Usp2 (ubiquitin specific peptidase 2)

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Gene: Usp2 (ubiquitin specific peptidase 2) Rattus norvegicus

Analyze

Symbol:

Usp2

Name:

ubiquitin specific peptidase 2

RGD ID:

621073

Description:

Enables cysteine-type deubiquitinase activity. Involved in negative regulation of skeletal muscle tissue development and positive regulation of skeletal muscle tissue development. Located in centrosome; nucleus; and perinuclear region of cytoplasm. Orthologous to human USP2 (ubiquitin specific peptidase 2); INTERACTS WITH (+)-schisandrin B; 1-benzylpiperazine; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

41 kDa ubiquitin-specific protease; deubiquitinating enzyme 2; MGC93284; ubiquitin carboxyl-terminal hydrolase 2; ubiquitin specific protease 2; ubiquitin thioesterase 2; ubiquitin thiolesterase 2; ubiquitin-specific-processing protease 2; ubiquitin-specific-processing protease testis; UBP-t

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP2 (ubiquitin specific peptidase 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Usp2 (ubiquitin specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Usp2 (ubiquitin specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP2 (ubiquitin specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP2 (ubiquitin specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp2 (ubiquitin specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP2 (ubiquitin specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP2 (ubiquitin specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp2 (ubiquitin specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	USP2 (ubiquitin specific peptidase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp2 (ubiquitin specific peptidase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp2b (ubiquitin specific peptidase 2b)	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	usp2a (ubiquitin specific peptidase 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Usp2	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp2	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	44,411,457 - 44,439,668 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	44,411,607 - 44,438,331 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	49,912,278 - 49,936,574 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	48,190,992 - 48,215,284 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	46,058,574 - 46,082,906 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	48,403,985 - 48,432,525 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,406,260 - 48,430,885 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,020,039 - 47,048,354 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,052,085 - 47,076,321 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	47,060,850 - 47,085,070 (+)	NCBI
Celera	8	44,001,154 - 44,025,278 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

CD3epsilon deficiency (ISO)

Chromosome 11, Partial Trisomy 11q (ISO)

Dwarfism (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

immunodeficiency 17 (ISO)

immunodeficiency 18 (ISO)

immunodeficiency 19 (ISO)

inflammatory bowel disease 28 (ISO)

isolated microphthalmia 5 (ISO)

Muscle Hypotonia (ISO)

RASopathy (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(2,4,5-trichlorophenoxy)acetic acid (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-benzylpiperazine (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

1H-pyrazole (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3,3',5,5'-tetrabromobisphenol A (EXP)

3-hydroxyisovaleric acid (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

Actein (EXP)

aflatoxin B1 (ISO)

aldrin (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

ammonium chloride (EXP)

amphotericin B (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

C60 fullerene (EXP)

cadmium dichloride (ISO)

calcium atom (ISO)

calcium(0) (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

chloroquine (ISO)

chlorpyrifos (EXP,ISO)

choline (ISO)

chrysene (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

cobalt dichloride (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyanocob(III)alamin (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

dibenz[a,h]anthracene (ISO)

dichloroacetic acid (ISO)

dicrotophos (ISO)

diethyl maleate (EXP)

dimethylarsinic acid (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

gallic acid (ISO)

gentamycin (EXP)

glycine betaine (ISO)

glyphosate (EXP)

graphene oxide (ISO)

hypochlorous acid (ISO)

imidacloprid (EXP)

inulin (ISO)

isoprenaline (EXP)

isotretinoin (ISO)

ketamine (EXP)

L-methionine (ISO)

lead(0) (ISO)

leflunomide (EXP)

levofloxacin (EXP)

lipopolysaccharide (ISO)

malathion (ISO)

mercury dichloride (EXP)

metacetamol (ISO)

methotrexate (ISO)

methoxychlor (EXP)

