Glb1l3 (galactosidase, beta 1-like 3)

Advanced Search (OLGA)

Gene: Glb1l3 (galactosidase, beta 1-like 3) Rattus norvegicus

Analyze

Symbol:

Glb1l3

Name:

galactosidase, beta 1-like 3

RGD ID:

1561462

Description:

Predicted to enable beta-galactosidase activity. Predicted to be involved in galactose catabolic process. Predicted to be active in vacuole. Orthologous to human GLB1L3 (galactosidase beta 1 like 3); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

beta-galactosidase-1-like protein 3; galactosidase, beta 1 like 3; LOC500961; similar to hypothetical protein BC008326

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GLB1L3 (galactosidase beta 1 like 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Glb1l3 (galactosidase, beta 1 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GLB1L3 (galactosidase beta 1 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GLB1L3 (galactosidase beta 1 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GLB1L3 (galactosidase beta 1 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GLB1L3 (galactosidase beta 1 like 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GLB1L2 (galactosidase beta 1 like 2)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Glb1l3 (galactosidase, beta 1 like 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GLB1L3 (galactosidase beta 1 like 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-224e22.2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	glb1l2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	33,454,914 - 33,496,641 (-)	NCBI		GRCr8
mRatBN7.2	8	25,179,165 - 25,220,904 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	25,179,165 - 25,220,904 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	29,237,730 - 29,279,461 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	27,532,023 - 27,573,752 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	25,395,446 - 25,437,166 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	27,865,452 - 27,907,726 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	27,865,350 - 27,907,911 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	27,885,459 - 27,927,733 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	26,448,446 - 26,490,267 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	26,737,742 - 26,779,469 (-)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 11 partial duplication syndrome (ISO)

Jacobsen Syndrome (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2-hydroxypropanoic acid (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

antirheumatic drug (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

carbon nanotube (ISO)

chlordecone (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

entinostat (ISO)

fonofos (ISO)

niclosamide (ISO)

ozone (ISO)

parathion (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

terbufos (ISO)

testosterone (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

galactose catabolic process (IBA)

Cellular Component

vacuole (IBA)

Molecular Function

beta-galactosidase activity (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334

Genomics

Comparative Map Data

Glb1l3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	33,454,914 - 33,496,641 (-)	NCBI		GRCr8
mRatBN7.2	8	25,179,165 - 25,220,904 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	25,179,165 - 25,220,904 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	29,237,730 - 29,279,461 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	27,532,023 - 27,573,752 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	25,395,446 - 25,437,166 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	27,865,452 - 27,907,726 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	27,865,350 - 27,907,911 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	27,885,459 - 27,927,733 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	26,448,446 - 26,490,267 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	26,737,742 - 26,779,469 (-)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

GLB1L3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	134,275,767 - 134,325,304 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	134,274,245 - 134,319,564 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	134,146,273 - 134,189,458 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	133,652,266 - 133,694,667 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	131,319,141 - 131,362,133 (+)	NCBI		Celera
Cytogenetic Map	11	q25	NCBI
HuRef	11	130,101,037 - 130,144,384 (+)	NCBI		HuRef
CHM1_1	11	134,033,014 - 134,076,147 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	134,314,651 - 134,366,918 (+)	NCBI		T2T-CHM13v2.0

Glb1l3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	26,729,249 - 26,773,394 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	26,729,249 - 26,772,186 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	26,817,953 - 26,862,099 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	26,817,953 - 26,860,890 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	26,625,538 - 26,668,408 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	26,567,399 - 26,610,336 (-)	NCBI		MGSCv36	mm8
Celera	9	24,077,263 - 24,119,785 (-)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	11.67	NCBI

GLB1L3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	134,998,067 - 135,044,186 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	136,097,272 - 136,143,364 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	129,126,472 - 129,172,535 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	132,985,554 - 133,029,890 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	132,987,384 - 133,029,890 (+)	Ensembl	panpan1.1		panPan2

GLB1L3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	805,531 - 846,125 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	805,653 - 846,126 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	925,741 - 967,403 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	760,724 - 802,389 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	5	793,717 - 835,155 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	795,014 - 836,740 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	832,260 - 874,005 (-)	NCBI		UU_Cfam_GSD_1.0

GLB1L3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	60,918,345 - 60,940,093 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	60,917,137 - 60,940,461 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	67,540,330 - 67,560,798 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GLB1L3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	125,359,514 - 125,400,427 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	125,360,454 - 125,400,409 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	647,520 - 688,581 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Glb1l3
84 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	25
Count of miRNA genes:	24
Interacting mature miRNAs:	25
Transcripts:	ENSRNOT00000010045
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
2317882	Alcrsp24	Alcohol response QTL 24	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	8	1	25902202	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
5	4	35	72	66	65	35	20	35	3	133	71	55	18	56	30

