACGTTTCGTTGCACTAACTGCTGGTTT
TTAAAAATGTTTTCTGGGGAAAGGGGACAAGGAAGGAGGAAAAAGAAAGGGAGAAACCCTAAAA
AGAGAAGAATCTTGGTGGACACGCACCTGTCTACAGTTCTCCGATAGCCGACTCTACTGCATTT
CAACTTCTCCCTGGTTACTCATCCGTTTTTAAGCCTGAAGAGCTTACTACTTATTTGTGCAAAG
TGCCTTACGCTACGAGACCATTAAGAATATCATCTTTTACCACAGCCCGAGGAATCAACAAAGT
CACGTTCTATTTTCTTTTCTTTTTTATTTCTTTGCCTCTTCATTTGGTTTCAAGTTGAAGTCTT
GCTTCCTGTTCTACCAGTACTCATGCCCAGGGCCGGAAGGTGGACTAGTGATGGTAGCGCCATT
TTCCTTTTCTTTATATGGAGGAGTTGATTCACAACTGCAGTCCATCCACACTGTAAATACATGT
ATTTAAAAAAAAAAAACAATACCAAGTAAAATTTTCTTCTGGGCTGAGTAGACGCACCATCGTC
GCTCCCAAAGGAAAGAGCAGCCTCTCACTGCAGGAGCCATATGACAAGCCTCTGTGCTCTACGG
CGGAACACTAACCTGGCTCACACGCTTCCATGAGCAGTAAGGCACTGGGTGCAAAGACTTGTCG
GAGCCTTGACCCTCTTTCCTCTGTGGCAAAGCGCGACCCATAGAAAATTGTATGTGTATACTTG
TATAAACTTTGTAAATAAGTTTTTTTCTGGGTTCATATATATATATATATAAATATATATATAT
ACATACATATATATATTATTTTTTTTGGATGAAGGTTGCTGGGATTAAGGGATTAGAGTGATTA
TGGGAGCAGCTAAAGATGAGAGGGGCTCAGTTTTCTGCAACACTAAATTCTAAAAAGTGCTTTG
GCCTCTAACTATAGGAAGTAGACCTCTGCAGGGCCTGTGTTGGAAAAGGGCCCAGAAGCCCAGG
GCGCCTGTGCGCCACCACACTACTCTTGTAATGTGCATGCAGCGGTCTTAGCAGACAGCAAGGA
AGCTTCAGAAGTCTGTGGTCCCTGAGGGCTTCGAGAAGCTCTGTGGTTTGGCTCTCCTGTCCTA
AACGTTTGAGGAACTTCCCAAGTTCCTCAAAGGGGAACAAAGATTAATCTTCCTTGGAGTATGA
GAAGTGTACGGAGTGCAGTCTTAGAGCAGAGAGTGTGAACATGGATTCGTACTTCACTGGACCA
GCCAGTACAGCCTCAGCAGGCTTGGCGGTCGTGGAGCTTAGTTATCTGCGGTCACCTCCTGTAG
TGTGTGAGTGAACGAAAGCCCTCTGCCCACCTTGACTTGTACATGTTTGCGGGAATGGGCGACC
CCTGAGAGCTGTTAACTCCATGCTGCAGAAAGCTGCTTACCATTCTCGTGCCTGCCGCAGCAAG
AATTGCTGTCTGTCCTTTCTTTCGCATTGTAAATTGCCGGCAGATGCTTTAGGTGGGTAGTGTT
GCTTTAAATTGTGCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGGAGTGA
GATGAATCAAAACCAGTGAACTTTTTTTTAAAAAAATGTTTTTAATTCCCTTTTAACCCAGTAT
ACTAGGTCAGGAGGCATCTAGGGAACAAAAAAAGCAAAAAACAAAATTTAAAAAAAAAACTGAT
TTTCATATTCCATCACTTTGAAAACCTTAAACCTATGACAAGGTATGTCACGTGTACGCTGCCA
TGCTTAACTCACCTGAATAAAGGAGTCCGCTATTCCAAGTTGCTTTTTGACTGTGCCTAGTTCT
AAAGCAAAACTATTTGTGACCTGTCCCAAATTCCTTGGGGATCAAAATCCTAAAGATGCCTCCT
TACCAGATATAACCCTGACTGTAACAGCTGTAGCAGGAGCTGCACGGTACAAAACCCCAAAAGG
CAAGTCCAGTCAGTGTTGGTTACAAAACAGAAACCAAATTAAGGAAGTCACTTTTTTAGGGAGG
GTGGGAATGGGGTCTTAAAAATTCTTTGACCAACAGATCTTGCCCTTGTACCGATGCAGTTCTC
CTCCTTCCTGCCTTTGGCGAGATGAGAGGGATCTCCATGTAGATCAGCAGCAGGAACGGAGTAT
AAACAAACGTGCTAGCTCGCCAGAGGACATGTGGGTGAGTCAACAAGGTGCAGTCTCTTGCCAA