Muraglitazar (EXP)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

nickel sulfate (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenformin (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (EXP)

ritodrine (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

sevoflurane (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

streptozocin (EXP)

succimer (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tamoxifen (ISO)

testosterone enanthate (ISO)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

tributylstannane (ISO)

trichloroethene (EXP)

triclosan (ISO)

triphenyl phosphate (EXP)

troglitazone (EXP)

trovafloxacin (ISO)

valdecoxib (EXP)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

circadian behavior (ISO,ISS)

circadian regulation of gene expression (ISO,ISS)

entrainment of circadian clock by photoperiod (ISO,ISS)

locomotor rhythm (ISO,ISS)

muscle organ development (IEA)

negative regulation of calcium ion transport (ISO)

negative regulation of skeletal muscle tissue development (IDA)

negative regulation of transcription by RNA polymerase II (ISO,ISS)

positive regulation of mitotic cell cycle (ISO,ISS)

positive regulation of skeletal muscle tissue development (IDA)

protein stabilization (ISO,ISS)

proteolysis (IEA)

Cellular Component

cell cortex (ISO)

centrosome (IDA)

cytoplasm (IBA,ISO)

membrane (ISO)

nucleus (IDA,ISO)

perinuclear region of cytoplasm (IDA,IEA,ISO)

Molecular Function

cyclin binding (ISO)

cysteine-type deubiquitinase activity (IEA,IMP,ISO)

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (IPI,ISO)

ubiquitin protein ligase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Divergent N-terminal sequences target an inducible testis deubiquitinating enzyme to distinct subcellular structures.	Lin H, etal., Mol Cell Biol 2000 Sep;20(17):6568-78.
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Antagonistic regulation of myogenesis by two deubiquitinating enzymes, UBP45 and UBP69.	Park KC, etal., Proc Natl Acad Sci U S A 2002 Jul 23;99(15):9733-8.
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Regulation of behavioral circadian rhythms and clock protein PER1 by the deubiquitinating enzyme USP2.	Yang Y, etal., Biol Open. 2012 Aug 15;1(8):789-801. doi: 10.1242/bio.20121990. Epub 2012 Jun 28.

Additional References at PubMed

PMID:12477932	PMID:14535949	PMID:14686789	PMID:17290220	PMID:19838211	PMID:19917254	PMID:24005904	PMID:26756164	PMID:28512203	PMID:29501527	PMID:33314748

Genomics

Comparative Map Data

Usp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	44,411,457 - 44,439,668 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	44,411,607 - 44,438,331 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	49,912,278 - 49,936,574 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	48,190,992 - 48,215,284 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	46,058,574 - 46,082,906 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	48,403,985 - 48,432,525 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	48,406,260 - 48,430,885 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,020,039 - 47,048,354 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,052,085 - 47,076,321 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	47,060,850 - 47,085,070 (+)	NCBI
Celera	8	44,001,154 - 44,025,278 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

USP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	119,355,215 - 119,381,690 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	119,355,215 - 119,381,711 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	119,225,925 - 119,252,400 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	118,732,163 - 118,757,575 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	118,732,754 - 118,740,102	NCBI
Celera	11	116,386,596 - 116,413,112 (-)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	115,167,582 - 115,194,094 (-)	NCBI		HuRef
CHM1_1	11	119,112,501 - 119,139,031 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	119,376,744 - 119,403,221 (-)	NCBI		T2T-CHM13v2.0

Usp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	43,978,318 - 44,006,924 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	43,978,318 - 44,006,924 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	44,067,021 - 44,095,627 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	44,067,021 - 44,095,627 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	43,875,104 - 43,903,710 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	43,818,162 - 43,845,472 (+)	NCBI		MGSCv36	mm8
Celera	9	41,325,008 - 41,353,422 (+)	NCBI		Celera
Cytogenetic Map	9	A5.1	NCBI
cM Map	9	24.53	NCBI

Usp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	20,433,302 - 20,457,493 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	20,435,778 - 20,461,898 (-)	NCBI	ChiLan1.0	ChiLan1.0

USP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	11	121,166,911 - 121,193,613 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	114,196,725 - 114,223,411 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	118,124,350 - 118,150,868 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	118,124,350 - 118,150,868 (-)	Ensembl	panpan1.1		panPan2

USP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	14,525,685 - 14,550,914 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	14,525,797 - 14,549,291 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	14,579,281 - 14,604,451 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	14,469,193 - 14,494,315 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	14,469,306 - 14,494,323 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	14,607,448 - 14,632,620 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	14,511,479 - 14,536,582 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	14,551,610 - 14,576,719 (+)	NCBI		UU_Cfam_GSD_1.0

