Rplp1 (ribosomal protein lateral stalk subunit P1) - Rat Genome Database

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Gene: Rplp1 (ribosomal protein lateral stalk subunit P1) Rattus norvegicus
Analyze
Symbol: Rplp1 (Ensembl: LOC100360522)
Name: ribosomal protein lateral stalk subunit P1 (Ensembl:ribosomal protein P1-like)
RGD ID: 621774
Description: Enables ribonucleoprotein complex binding activity. Involved in cellular response to Thyroid stimulating hormone; cellular response to cAMP; and positive regulation of translation. Part of cytosolic large ribosomal subunit. Orthologous to human RPLP1 (ribosomal protein lateral stalk subunit P1); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S acidic ribosomal protein P1; large ribosomal subunit protein P1; MGC72935; ribosomal protein, large, P1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8871,289,539 - 71,290,872 (-)NCBIGRCr8
mRatBN7.2862,394,008 - 62,395,341 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl862,393,177 - 62,395,339 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx867,908,441 - 67,909,773 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0866,180,953 - 66,182,285 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0864,050,881 - 64,052,213 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0866,862,143 - 66,863,476 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl866,862,143 - 66,863,476 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0866,594,524 - 66,595,857 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4866,046,220 - 66,047,553 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1866,065,272 - 66,066,576 (-)NCBI
Celera861,813,792 - 61,815,125 (-)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rplp1RatBloom syndrome  ISORPLP1 (Homo sapiens)8554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
Rplp1Ratcolorectal cancer  ISORPLP1 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rplp1Rat(1->4)-beta-D-glucan multiple interactionsISORplp1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of RPLP1 mRNACTDPMID:36331819
Rplp1Rat1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactionsISORplp1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Rplp1Rat1,2-dimethylhydrazine multiple interactionsISORplp1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of RPLP1 mRNACTDPMID:22206623
Rplp1Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISORplp1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Rplp1Rat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISORplp1 (Mus musculus)64804642 more ...CTDPMID:30294300
Rplp1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISORPLP1 (Homo sapiens)64804642 more ...CTDPMID:31675489
Rplp1Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISORplp1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Rplp1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORplp1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of RPLP1 mRNACTDPMID:21570461
Rplp1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of RPLP1 mRNACTDPMID:33387578
Rplp1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of RPLP1 mRNACTDPMID:34747641
Rplp1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISORPLP1 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of RPLP1 mRNACTDPMID:21807756
Rplp1Rat2,4,4'-trichlorobiphenyl multiple interactionsISORplp1 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Rplp1Rat2,4,6-tribromophenol decreases expressionISORPLP1 (Homo sapiens)64804642 more ...CTDPMID:31675489
Rplp1Rat2,6-dimethoxyphenol multiple interactionsISORPLP1 (Homo sapiens)6480464[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in decreased expression of RPLP1 proteinCTDPMID:38598786
Rplp1Rat2-hydroxypropanoic acid increases expressionISORPLP1 (Homo sapiens)6480464Lactic Acid results in increased expression of RPLP1 mRNACTDPMID:30851411
Rplp1Rat3-chloropropane-1,2-diol increases expressionEXP 6480464alpha-Chlorohydrin results in increased expression of RPLP1 proteinCTDPMID:34915118
Rplp1Rat4,4'-diaminodiphenylmethane decreases expressionISORplp1 (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of RPLP1 mRNACTDPMID:18648102
Rplp1Rat4,4'-sulfonyldiphenol affects expressionISORplp1 (Mus musculus)6480464bisphenol S affects the expression of RPLP1 mRNACTDPMID:39298647
Rplp1Rat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of RPLP1 mRNACTDPMID:36041667
Rplp1Ratacetamide decreases expressionEXP 6480464acetamide results in decreased expression of RPLP1 mRNACTDPMID:31881176

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Biological Process
1 to 20 of 31 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rplp1Ratauditory behavior involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratcellular response to cAMP  IEP 11039466 RGD 
Rplp1Ratcellular response to Thyroid stimulating hormone  IEP 11039466 RGD 
Rplp1Ratcochlea development involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratcochlea morphogenesis involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratcraniofacial suture morphogenesis involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratcytoplasmic translation involved_inIBAPANTHER:PTN000474938 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Rplp1Ratgenitalia development involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratgenitalia morphogenesis involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Rathard palate morphogenesis involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Rathematopoietic progenitor cell differentiation acts_upstream_of_or_withinIEAUniProtKB:Q8JZM6 and ensembl:ENSMUSP000001311621600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratinner ear development involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratinner ear morphogenesis involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratlearned vocalization behavior involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratlipopolysaccharide-mediated signaling pathway acts_upstream_of_or_withinIEAUniProtKB:Q8JZM6 and ensembl:ENSMUSP000001311621600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratmastication involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratmyeloid cell differentiation acts_upstream_of_or_withinIEAUniProtKB:Q8JZM6 and ensembl:ENSMUSP000001311621600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratnegative regulation of relaxation of muscle involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratnegative regulation of saliva secretion involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
Rplp1Ratneuromuscular process controlling balance involved_inIEAUniProtKB:Q6ZNK6 and ensembl:ENSP000004405091600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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1 to 11 of 11 rows

