Barx2 (BARX homeobox 2) - Rat Genome Database

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Gene: Barx2 (BARX homeobox 2) Rattus norvegicus
Analyze
Symbol: Barx2
Name: BARX homeobox 2
RGD ID: 1584840
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including cartilage condensation; regulation of transcription by RNA polymerase II; and skeletal muscle cell differentiation. Predicted to be located in several cellular components, including Golgi apparatus; actin cytoskeleton; and nucleoplasm. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human BARX2 (BARX homeobox 2); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; indole-3-methanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BarH-like homeobox 2; BARX homeobox 2, pseudogene 1; Barx2-ps1; homeobox protein BarH-like 2; LOC679701; similar to BarH-like homeobox 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8838,509,277 - 38,576,978 (-)NCBIGRCr8
mRatBN7.2830,251,132 - 30,319,105 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl830,251,132 - 30,319,013 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0832,950,878 - 33,018,245 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl832,950,875 - 33,017,854 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0832,973,711 - 33,040,595 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4831,572,341 - 31,659,306 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera831,710,513 - 31,778,220 (-)NCBICelera
Cytogenetic Map8q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Barx2Ratchromosome 11 partial duplication syndrome  ISOBARX2 (Homo sapiens)8554872ClinVar Annotator: match by term: Distal trisomy 11qClinVarPMID:25741868
Barx2RatDwarfism  ISOBARX2 (Homo sapiens)8554872ClinVar Annotator: match by term: Short statureClinVarPMID:32581362
Barx2RatJacobsen Syndrome  ISOBARX2 (Homo sapiens)8554872ClinVar Annotator: match by term: Paris-Trousseau thrombocytopeniaClinVarPMID:32581362
Barx2Ratschizophrenia  ISOBARX2 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311

1 to 20 of 55 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Barx2Rat1,2-dimethylhydrazine decreases expressionISOBarx2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of BARX2 mRNACTDPMID:22206623
Barx2Rat17beta-estradiol decreases expressionISOBarx2 (Mus musculus)6480464Estradiol results in decreased expression of BARX2 mRNACTDPMID:19484750
Barx2Rat17beta-estradiol multiple interactionsISOBARX2 (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of BARX2 mRNACTDPMID:30165855
Barx2Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOBarx2 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Barx2Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOBarx2 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Barx2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOBarx2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of BARX2 mRNACTDPMID:21570461 and PMID:24058054
Barx2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOBarx2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of BARX2 mRNACTDPMID:37172768
Barx2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOBARX2 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of BARX2 mRNACTDPMID:21296121 and PMID:21998131
Barx2Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOBarx2 (Mus musculus)64804642 more ...CTDPMID:38648751
Barx2Rat4,4'-diaminodiphenylmethane increases expressionISOBarx2 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of BARX2 mRNACTDPMID:18648102
Barx2Rat4,4'-sulfonyldiphenol increases expressionISOBarx2 (Mus musculus)6480464bisphenol S results in increased expression of BARX2 mRNACTDPMID:30951980
Barx2Rat5-fluorouracil increases expressionISOBARX2 (Homo sapiens)6480464Fluorouracil results in increased expression of BARX2 proteinCTDPMID:15585135 and PMID:16803524
Barx2Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of BARX2 mRNACTDPMID:30047161
Barx2Rataflatoxin B1 increases methylationISOBARX2 (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of BARX2 intronCTDPMID:30157460
Barx2Rataldehydo-D-glucose multiple interactionsISOBarx2 (Mus musculus)6480464[lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose co-treated with Herbicides] results in increased expression of BARX2 mRNACTDPMID:37567420
Barx2Ratamitrole decreases expressionEXP 6480464Amitrole results in decreased expression of BARX2 mRNACTDPMID:30047161
Barx2Ratantimonite multiple interactionsISOBARX2 (Homo sapiens)6480464[Antimony Potassium Tartrate results in increased abundance of antimonite] which results in decreased expression of BARX2 mRNACTDPMID:32076005
Barx2Ratarsenite(3-) multiple interactionsISOBARX2 (Homo sapiens)6480464[sodium arsenite results in increased abundance of arsenite] which results in decreased expression of BARX2 mRNACTDPMID:32076005
Barx2Ratatrazine increases expressionISOBARX2 (Homo sapiens)6480464Atrazine results in increased expression of BARX2 mRNACTDPMID:22378314
Barx2Ratbenzo[a]pyrene increases methylationISOBarx2 (Mus musculus)6480464Benzo(a)pyrene results in increased methylation of BARX2 intronCTDPMID:27901495