Usp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	101,362,834 - 101,388,611 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	4,285,819 - 4,307,925 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936542	4,284,243 - 4,310,545 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	46,563,482 - 46,590,392 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	46,563,469 - 46,590,392 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	51,595,416 - 51,622,353 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	110,733,097 - 110,760,119 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	110,734,737 - 110,742,186 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	15,273,873 - 15,301,399 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	14,729,770 - 14,754,991 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624784	14,729,762 - 14,755,982 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Usp2
86 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	154
Count of miRNA genes:	70
Interacting mature miRNAs:	73
Transcripts:	ENSRNOT00000009975, ENSRNOT00000036051
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	26644912	46711092	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	27205715	54998217	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	28242912	53961020	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	29502665	50095447	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	58482492	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	30848154	61290444	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	30848154	61290444	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	30848154	61290444	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	30848154	82460899	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	30848154	82460899	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	30848154	82460899	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	30848154	82460899	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30856404	75856404	Rat
1582222	Epfw2	Epididymal fat weight QTL 2	3.2	0.0005	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	8	31737729	76737729	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	35551938	80551938	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	35582032	80582032	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
737824	Hcar10	Hepatocarcinoma resistance QTL 10	2.9		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	8	40713066	82925667	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	41866876	75097878	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
631216	Stl9	Serum triglyceride level QTL 9	4.71	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	8	41867010	70386132	Rat
5684993	Bmd84	Bone mineral density QTL 84	4.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	8	42692684	50095447	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		39	3	3		3	8	11	17	15	14		8
Low	3	4	54	38	19	38			57	20	27	11
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF106658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF106659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF202453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF202454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000009975 ⟹ ENSRNOP00000009975

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	44,411,607 - 44,438,331 (+)	Ensembl
Rnor_6.0 Ensembl	8	48,406,260 - 48,430,885 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000036051 ⟹ ENSRNOP00000030257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	44,429,249 - 44,438,297 (+)	Ensembl
Rnor_6.0 Ensembl	8	48,422,036 - 48,430,797 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104911 ⟹ ENSRNOP00000078529

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	44,414,023 - 44,438,297 (+)	Ensembl

RefSeq Acc Id:

NM_053774 ⟹ NP_446226

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,414,023 - 44,438,339 (+)	NCBI
Rnor_6.0	8	48,406,595 - 48,430,901 (+)	NCBI
Rnor_5.0	8	47,020,039 - 47,048,354 (+)	NCBI
RGSC_v3.4	8	47,052,085 - 47,076,321 (+)	RGD
Celera	8	44,001,154 - 44,025,278 (+)	RGD

Sequence:

show sequence

CTCCAGCTTCTAGACTCTACAACAGCCGTCTTTTTCCCTGCGAGAAAGAAGCCCCCCAGATCCC
CATCCAGTGCCCCCGGACACAGCCCATGAGGCTCCCAGTACCCACTGAGTACCACCCTGAAGGA
TGTCCCAGCTCTCCTCCACCCTGAAGCGCTATACAGAATCGTCCCGCTACACAGATGCCCCTTA
TGCCAAATCGGGCTATGGCACCTACACCCCTTCTTCCTATGGGGCCAACCTGGCCGCCTCCTTC
CTGGAGAAGGAAAAACTTGGTTTCAAGCCGGTCTCCCCCACCAGCTTCCTCCCACGGCCCCGCA
CCTACGGCCCCTCCTCCATCCTGGACTGTGACAGGGGCCGCCCCCTGCTGAGATCTGACATCAC
TGGGGGTAGTAAGCGGTCTGAGAGCCAGACCCGTGGCAATGAAAGGCCCTCAGGCAGTGGACTC
AACGGAGGCAGTGGATTTCCTTATGGAGTGACCAGCAACTCCCTCAGCTACCTGCCCATGAATG
CCAGAGACCAGGGCGTGACCTTGGGCCAGAAGAAATCGAACAGCCAATCAGACCTGGCCCGGGA
TTTCTCCAGCCTCCGGACCTCAGATAGCTACAGGACTTCAGATGGCTACCGGGCCTCAGATGGC
TTTAGGATAGACCCCGGAAACCTGGGTCGCAGCCCCATGCTGGCCCGCACACGTAAGGAGCTCT
GTGCCCTGCAGGGCCTCTACCAAGCAACCAGCCGTTCTGAGTACCTAACAGACTATCTGGAGAA
CTATGGCCGCAAGGGCAGTGCACCACAGGTGCTCACACAGGCCCCTCCCTCCCGAGTCCCCGAA
GTCCTCAGTCCCACCTACCGACCAAGTGGCCGCTACACACTGTGGGAGAAGAACAAGGGCCAGG
CTTCTGGGCCCAGCCGCTCCACTTCTCCAGGGCGAGACACCATGAATTCAAAGAGTGCCCAGGG
TCTGGCTGGTCTTCGAAACCTTGGGAACACGTGCTTCATGAACTCAATTCTTCAGTGTCTGAGC
AACACCCGCGAGTTGAGAGATTACTGCCTCCAGAGGCTGTACATGCGGGACCTCGGCCATACCA
GCAGTGCACACACAGCTCTCATGGAAGAGTTTGCAAAACTAATCCAGACCATATGGACGTCATC
CCCCAATGATGTGGTGAGCCCATCTGAGTTCAAGACCCAGATCCAGAGATATGCACCACGCTTC
GTTGGCTATAATCAGCAGGATGCTCAGGAATTCCTCCGTTTCCTTCTGGATGGCCTCCACAACG
AGGTGAACCGGGTGGCAGCAAGGCCTAAGCCCAGCCCTGAGAGCCTTGATCATCTCCCTGATGA
AGAGAAAGGGCGACAGATGTGGAGGAAGTATCTAGAAAGGGAAGACAGTCGGATTGGGGATCTC
TTCGTTGGGCAGCTAAAGAGCTCCCTGACGTGCACCGACTGCGGCTACTGCTCTACAGTGTTCG
ATCCCTTCTGGGACCTCTCGTTGCCCATTGCAAAGAGAGGCTATCCTGAAGTGACGTTAATGGA
TTGTATGAGGCTCTTCACCAAAGAGGATGTGTTGGATGGGGATGAGAAACCAACATGCTGCCGC
TGCCGGGCCAGAAAACGATGTATAAAGAAGTTCTCTGTCCAGAGGTTCCCAAAGATCTTGGTGC
TCCACCTGAAGCGGTTCTCAGAATCCAGGATACGAACCAGCAAGCTCACAACATTTGTGAATTT
CCCACTAAGAGACCTGGACTTGAGAGAATTTGCTTCAGAAAACACCAACCATGCTGTTTACAAC
CTGTATGCTGTGTCCAATCACTCCGGAACCACCATGGGAGGTCACTATACAGCCTACTGCCGAA
GTCCGGTTACGGGCGAATGGCACACTTTCAATGACTCCAGTGTCACACCCATGTCCTCCAGCCA
AGTGCGCACCAGCGACGCCTATTTGTTCTTCTATGAACTGGCCAGTCCACCCTCCCGTATGTAG
CATTGAGGAGCTACAACCCTTCCCTCTTCCCCTGTGGTGGCCCCACGTCCTAAGTTTTTTTTTA
AAAATTCAGAAAAAAAAACACCACAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006242861 ⟹ XP_006242923

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,411,470 - 44,439,668 (+)	NCBI
Rnor_6.0	8	48,403,985 - 48,432,525 (+)	NCBI
Rnor_5.0	8	47,020,039 - 47,048,354 (+)	NCBI