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010045 ⟹ ENSRNOP00000010045

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	25,179,165 - 25,220,904 (-)	Ensembl
Rnor_6.0 Ensembl	8	27,865,350 - 27,907,911 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118955 ⟹ ENSRNOP00000091712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	25,179,165 - 25,220,904 (-)	Ensembl

RefSeq Acc Id:

NM_001024358 ⟹ NP_001019529

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,454,914 - 33,496,641 (-)	NCBI
mRatBN7.2	8	25,179,165 - 25,220,904 (-)	NCBI
Rnor_6.0	8	27,865,452 - 27,907,726 (-)	NCBI
Rnor_5.0	8	27,885,459 - 27,927,733 (-)	NCBI
RGSC_v3.4	8	26,448,446 - 26,490,267 (-)	RGD
Celera	8	26,737,742 - 26,779,469 (-)	RGD

Sequence:

show sequence

CTGCACTGCATCGGGCCTGACTAGAGATCGTGTGTCTGAGGCACCCGAGAGAGCAGGATCTGCA
AGGACCTTCGCATCCCTGGCTTCCAGAGATGGCATACCTAAGCAAGCATTGTTCCTGGAAGAGA
ATCATGGCCATCTTCTTCCTGCCACTAGTCTTACCAGGTTTTGCTCCTCGCTCAGAGGACTCAT
TTAAGTCTCCTGCCAGGTTCAGTTGGTCTTATCTGAACCCCTCCAAGCTGAAAAAGAGATCTGT
AGGACTTAGCACTGAAACCAATGCTCACGGCCAAGCATACTTCACCCTGGAAGGCCACAAATTC
ATGATAGTTGGAGGCTCCATACACTACTTCCGGGTGCCCAGGGAGTATTGGAAAGACCGCTTGC
TGAAGCTCCAGGCCTGTGGATTTAACACTGTCACTACCTACATCCCGTGGAACCTCCATGAGCA
AGAGAGGGGGAAATTTGACTTCTCTGAGATCCTGGACTTGGAGGCATATGTTTTGCTGGCTAAG
ACTCTTGGACTGTGGGTGATTCTTCGTCCAGGGCCATACATCTGTGCTGAGGTTGACTTGGGTG
GATTACCTAGCTGGCTTCTACGCAATCCTGGGTCAAATCTGAGAACAACCAACAAGGACTTTAT
TGAAGCTGTTGATAAATATTTTGATCATCTGATTCCCAAAATACTTCCTCTTCAGTACCGCCGT
GGTGGCCCTGTTATTGCTGTCCAAGTAGAGAATGAATATGGTTCATTTCGAAATGATAAGAACT
ACATGGAGTACATTAAGAAGGCTCTGCTGAATAGAGGGATTGTAGAGCTCCTCTTGACCTCAGA
TAATGAGAGTGGAATTCGGATCGGCTCTGTCAAAGGAGCATTGGCTACTATCAATGTGAACTCA
TTTATAAAGGATTCGTTTGTTAAGCTTCATAGAATGCAGAATGATAAGCCTATTATGATTATGG
AATACTGGACTGGCTGGTATGACTCGTGGGGGAGTAAACACACTGAGAAAAGTGCAAATGAAAT
TCGACGCACAATATATAGATTCTTCAGCTATGGACTCTCCTTCAACGTGTATATGTTCCACGGT
GGAACCAACTTTGGTTTCATAAATGGAGGCTATCATGAAAATGGTCACACGAATGTTGTGACTA
GCTATGACTATGATGCTGTGCTTTCCGAGGCTGGTGATTACACAGAAAAGTATTTCAAGCTTCG
GAAACTCTTTGCATCTGGATCAGCACGTCCTCTACCGCCATTGCCTCGTCTTATTCCCAAGGCT
GTCTATCCCTCTGTGAATCTATCATTCTACCTGCCACTGTTTGATATCCTACCATACTTAAATA
AGCCTGTCATGTTAGAAACTCCAGTCACCATGGAGAATCTTCCAATAAACAATGGCAGTGGTCA
GCCATTTGGATTGGTCCTTTATGAGACGTCCATCTGTTTTGGAGGCGGTCTCTCTGCTTCAGTC
CACGATTCGGCACAGGTGTTTTTGAATGACAAAAGCATAGGAATTCTGGATGAGAATAATGAGT
TCCTGCATATTCCTAAAATCCAGGGTTGTCAGCTTCTGAGGATCCTGGTTGAGAATCAAGGCCG
AATCAATTTCTCATGGAGAATTCAAAGTGAGCAGAAAGGATTAAATGAAGCAGTTACCATCAAT
GGTACTTTGCTGAGGAATTTCACCATCTATTCTCTGGACATGAAGATGAGCTTCTTCGAGAGGC
TCCGCTCTGCATCATGGAGAATTGCTCCAAAAACTTATAAAGGCCCTGCCTTCTACTGGGGAAG
TTTGAACGTTGGCTCTTTTCCCACGGACACCTTCCTGCACCTACCAAATTGGCATTATGGGTTT
GTGTTCATCAACGGACGAAATCTTGGAAGATATTGGGACATTGGGCCTCAGAAAACACTGTACC
TTCCTGGTCCCTGGCTTCATCCAGAAGACAACGATGTCATCGTGTTTGAGAAGATAGAGAAGGG
ATTTTACATCCAGACGAGAAAGAAACCCCAGTTGCAAAATTAATTCTACAAAACAGATTCTGAA
TTGTCAGAGGGTTCTGATGGTTCTTTTGAATGTTGATCACTGCTAAGAATATTGCAAATAGTGC
TGCTGACAGAAAAACATGAAAATAACCAAAATACCCAGAGAAATTGGGTATTTCCATTTAATTA
CTAATTTTAGGCTATAAACTTCAAAATCTTTAGTAGACAAATTTATCTAGTTAAATGCTTAATT
CTTAGTAGGTTCTTATTCTCTGTCAAGATATGCCTTTAGAAAGAAAATAAAAACAAATTTAACT
TCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001019529	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83665	(Get FASTA)	NCBI Sequence Viewer
	EDL83349	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010045.4
	ENSRNOP00000091712.1
GenBank Protein	Q5XIL5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001019529 ⟸ NM_001024358
- Peptide Label:	precursor
- UniProtKB:	Q5XIL5 (UniProtKB/Swiss-Prot), F1LQ73 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAYLSKHCSWKRIMAIFFLPLVLPGFAPRSEDSFKSPARFSWSYLNPSKLKKRSVGLSTETNAH GQAYFTLEGHKFMIVGGSIHYFRVPREYWKDRLLKLQACGFNTVTTYIPWNLHEQERGKFDFSE ILDLEAYVLLAKTLGLWVILRPGPYICAEVDLGGLPSWLLRNPGSNLRTTNKDFIEAVDKYFDH LIPKILPLQYRRGGPVIAVQVENEYGSFRNDKNYMEYIKKALLNRGIVELLLTSDNESGIRIGS VKGALATINVNSFIKDSFVKLHRMQNDKPIMIMEYWTGWYDSWGSKHTEKSANEIRRTIYRFFS YGLSFNVYMFHGGTNFGFINGGYHENGHTNVVTSYDYDAVLSEAGDYTEKYFKLRKLFASGSAR PLPPLPRLIPKAVYPSVNLSFYLPLFDILPYLNKPVMLETPVTMENLPINNGSGQPFGLVLYET SICFGGGLSASVHDSAQVFLNDKSIGILDENNEFLHIPKIQGCQLLRILVENQGRINFSWRIQS EQKGLNEAVTINGTLLRNFTIYSLDMKMSFFERLRSASWRIAPKTYKGPAFYWGSLNVGSFPTD TFLHLPNWHYGFVFINGRNLGRYWDIGPQKTLYLPGPWLHPEDNDVIVFEKIEKGFYIQTRKKP QLQN hide sequence