Molecular Function

  

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rplp1Ratribosome biogenesis pathway   ISORPLP1 (Homo sapiens)10002762 RGD 
Rplp1Rattranslation pathway   ISORPLP1 (Homo sapiens)10002762 RGD 

1 to 12 of 12 rows
#
Reference Title
Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Thyrotropin stimulates the expression of an acidic ribosomal protein, P0, messenger ribonucleic acid in cultured rat thyroid (FRTL) cells. Ikeda M, etal., Endocrinology. 1991 May;128(5):2540-7.
5. The primary structure of the acidic phosphoprotein P2 from rat liver 60 S ribosomal subunits. Comparison with ribosomal 'A' proteins from other species. Lin A, etal., J Biol Chem. 1982 Aug 10;257(15):9189-97.
6. Landscape of the hnRNP K protein-protein interactome. Mikula M, etal., Proteomics. 2006 Apr;6(8):2395-406.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. A specific role for the phosphorylation of mammalian acidic ribosomal protein P2. Vard C, etal., J Biol Chem. 1997 Aug 8;272(32):20259-62.
12. The primary structure of rat ribosomal proteins P0, P1, and P2 and a proposal for a uniform nomenclature for mammalian and yeast ribosomal proteins. Wool IG, etal., Biochimie 1991 Jul-Aug;73(7-8):861-70.
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PMID:3323886   PMID:12477932   PMID:12962325   PMID:15489334   PMID:21423176   PMID:23106098   PMID:23376485   PMID:24625528   PMID:24959908   PMID:25002582   PMID:35352799  



Rplp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8871,289,539 - 71,290,872 (-)NCBIGRCr8
mRatBN7.2862,394,008 - 62,395,341 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl862,393,177 - 62,395,339 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx867,908,441 - 67,909,773 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0866,180,953 - 66,182,285 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0864,050,881 - 64,052,213 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0866,862,143 - 66,863,476 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl866,862,143 - 66,863,476 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0866,594,524 - 66,595,857 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4866,046,220 - 66,047,553 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1866,065,272 - 66,066,576 (-)NCBI
Celera861,813,792 - 61,815,125 (-)NCBICelera
Cytogenetic Map8q24NCBI
RPLP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381569,452,818 - 69,456,205 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1569,452,814 - 69,456,205 (+)EnsemblGRCh38hg38GRCh38
GRCh371569,745,157 - 69,748,544 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361567,532,213 - 67,534,938 (+)NCBINCBI36Build 36hg18NCBI36
Build 341567,532,212 - 67,534,938NCBI
Celera1546,633,950 - 46,636,675 (+)NCBICelera
Cytogenetic Map15q23NCBI
HuRef1546,578,122 - 46,580,847 (+)NCBIHuRef
CHM1_11569,863,129 - 69,865,854 (+)NCBICHM1_1
T2T-CHM13v2.01567,274,899 - 67,278,285 (+)NCBIT2T-CHM13v2.0
Rplp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39961,820,565 - 61,821,792 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl961,820,566 - 61,821,824 (-)EnsemblGRCm39 Ensembl
GRCm38961,913,283 - 61,914,510 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl961,913,284 - 61,914,542 (-)EnsemblGRCm38mm10GRCm38
MGSCv37961,761,090 - 61,762,317 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36961,711,289 - 61,712,516 (-)NCBIMGSCv36mm8
Celera959,135,851 - 59,137,078 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map933.5NCBI
Rplp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554507,053,378 - 7,055,858 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554507,053,378 - 7,055,858 (-)NCBIChiLan1.0ChiLan1.0
RPLP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21658,717,382 - 58,720,048 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11562,881,235 - 62,884,112 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01548,403,415 - 48,406,149 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11567,173,833 - 67,176,570 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1567,173,832 - 67,176,570 (+)Ensemblpanpan1.1panPan2
RPLP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13033,342,099 - 33,346,541 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3033,277,907 - 33,280,870 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03033,543,714 - 33,546,678 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3033,491,545 - 33,546,709 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13033,469,120 - 33,472,087 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03033,530,796 - 33,533,761 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03033,778,695 - 33,781,669 (+)NCBIUU_Cfam_GSD_1.0
Rplp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640111,334,702 - 111,336,687 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647129,182,729 - 29,186,737 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647129,182,772 - 29,184,750 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPLP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1167,296,094 - 167,298,263 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11167,296,084 - 167,298,264 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21185,384,984 - 185,387,171 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPLP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12614,002,074 - 14,004,481 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2614,002,075 - 14,004,474 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048127,478,852 - 127,481,262 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rplp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247814,037,824 - 4,045,248 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247814,042,041 - 4,044,613 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Rplp1
4 total Variants

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:91
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000018820
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 55 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat

1 to 10 of 55 rows
RPLP1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2178,431,994 - 8,432,082 (+)MAPPERmRatBN7.2
mRatBN7.2862,395,183 - 62,395,271 (+)MAPPERmRatBN7.2
Rnor_6.0866,863,319 - 66,863,406NCBIRnor6.0
Rnor_6.0179,234,720 - 9,234,807NCBIRnor6.0
Rnor_5.01711,393,529 - 11,393,616UniSTSRnor5.0
Rnor_5.0866,595,700 - 66,595,787UniSTSRnor5.0
RGSC_v3.4866,047,396 - 66,047,483UniSTSRGSC3.4
RGSC_v3.41714,407,913 - 14,408,000UniSTSRGSC3.4
Celera178,516,311 - 8,516,398UniSTS
Celera861,814,968 - 61,815,055UniSTS
Cytogenetic Map17p14UniSTS
Cytogenetic Map8q24UniSTS
PMC156124P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXq31UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map18q12.1UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 30 of 97 rows
RefSeq Transcripts NM_001007604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 97 rows

Ensembl Acc Id: ENSRNOT00000018820   ⟹   ENSRNOP00000018820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl862,393,177 - 62,395,339 (-)Ensembl
RefSeq Acc Id: NM_001007604   ⟹   NP_001007605
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8871,289,539 - 71,290,872 (-)NCBI
mRatBN7.2862,394,008 - 62,395,341 (-)NCBI
Rnor_6.0866,862,143 - 66,863,476 (-)NCBI
Rnor_5.0866,594,524 - 66,595,857 (-)NCBI
RGSC_v3.4866,046,220 - 66,047,553 (-)RGD
Celera861,813,792 - 61,815,125 (-)RGD
Sequence:
Protein RefSeqs NP_001007605 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58151 (Get FASTA)   NCBI Sequence Viewer  
  EDL95740 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018820.2
  ENSRNOP00000087435.1
  ENSRNOP00000092643.1
  ENSRNOP00000101776
GenBank Protein P19944 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001007605   ⟸   NM_001007604
- UniProtKB: P19944 (UniProtKB/Swiss-Prot),   A6J567 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018820   ⟸   ENSRNOT00000018820

Name Modeler Protein Id AA Range Protein Structure
AF-P19944-F1-model_v2 AlphaFold P19944 1-114 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696048
Promoter ID:EPDNEW_R6573
Type:multiple initiation site
Name:LOC100360522_1
Description:ribosomal protein P1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0866,863,475 - 66,863,535EPDNEW


1 to 24 of 24 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-30181 BioCyc
Ensembl Genes ENSRNOG00000013874 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000054840 ENTREZGENE
  ENSRNOG00000063015 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000018820.6 UniProtKB/Swiss-Prot
  ENSRNOT00000077213 ENTREZGENE
  ENSRNOT00000107660.1 UniProtKB/Swiss-Prot
  ENSRNOT00000111700.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.1410 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6888011 IMAGE-MGC_LOAD
InterPro P1/P2_N_sf UniProtKB/Swiss-Prot
  Ribosomal_L12 UniProtKB/Swiss-Prot
KEGG Report rno:140661 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72935 IMAGE-MGC_LOAD
NCBI Gene 140661 ENTREZGENE
PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 UniProtKB/Swiss-Prot
  LARGE RIBOSOMAL SUBUNIT PROTEIN P1 UniProtKB/Swiss-Prot
Pfam Ribosomal_60s UniProtKB/Swiss-Prot
PhenoGen Rplp1 PhenoGen
RatGTEx ENSRNOG00000013874 RatGTEx
  ENSRNOG00000054840 RatGTEx
  ENSRNOG00000063015 RatGTEx
UniProt A6J567 ENTREZGENE, UniProtKB/TrEMBL
  P19944 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 24 of 24 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-15 Rplp1  ribosomal protein lateral stalk subunit P1  Rplp1  ribosomal protein, large, P1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-26 Rplp1  ribosomal protein, large, P1      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rplp1  ribosomal protein, large, P1      Symbol and Name status set to provisional 70820 PROVISIONAL