CCTTGGACTGCTCTGCTAGGTGCCACATGCCTATGAGTCCCTCTTAAAGCACAGACTCCACGTG
GAGAGTATTCTCAAGTACAGCGTCTGCTGAGCTGTGGCACTTGGACTAGCTGAGCACCCCACTG
TCTGGAGAGGCAGCAGTGGGGGTGGTGCTTAGCTCGCTTGAGCTGTTAATGGAAAGATGCCCTA
CTGACCAGGTCAGAACCTGGTTATCTTTTTTTTTTTTTTTTTTTCTTTTTTTCCTTTTTAATCC
CTCTTAATAAGGAATATTGCTACTATTGGAAATTGTCTTTCAGGTTCTTTCCAGTAATTTTTAA
AGTAATGGTTATGTTTTGTTTTTTCCCAGTAGTTCATTTGGATAAAAACTATGTCCTATTTTTA
ATATCCACCTCAATGCTTTTAGCCTCTGGTCATAAGCTGTGTAATGAGTCACAGACTGTTACAC
ACCTTGCTGCCTCAGGGCCTGTTTTTTTTCTCTCCCTTAATGTTCTGAACATGAAAAAACTTTC
TTAGAAATGGAATACATTTACCATAAAATGTTTTCCCTGAAAAGGAAAACCTAAGTAATTCTAA
ATTATTTCCAAATGGGTATCAGCATCATAACAATTGGTTGGCCCAAAATGGTGGGGTGGGGTGG
GTGGTTGTCATAACTCGTTTTCAGAATGAGATGAGGGCATCTTTCCTTGGCCACCTGCTTTGTG
GTTGGACACCATTGTGCTCAGTTAGAGCAGAGCACAGCACAAAGCTTTGAAAAGTGTTGGAAAC
AAAACATCTCATTCTGATCATTTGTTTGTTGTTTTTTTTGTTTGTTTTTTGTTTTGTTTTGTTT
TTTTTTTAATATGGGTGGGAGGGGAGGGTACTGTGTCCCAAAAGGGAGGGTGTCTGCACTAAGG
ATTTAGAAACACTTTGGAAGCTCATAGCCTCATGGGAAACTGCCTTTAGCCACACTCCTGACCT
TTAGATGAGTAACAAAAAGATGGAATGAGTTTGTGGGAATTAAGCCATGTTATTTTAATTGGAT
ACTTTTTTTTTTCAACTTTCTGTGTATCTTTAAAATTGTTACTGTGGAATGATTTTCTTGCCAA
ATATCTTTGTCAGGCAAAATTATTGGCCTCAAGGGAGGTGAAGTAAGCCAGATTTTGGGTGAAT
TTATGTGGACTTTGGTGAGTTTGTAGTTCTACTTTATATTCATAAAGATAGTTTTTTAAAACTC
CCAAAGCAAATCTATTTTCTTCTCTAATGTAAAAACTCATCTTTGGAGGAAAGAGTTAAGTGTC
CAAGGGTTGTAACAGATATGAGGTCAGAGGGAGCTCGCCTGGCCTGGACGCTGCCCCTCCACAG
CTGACAGACTCCAACAGAAGTGTATTTAAATCTCCAGTGGACAGAGCTGGGCAGGGCAAGGGAG
GGTGGGCCTGGGTTAGTGAGATGCAGGCTGCTGTATTTTAACCAGTGGTTCTTGGGGAGGGGTG
CCTGGAGAATACAAAGTCACTTCCCTTTTTTGAAACAAAACCAATTAGAAAAAAACTACAATTT
TTTTGTTTAGTAAAAATAAGAAAATTCTAATGTCCCTAGTCACAAGGGACCAGTTCCACTTTGA
ACAGTAGGAACTTAAAAATTTGAAAACATTTGGGGAAAGGGAAAATTGGCTTTCTGTTTAATTG
GCAAATGTTCCAGTGGGAGGGTCTGTTTTTGTTGGGATGTGTTACAGTATATGTACATGTCTAT
GGACCTGAGTCTTTAAGGAATTTATACATGGTTCAGAAAAGATGGTTGGTAAAATCTTGATTAT
TTCTTTTTGTTAATTTATCTCAATAAAAGCCCACTGGAACTCCAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102762	(Get FASTA)	NCBI Sequence Viewer
	XP_006243012	(Get FASTA)	NCBI Sequence Viewer
	XP_006243013	(Get FASTA)	NCBI Sequence Viewer
	XP_006243014	(Get FASTA)	NCBI Sequence Viewer
	XP_006243016	(Get FASTA)	NCBI Sequence Viewer
	XP_017451323	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95329	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001102762 ⟸ NM_001109292

- UniProtKB:

D3ZD73 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA
TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG
GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF
VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ
KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL
CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS
IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP

hide sequence

RefSeq Acc Id:	XP_006243016 ⟸ XM_006242954
- Peptide Label:	isoform X1
- UniProtKB:	D3ZD73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP hide sequence

RefSeq Acc Id:	XP_006243013 ⟸ XM_006242951
- Peptide Label:	isoform X1
- UniProtKB:	D3ZD73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP hide sequence

RefSeq Acc Id:	XP_006243012 ⟸ XM_006242950
- Peptide Label:	isoform X1
- UniProtKB:	D3ZD73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP hide sequence

RefSeq Acc Id:	XP_006243014 ⟸ XM_006242952
- Peptide Label:	isoform X1
- UniProtKB:	D3ZD73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP hide sequence

RefSeq Acc Id:	XP_017451323 ⟸ XM_017595834
- Peptide Label:	isoform X1
- UniProtKB:	D3ZD73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQSMAA TIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP IALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQ KVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGL CRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKS IEEQLGTEIKPIPSNIDKSLYVAEYHSEPAEDEKP hide sequence

RefSeq Acc Id:

ENSRNOP00000073900 ⟸ ENSRNOT00000077445

Protein Domains

Helicase ATP-binding Helicase C-terminal Q_MOTIF

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695899

Promoter ID:

EPDNEW_R6422

Type:

initiation region

Name:

Ddx6_1

Description:

DEAD-box helicase 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	48,925,604 - 48,925,664	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

Visual

CSV

TAB

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564560	AgrOrtholog
Ensembl Genes	ENSRNOG00000053932	Ensembl, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000073900	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077445	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	DEAD-like_N	UniProtKB/TrEMBL
	DNA/RNA_helicase_C	UniProtKB/TrEMBL
	DNA/RNA_helicase_DEAD/DEAH_N	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	RNA-helicase_DEAD-box_CS	UniProtKB/TrEMBL
	RNA_helicase_DEAD_Q_motif	UniProtKB/TrEMBL
KEGG Report	rno:500988	UniProtKB/TrEMBL
NCBI Gene	500988	ENTREZGENE
Pfam	DEAD	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
PhenoGen	Ddx6	PhenoGen
PROSITE	DEAD_ATP_HELICASE	UniProtKB/TrEMBL
	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
	Q_MOTIF	UniProtKB/TrEMBL
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	D3ZD73	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-13	Ddx6	DEAD-box helicase 6	Ddx6	DEAD (Asp-Glu-Ala-Asp) box helicase 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-16	Ddx6	DEAD (Asp-Glu-Ala-Asp) box helicase 6	Ddx6	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-05-27	Ddx6	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	RGD1564560	similar to RCK	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1564560	similar to RCK	RGD1564560_predicted	similar to RCK (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564560_predicted	similar to RCK (predicted)	LOC500988	similar to RCK	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500988	similar to RCK			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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