Ensembl Acc Id:

ENSRNOP00000010045 ⟸ ENSRNOT00000010045

Ensembl Acc Id:

ENSRNOP00000091712 ⟸ ENSRNOT00000118955

Protein Domains

Beta-galactosidase 1-like first all-beta Beta-galactosidase galactose-binding Glycoside hydrolase 35 catalytic

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIL5-F1-model_v2	AlphaFold	Q5XIL5	1-631	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561462	AgrOrtholog
BioCyc Gene	G2FUF-31311	BioCyc
Ensembl Genes	ENSRNOG00000031469	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010045.6	UniProtKB/TrEMBL
	ENSRNOT00000118955.1	UniProtKB/TrEMBL
Gene3D-CATH	Galactose-binding domain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glycosidases	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7135489	IMAGE-MGC_LOAD
InterPro	B-gal_1-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BetaGal1-like_ABD1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BetaGal_gal-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Galactose-bd-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Gly_Hdrlase_35_cat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glyco_hydro_35_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glycoside_Hdrlase_35	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glycoside_hydrolase_SF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:500961	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:94507	IMAGE-MGC_LOAD
NCBI Gene	500961	ENTREZGENE
PANTHER	BETA-GALACTOSIDASE-1-LIKE PROTEIN 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR23421	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	BetaGal_ABD_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BetaGal_gal-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glyco_hydro_35	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Glb1l3	PhenoGen
PIRSF	B-gal	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	GLHYDRLASE35	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	GLYCOSYL_HYDROL_F35	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000031469	RatGTEx
Superfamily-SCOP	SSF49785	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF51445	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6AGN4_RAT	UniProtKB/TrEMBL
	F1LQ73	ENTREZGENE, UniProtKB/TrEMBL
	GLBL3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Glb1l3	galactosidase, beta 1-like 3	LOC500961	similar to hypothetical protein BC008326	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC500961	similar to hypothetical protein BC008326			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar