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Gene: Cln6 (CLN6, transmembrane ER protein) Rattus norvegicus
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Symbol: Cln6
Name: CLN6, transmembrane ER protein
Description: Predicted to have protein homodimerization activity. Predicted to be involved in several processes, including ganglioside metabolic process; locomotion involved in locomotory behavior; and lysosomal lumen acidification. Predicted to localize to the endoplasmic reticulum lumen and nucleolus. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis; neuronal ceroid lipofuscinosis 4A; and neuronal ceroid lipofuscinosis 6. Orthologous to human CLN6 (CLN6 transmembrane ER protein); INTERACTS WITH 17alpha-ethynylestradiol; dexamethasone; testosterone.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: ceroid-lipofuscinosis neuronal protein 6; ceroid-lipofuscinosis, neuronal 6; ceroid-lipofuscinosis, neuronal 6, late infantile; ceroid-lipofuscinosis, neuronal 6, late infantile, variant; LOC315746
Orthologs:
Homo sapiens (human) : CLN6 (CLN6 transmembrane ER protein)  HGNC  Alliance
Mus musculus (house mouse) : Cln6 (ceroid-lipofuscinosis, neuronal 6)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cln6 (CLN6 transmembrane ER protein)
Pan paniscus (bonobo/pygmy chimpanzee) : CLN6 (CLN6 transmembrane ER protein)
Canis lupus familiaris (dog) : CLN6 (CLN6 transmembrane ER protein)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cln6 (CLN6 transmembrane ER protein)
Sus scrofa (pig) : CLN6 (CLN6 transmembrane ER protein)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0867,733,215 - 67,748,170 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl867,733,215 - 67,748,172 (+)Ensembl
Rnor_5.0867,461,962 - 67,476,917 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4866,987,057 - 67,002,013 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1866,996,226 - 67,037,937 (+)NCBI
Celera862,718,317 - 62,733,273 (+)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Cln6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309714
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.