1 to 20 of 55 rows

Biological Process
1 to 16 of 16 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Barx2Ratcartilage condensation acts_upstream_of_or_withinIEAUniProtKB:O08686 and ensembl:ENSMUSP000001123141600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2Ratcartilage condensation acts_upstream_of_or_withinISOBarx2 (Mus musculus)1624291 PMID:15800003RGDPMID:15800003
Barx2Ratmyotube differentiation acts_upstream_of_or_withinISOBarx2 (Mus musculus)1624291 PMID:12486129RGDPMID:12486129
Barx2Ratmyotube differentiation acts_upstream_of_or_withinIEAUniProtKB:O08686 and ensembl:ENSMUSP000001123141600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2Ratnegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinISOBarx2 (Mus musculus)1624291 PMID:15728386RGDPMID:15728386
Barx2Ratnegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinIEAUniProtKB:O08686 and ensembl:ENSMUSP000001123141600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2Ratpositive regulation of transcription by RNA polymerase II involved_inISOBARX2 (Homo sapiens)1624291 PMID:14744868RGDPMID:14744868
Barx2Ratpositive regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:Q9UMQ3 and ensembl:ENSP000002814371600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2Ratpositive regulation of transcription by RNA polymerase II acts_upstream_of_or_withinISOBarx2 (Mus musculus)1624291 PMID:15800003RGDPMID:15800003
Barx2Ratpositive regulation of transcription by RNA polymerase II acts_upstream_of_or_withinIEAUniProtKB:O08686 and ensembl:ENSMUSP000001123141600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2Ratregulation of DNA-templated transcription involved_inIEAInterPro:IPR0179701600115GO_REF:0000002InterProGO_REF:0000002
Barx2Ratregulation of transcription by RNA polymerase II involved_inIBAFB:FBgn0004854 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Barx2Ratskeletal muscle cell differentiation acts_upstream_of_or_withinISOBarx2 (Mus musculus)1624291 PMID:12486129RGDPMID:12486129
Barx2Ratskeletal muscle cell differentiation acts_upstream_of_or_withinIEAUniProtKB:O08686 and ensembl:ENSMUSP000001123141600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2Rattranscription by RNA polymerase II acts_upstream_ofISOBarx2 (Mus musculus)1624291 PMID:15800003RGDPMID:15800003
Barx2Rattranscription by RNA polymerase II acts_upstream_ofIEAUniProtKB:O08686 and ensembl:ENSMUSP000001123141600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 16 of 16 rows

Cellular Component
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Barx2Ratactin cytoskeleton located_inIEAUniProtKB:Q9UMQ3 and ensembl:ENSP000002814371600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2Ratactin cytoskeleton located_inISOBARX2 (Homo sapiens)1624291 RGDGO_REF:0000052
Barx2Ratcytosol located_inIEAUniProtKB:Q9UMQ3 and ensembl:ENSP000002814371600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2Ratcytosol located_inISOBARX2 (Homo sapiens)1624291 RGDGO_REF:0000052
Barx2RatGolgi apparatus located_inISOBARX2 (Homo sapiens)1624291 RGDGO_REF:0000052
Barx2RatGolgi apparatus located_inIEAUniProtKB:Q9UMQ3 and ensembl:ENSP000002814371600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2Ratnucleoplasm located_inIEAUniProtKB:Q9UMQ3 and ensembl:ENSP000002814371600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2Ratnucleoplasm located_inISOBARX2 (Homo sapiens)1624291 RGDGO_REF:0000052
Barx2Ratnucleus located_inIEAUniRule:UR0004010371600115GO_REF:0000104UniProtGO_REF:0000104
Barx2Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
Barx2Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Barx2Ratnucleus is_active_inIBAFB:FBgn0011758 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Barx2Rattranscription regulator complex part_ofISOBarx2 (Mus musculus)1624291 PMID:15728386RGDPMID:15728386
Barx2Rattranscription regulator complex part_ofIEAUniProtKB:O08686 and ensembl:ENSMUSP000001123141600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 14 of 14 rows

Molecular Function
1 to 20 of 24 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Barx2Ratchromatin binding enablesIEAUniProtKB:O08686 and ensembl:ENSMUSP000001123141600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2Ratchromatin binding enablesISOBarx2 (Mus musculus)1624291 PMID:15728386 and PMID:15800003RGDPMID:15728386 and PMID:15800003
Barx2RatDNA binding enablesISOBARX2 (Homo sapiens)1624291 PMID:10854790RGDPMID:10854790
Barx2RatDNA binding enablesIEAUniProtKB:Q9UMQ3 and ensembl:ENSP000002814371600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2RatDNA binding enablesIEAUniRule:UR0004010371600115GO_REF:0000104UniProtGO_REF:0000104
Barx2RatDNA binding enablesIEAUniProtKB:O08686 and ensembl:ENSMUSP000001123141600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2RatDNA binding enablesIEAInterPro:IPR000047 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Barx2RatDNA binding enablesISOBarx2 (Mus musculus)1624291MGI:106658 PMID:11278942 and PMID:15728386RGDPMID:11278942 and PMID:15728386
Barx2RatDNA binding enablesIEAUniProtKB-KW:KW-0238 and UniProtKB-KW:KW-03711600115GO_REF:0000043UniProtGO_REF:0000043
Barx2RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesISOBARX2 (Homo sapiens)1624291 PMID:14744868RGDPMID:14744868
Barx2RatDNA-binding transcription activator activity, RNA polymerase II-specific enablesIEAUniProtKB:Q9UMQ3 and ensembl:ENSP000002814371600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2RatDNA-binding transcription factor activity enablesISOBarx2 (Mus musculus)1624291 PMID:15800003RGDPMID:15800003
Barx2RatDNA-binding transcription factor activity enablesIEAUniProtKB:O08686 and ensembl:ENSMUSP000001123141600115GO_REF:0000107EnsemblGO_REF:0000107
Barx2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesIBAFB:FBgn0004854 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Barx2RatDNA-binding transcription factor activity, RNA polymerase II-specific enablesIEAInterPro:IPR0179701600115GO_REF:0000002InterProGO_REF:0000002
Barx2Ratprotein binding enablesISOBARX2 (Homo sapiens)1624291UniProtKB:Q13643 more ...RGDPMID:32296183
Barx2Ratprotein binding enablesISOBarx2 (Mus musculus)1624291PR:Q62440 more ...RGDPMID:11278942 and PMID:15728386
Barx2RatRNA polymerase II transcription regulatory region sequence-specific DNA binding enablesISOBARX2 (Homo sapiens)1624291 PMID:14744868RGDPMID:14744868
Barx2RatRNA polymerase II transcription regulatory region sequence-specific DNA binding enablesIBAPANTHER:PTN001551673 and UniProtKB:Q9UMQ31600115GO_REF:0000033GO_CentralGO_REF:0000033
Barx2RatRNA polymerase II transcription regulatory region sequence-specific DNA binding enablesIEAUniProtKB:Q9UMQ3 and ensembl:ENSP000002814371600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 20 of 24 rows


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10854790   PMID:11278942   PMID:12486129   PMID:14744868   PMID:15728386   PMID:15800003  



Barx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8838,509,277 - 38,576,978 (-)NCBIGRCr8
mRatBN7.2830,251,132 - 30,319,105 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl830,251,132 - 30,319,013 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0832,950,878 - 33,018,245 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl832,950,875 - 33,017,854 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0832,973,711 - 33,040,595 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4831,572,341 - 31,659,306 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera831,710,513 - 31,778,220 (-)NCBICelera
Cytogenetic Map8q21NCBI
BARX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811129,375,233 - 129,452,279 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11129,375,848 - 129,452,279 (+)EnsemblGRCh38hg38GRCh38
GRCh3711129,245,743 - 129,322,174 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611128,751,091 - 128,827,384 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411128,751,044 - 128,827,025NCBI
Celera11126,414,612 - 126,490,903 (+)NCBICelera
Cytogenetic Map11q24.3NCBI
HuRef11125,197,559 - 125,273,843 (+)NCBIHuRef
CHM1_111129,131,929 - 129,208,237 (+)NCBICHM1_1
T2T-CHM13v2.011129,410,744 - 129,487,778 (+)NCBIT2T-CHM13v2.0
Barx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39931,757,340 - 31,824,581 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl931,757,340 - 31,824,758 (-)EnsemblGRCm39 Ensembl
GRCm38931,846,044 - 31,913,285 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl931,846,044 - 31,913,462 (-)EnsemblGRCm38mm10GRCm38
MGSCv37931,653,629 - 31,720,870 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36931,595,845 - 31,662,638 (-)NCBIMGSCv36mm8
Celera929,106,200 - 29,173,253 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map917.25NCBI
Barx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541230,345,311 - 30,418,232 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541230,345,837 - 30,418,186 (+)NCBIChiLan1.0ChiLan1.0
BARX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29130,053,913 - 130,134,590 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111131,161,438 - 131,242,079 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011124,187,026 - 124,264,154 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111128,086,441 - 128,162,833 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11128,086,409 - 128,162,833 (+)Ensemblpanpan1.1panPan2
BARX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.155,238,795 - 5,311,027 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl55,239,517 - 5,310,648 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha55,298,474 - 5,372,031 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.055,196,807 - 5,270,452 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl55,197,533 - 5,271,156 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.155,258,336 - 5,331,876 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.055,240,819 - 5,314,348 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.055,268,897 - 5,342,390 (-)NCBIUU_Cfam_GSD_1.0
Barx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947111,533,573 - 111,603,814 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365722,846,551 - 2,916,842 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365722,846,862 - 2,916,842 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BARX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl956,261,658 - 56,340,983 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1956,261,394 - 56,340,992 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2962,541,342 - 62,620,933 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BARX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11120,510,271 - 120,587,689 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1120,572,074 - 120,588,039 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660435,501,279 - 5,576,472 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Barx2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248123,720,303 - 3,802,701 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248123,720,302 - 3,802,630 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Barx2
366 total Variants

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:54
Interacting mature miRNAs:56
Transcripts:ENSRNOT00000011386
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 36 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)82824291253961020Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat

1 to 10 of 36 rows
RH132744  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2830,319,129 - 30,319,346 (+)MAPPERmRatBN7.2
Rnor_6.0833,018,305 - 33,018,521NCBIRnor6.0
Rnor_5.0833,040,886 - 33,041,102UniSTSRnor5.0
RGSC_v3.4831,640,232 - 31,640,448UniSTSRGSC3.4
Celera831,778,280 - 31,778,496UniSTS
Cytogenetic Map8q13UniSTS
RH132855  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8838,518,026 - 38,518,864 (+)Marker Load Pipeline
mRatBN7.2830,259,883 - 30,260,721 (+)MAPPERmRatBN7.2
Rnor_6.0832,959,338 - 32,960,175NCBIRnor6.0
Rnor_5.0832,982,168 - 32,983,005UniSTSRnor5.0
RGSC_v3.4831,580,336 - 31,581,173UniSTSRGSC3.4
Celera831,718,982 - 31,719,819UniSTS
RH 3.4 Map8249.4UniSTS
Cytogenetic Map8q13UniSTS
BM387908  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2830,316,779 - 30,316,956 (+)MAPPERmRatBN7.2
Rnor_6.0833,015,955 - 33,016,131NCBIRnor6.0
Rnor_5.0833,038,536 - 33,038,712UniSTSRnor5.0
RGSC_v3.4831,637,882 - 31,638,058UniSTSRGSC3.4
Celera831,775,930 - 31,776,106UniSTS
RH 3.4 Map8250.0UniSTS
Cytogenetic Map8q13UniSTS
SHGC-152003  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2830,307,718 - 30,308,306 (+)MAPPERmRatBN7.2
Rnor_6.0833,006,896 - 33,007,483NCBIRnor6.0
Rnor_5.0833,029,477 - 33,030,064UniSTSRnor5.0
RGSC_v3.4831,628,823 - 31,629,410UniSTSRGSC3.4
Cytogenetic Map8q13UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 21 100 39 50 19 16 19 6 129 48 92 45 59 31


RefSeq Transcripts NM_001427453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003754397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000011386   ⟹   ENSRNOP00000011386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl830,251,132 - 30,319,013 (-)Ensembl
Rnor_6.0 Ensembl832,950,875 - 33,017,854 (-)Ensembl
RefSeq Acc Id: NM_001427453   ⟹   NP_001414382
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8838,509,277 - 38,576,978 (-)NCBI
Protein RefSeqs NP_001414382 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011386
  ENSRNOP00000011386.6
Ensembl Acc Id: ENSRNOP00000011386   ⟸   ENSRNOT00000011386
RefSeq Acc Id: NP_001414382   ⟸   NM_001427453
- UniProtKB: D4A7E7 (UniProtKB/TrEMBL),   A6JYG7 (UniProtKB/TrEMBL)
Homeobox

Name Modeler Protein Id AA Range Protein Structure
AF-D4A7E7-F1-model_v2 AlphaFold D4A7E7 1-290 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695830
Promoter ID:EPDNEW_R6354
Type:single initiation site
Name:Barx2_1
Description:BARX homeobox 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0833,017,825 - 33,017,885EPDNEW


1 to 25 of 25 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-31251 BioCyc
Ensembl Genes ENSRNOG00000008592 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011386 ENTREZGENE
  ENSRNOT00000011386.8 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_eu UniProtKB/TrEMBL
  Homeobox_TF UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  HTH_lambrepressr UniProtKB/TrEMBL
NCBI Gene 679701 ENTREZGENE
PANTHER BARX HOMEOBOX 2 UniProtKB/TrEMBL
  HOMEO BOX HB9 LIKE A-RELATED UniProtKB/TrEMBL
Pfam Homeobox UniProtKB/TrEMBL
PhenoGen Barx2 PhenoGen
PRINTS HOMEOBOX UniProtKB/TrEMBL
  HTHREPRESSR UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008592 RatGTEx
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
UniProt A6JYG7 ENTREZGENE, UniProtKB/TrEMBL
  D4A7E7 ENTREZGENE, UniProtKB/TrEMBL
1 to 25 of 25 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-05 Barx2  BARX homeobox 2  Barx2-ps1  BARX homeobox 2, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-07 Barx2-ps1  BARX homeobox 2, pseudogene 1  Barx2  BARX homeobox 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Barx2  BARX homeobox 2  Barx2  BarH-like homeobox 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Barx2  BarH-like homeobox 2  LOC679701  similar to BarH-like homeobox 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC679701  similar to BarH-like homeobox 2  LOC679497  similar to BarH-like homeobox 2  Data merged from RGD:1588269 1643240 APPROVED
2006-11-19 LOC679701  similar to BarH-like homeobox 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679497  similar to BarH-like homeobox 2      Symbol and Name status set to provisional 70820 PROVISIONAL