Sequence:

show sequence

AACGCGGGGTGTGGCTTGGCCAGCCCGGGCGCGATGAGGCTGCTGCCCGCTGGGTGGCGCCGAT
TTCCCGGGGAGGTCCTTTCTGGGCCCCCGGCGGAGGTGGGGGAGAGGCGGGCAGGCACCGAGCG
AGGCCAGGGAGCCCTCTGCGTCAGCCACTGCTCGCTGCGCCGCGCCAGTACCAGCCAGGACTCA
TCCGCAGCTCCATGCTTGTGCCCGGTTCGACTCGTCCATCCTCCGAGAAGAGGCAGCCCATGAG
GCTCCCAGTACCCACTGAGTACCACCCTGAAGGATGTCCCAGCTCTCCTCCACCCTGAAGCGCT
ATACAGAATCGTCCCGCTACACAGATGCCCCTTATGCCAAATCGGGCTATGGCACCTACACCCC
TTCTTCCTATGGGGCCAACCTGGCCGCCTCCTTCCTGGAGAAGGAAAAACTTGGTTTCAAGCCG
GTCTCCCCCACCAGCTTCCTCCCACGGCCCCGCACCTACGGCCCCTCCTCCATCCTGGACTGTG
ACAGGGGCCGCCCCCTGCTGAGATCTGACATCACTGGGGGTAGTAAGCGGTCTGAGAGCCAGAC
CCGTGGCAATGAAAGGCCCTCAGGCAGTGGACTCAACGGAGGCAGTGGATTTCCTTATGGAGTG
ACCAGCAACTCCCTCAGCTACCTGCCCATGAATGCCAGAGACCAGGGCGTGACCCTGGGCCAGA
AGAAATCGAACAGCCAATCAGACCTGGCCCGGGATTTCTCCAGCCTCCGGACCTCAGATAGCTA
CAGGACTTCAGATGGCTACCGGGCCTCAGATGGCTTTAGGATAGACCCCGGAAACCTGGGTCGC
AGCCCCATGCTGGCCCGCACACGTAAGGAGCTCTGTGCCCTGCAGGGCCTCTACCAAGCAGCCA
GCCGTTCTGAGTACCTAACAGACTATCTGGAGAACTATGGCCGCAAGGGCAGTGCACCACAGGT
GCTCACACAGGCCCCTCCCTCCCGAGTCCCCGAAGTCCTCAGTCCCACCTACCGACCAAGTGGC
CGCTACACACTGTGGGAGAAGAACAAGGGCCAGGCTTCTGGGCCCAGCCGCTCCACTTCTCCAG
GGCGAGACACCATGAATTCAAAGAGTGCCCAGGGTCTGGCTGGTCTTCGAAACCTTGGGAACAC
GTGCTTCATGAACTCAATTCTTCAGTGTCTGAGCAACACCCGCGAGTTGAGAGATTACTGCCTC
CAGAGGCTGTACATGCGGGACCTCGGCCATACCAGCAGTGCACACACAGCTCTCATGGAAGAGT
TTGCAAAACTAATCCAGACCATATGGACGTCATCCCCCAATGATGTGGTGAGCCCATCTGAGTT
CAAGACCCAGATCCAGAGATATGCACCACGCTTCGTTGGCTATAATCAGCAGGATGCTCAGGAA
TTCCTCCGTTTCCTTCTGGATGGCCTCCACAACGAGGTGAACCGGGTGGCAGCAAGGCCTAAGC
CCAGCCCTGAGAGCCTTGATCATCTCCCTGATGAAGAGAAAGGGCGACAGATGTGGAGGAAGTA
TCTAGAAAGGGAAGACAGTCGGATTGGGGATCTCTTCGTTGGGCAGCTAAAGAGCTCCCTGACG
TGCACCGACTGCGGCTACTGCTCTACAGTGTTCGATCCCTTCTGGGACCTCTCGTTGCCCATTG
CAAAGAGAGGCTATCCTGAAGTGACGTTAATGGATTGTATGAGGCTCTTCACCAAAGAGGATGT
GTTGGATGGGGATGAGAAACCAACATGCTGCCGCTGCCGGGCCAGAAAACGATGTATAAAGAAG
TTCTCTGTCCAGAGGTTCCCAAAGATCTTGGTGCTCCACCTGAAGCGGTTCTCAGAATCCAGGA
TACGAACCAGCAAGCTCACAACATTTGTGAATTTCCCACTAAGAGACCTGGACTTGAGAGAATT
TGCTTCAGAAAACACCAACCATGCTGTTTACAACCTGTATGCTGTGTCCAATCACTCCGGAACC
ACCATGGGAGGTCACTATACAGCCTACTGCCGAAGTCCGGTTACGGGCGAATGGCACACTTTCA
ATGACTCCAGTGTCACACCCATGTCCTCCAGCCAAGTGCGCACCAGCGACGCCTATTTGCTCTT
CTATGAACTGGCCAGTCCACCCTCCCGTATGTAGCATTGAGGAGCTACAACCCTTCCCTCTTCC
CTGTGGTGGCCCCACGTCCTAAGTTTTTTTTTAAAAATTCAGAAAAAAAAACACCACAAAAAAA
AAAAAAAAAACAAAAACACAACAAAATCCTGACACGTGAGAGAAATAAAGTAAAATAAAGCTGC
GGAGCAGACGTGGATGCGGCCTGGGCAGGGTCTGGAGTGAGGAGCCTGTCGGGGACGACGACTG
GTGCAGAGATGGATGGAGTCAGCCGCGTCCCTCAGCTCCCTGGTCGGCTCCTCTTGTTTGCATT
TTTAAGCTTGTGGTTTTACCTGTGTGTAATAAAAAACGGCCGCGGTCTGTGGGGCGAGGATCCT
CAGTTCACCTGCTGCCCCCAGTGCCACTCCTTCTGGGAGGACAGCGCCATCTGGAGCCTGCTGG
GAGCGTCGCTGCTGGATGGAGCTAGGGAGGAGCCTGCCCGGAGGCCGCCCTGCCTGGACCTGCT
CACCAGTCAGTCCAGAGAGGAACATCCATGAGCCAAGAGCCCTCTTAACGCTGCTAAGCCCAGG
GGTACAAATGAGGGTGACATCTTTGAAGAAAGCTGGTTTGGGTTTTCAAAAACCCAAGTCTTTT
TTTTTTTTTTAATTAACTAACGGAACGTGTTCCGACTGGAGATGTGGTCCTTCGCACCTCTCGT
CACAGCTGGGACGTGGGGCTGGCTCCCTGTTTCTGTTTTTGTTAGGTTTTCTGTTTTTGTTTGT
TTCTTCTCCAAATACAACTTTCCTAATGCTAGCCCCCTGTGGTGCTAGGTGAGTGTTGACCAGG
CCCAAGCGAAGTCACAGTAGACCTGGGATCTAAAGTTTTCTGTTTTGAAGTTGTTTTTTTTTTT
CCTTTAATATTTTGGATGGAATCTAGTTGCCTCCAAGAATTGTGCCTTATAGCATTTGGGGACC
AGGGGATAACTTCCCCTTCCTGAGATATCCCTCAGCTGCTTCCCTTTATACCCATGCCATGTTG
AAAGCCACTGGGGCATGTGGGCTCCTGCCCTGTGCCCTGGCTCGTTGTGCACTGCAGTGGTTAA
GAGGGAAGTGGGTAAACGGTGTTTCTTAAGATAGTGTATCAAGCTCTTCCCGCCACCCTCTTTC
CCACCCCTGGTCTGCTCCCAGCTGTTTGAAGGACAGCACAGGCCCCTTGTCCCTCAAGCCCCCC
CTTTAATTTATTCTCTTCTTAATACCCTTATTCCCCAAGCTTCCTGCCACCCATCCCTTTCTCA
GAGTCTCTTAGACAAAGGCCCTCTGGACTGAGCTTCTCAGGGACACCCACGACACCCCTTACCC
GCTCTAGGCATCAGTCTTTGGTCCTGCCCTGGGAGTGTGAGCCTGGTGCCTGGGGATGTCTCAT
AATTCTTTGCCGTGGGCTTGATTTCGCCCTGACATTAGACAAAAAAAAAAAAAAAAAAACTCCA
TGCTGTCCCAAGAGTCAGGCTACTCAGCACTACGGCATTTTGCACAGTGCATTTTGCACACCCA
CTGGTGGGCCTGGCTTATGCCCTCAGAACCTGGAGTGCTTGAGTGTCCCAGGTCAAGGCACCCT
AGAAAAGACACCCCGAGTTTGCCTGGCCTGATCCCCTTCTCTAGGGAAGACCTGTGACGTGAGC
CCAAGGGCTGGTGTACACTTGTTTACTATGTAAGCAAGAGTAGAATGTCTAGTTACAGTGGAGC
CTTGTACAGAATAAATAGTAGCTTTGAGAAGGAA

hide sequence

RefSeq Acc Id:

XM_006242863 ⟹ XP_006242925

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,429,217 - 44,439,668 (+)	NCBI
Rnor_6.0	8	48,421,789 - 48,432,525 (+)	NCBI
Rnor_5.0	8	47,020,039 - 47,048,354 (+)	NCBI

Sequence:

show sequence

CGGGTCAGCCAGTCCGCCGGAGCGCGAGCGCCGGGCCCGGTCGGTTGGCTGCGCGCGGTGGGGA
GGTTGAGGCGGAGGAGCGCGCGCTGGGCCCCTCAGTAGCGGTTACTGCCCCACGTCGCCGACGG
GGTCCTGTGGGATCTCCGCCGGCTTCGGTGTCACGGTTGTAGCAAGGCGCGGGGACTCCCCGTA
ACCCCTTGACCAGCAGCGTTGGGTTTGGGGCATAGCCCACCGCCCGCTCCGCAGCATGCGTACC
TCCTACACCGTGACCCTGCCCGAAGAGCCCCCCGCCGCCCCCTTTCCCGCTCTCGCCAAGGAGC
TGCGGCCGCGCTCCCCTCTGTCCCCGTCCCTGCTGCTCTCCACCTTCGTGGGGCTTCTGCTCAA
CAAAGCCAAGAATTCAAAGAGTGCCCAGGGTCTGGCTGGTCTTCGAAACCTTGGGAACACGTGC
TTCATGAACTCAATTCTTCAGTGTCTGAGCAACACCCGCGAGTTGAGAGATTACTGCCTCCAGA
GGCTGTACATGCGGGACCTCGGCCATACCAGCAGTGCACACACAGCTCTCATGGAAGAGTTTGC
AAAACTAATCCAGACCATATGGACGTCATCCCCCAATGATGTGGTGAGCCCATCTGAGTTCAAG
ACCCAGATCCAGAGATATGCACCACGCTTCGTTGGCTATAATCAGCAGGATGCTCAGGAATTCC
TCCGTTTCCTTCTGGATGGCCTCCACAACGAGGTGAACCGGGTGGCAGCAAGGCCTAAGCCCAG
CCCTGAGAGCCTTGATCATCTCCCTGATGAAGAGAAAGGGCGACAGATGTGGAGGAAGTATCTA
GAAAGGGAAGACAGTCGGATTGGGGATCTCTTCGTTGGGCAGCTAAAGAGCTCCCTGACGTGCA
CCGACTGCGGCTACTGCTCTACAGTGTTCGATCCCTTCTGGGACCTCTCGTTGCCCATTGCAAA
GAGAGGCTATCCTGAAGTGACGTTAATGGATTGTATGAGGCTCTTCACCAAAGAGGATGTGTTG
GATGGGGATGAGAAACCAACATGCTGCCGCTGCCGGGCCAGAAAACGATGTATAAAGAAGTTCT
CTGTCCAGAGGTTCCCAAAGATCTTGGTGCTCCACCTGAAGCGGTTCTCAGAATCCAGGATACG
AACCAGCAAGCTCACAACATTTGTGAATTTCCCACTAAGAGACCTGGACTTGAGAGAATTTGCT
TCAGAAAACACCAACCATGCTGTTTACAACCTGTATGCTGTGTCCAATCACTCCGGAACCACCA
TGGGAGGTCACTATACAGCCTACTGCCGAAGTCCGGTTACGGGCGAATGGCACACTTTCAATGA
CTCCAGTGTCACACCCATGTCCTCCAGCCAAGTGCGCACCAGCGACGCCTATTTGCTCTTCTAT
GAACTGGCCAGTCCACCCTCCCGTATGTAGCATTGAGGAGCTACAACCCTTCCCTCTTCCCTGT
GGTGGCCCCACGTCCTAAGTTTTTTTTTAAAAATTCAGAAAAAAAAACACCACAAAAAAAAAAA
AAAAAACAAAAACACAACAAAATCCTGACACGTGAGAGAAATAAAGTAAAATAAAGCTGCGGAG
CAGACGTGGATGCGGCCTGGGCAGGGTCTGGAGTGAGGAGCCTGTCGGGGACGACGACTGGTGC
AGAGATGGATGGAGTCAGCCGCGTCCCTCAGCTCCCTGGTCGGCTCCTCTTGTTTGCATTTTTA
AGCTTGTGGTTTTACCTGTGTGTAATAAAAAACGGCCGCGGTCTGTGGGGCGAGGATCCTCAGT
TCACCTGCTGCCCCCAGTGCCACTCCTTCTGGGAGGACAGCGCCATCTGGAGCCTGCTGGGAGC
GTCGCTGCTGGATGGAGCTAGGGAGGAGCCTGCCCGGAGGCCGCCCTGCCTGGACCTGCTCACC
AGTCAGTCCAGAGAGGAACATCCATGAGCCAAGAGCCCTCTTAACGCTGCTAAGCCCAGGGGTA
CAAATGAGGGTGACATCTTTGAAGAAAGCTGGTTTGGGTTTTCAAAAACCCAAGTCTTTTTTTT
TTTTTTAATTAACTAACGGAACGTGTTCCGACTGGAGATGTGGTCCTTCGCACCTCTCGTCACA
GCTGGGACGTGGGGCTGGCTCCCTGTTTCTGTTTTTGTTAGGTTTTCTGTTTTTGTTTGTTTCT
TCTCCAAATACAACTTTCCTAATGCTAGCCCCCTGTGGTGCTAGGTGAGTGTTGACCAGGCCCA
AGCGAAGTCACAGTAGACCTGGGATCTAAAGTTTTCTGTTTTGAAGTTGTTTTTTTTTTTCCTT
TAATATTTTGGATGGAATCTAGTTGCCTCCAAGAATTGTGCCTTATAGCATTTGGGGACCAGGG
GATAACTTCCCCTTCCTGAGATATCCCTCAGCTGCTTCCCTTTATACCCATGCCATGTTGAAAG
CCACTGGGGCATGTGGGCTCCTGCCCTGTGCCCTGGCTCGTTGTGCACTGCAGTGGTTAAGAGG
GAAGTGGGTAAACGGTGTTTCTTAAGATAGTGTATCAAGCTCTTCCCGCCACCCTCTTTCCCAC
CCCTGGTCTGCTCCCAGCTGTTTGAAGGACAGCACAGGCCCCTTGTCCCTCAAGCCCCCCCTTT
AATTTATTCTCTTCTTAATACCCTTATTCCCCAAGCTTCCTGCCACCCATCCCTTTCTCAGAGT
CTCTTAGACAAAGGCCCTCTGGACTGAGCTTCTCAGGGACACCCACGACACCCCTTACCCGCTC
TAGGCATCAGTCTTTGGTCCTGCCCTGGGAGTGTGAGCCTGGTGCCTGGGGATGTCTCATAATT
CTTTGCCGTGGGCTTGATTTCGCCCTGACATTAGACAAAAAAAAAAAAAAAAAAACTCCATGCT
GTCCCAAGAGTCAGGCTACTCAGCACTACGGCATTTTGCACAGTGCATTTTGCACACCCACTGG
TGGGCCTGGCTTATGCCCTCAGAACCTGGAGTGCTTGAGTGTCCCAGGTCAAGGCACCCTAGAA
AAGACACCCCGAGTTTGCCTGGCCTGATCCCCTTCTCTAGGGAAGACCTGTGACGTGAGCCCAA
GGGCTGGTGTACACTTGTTTACTATGTAAGCAAGAGTAGAATGTCTAGTTACAGTGGAGCCTTG
TACAGAATAAATAGTAGCTTTGAGAAGGAA

hide sequence

RefSeq Acc Id:

XM_008766138 ⟹ XP_008764360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,411,457 - 44,439,668 (+)	NCBI
Rnor_6.0	8	48,403,993 - 48,432,525 (+)	NCBI

Sequence:

show sequence

GTGTGGCTTGGCCAGCCCGGGCGCGATGAGGCTGCTGCCCGCTGGGTGGCGCCGATTTCCCGGG
GAGGTCCTTTCTGGGCCCCCGGCGGAGGTGGGGGAGAGGCGGGCAGGCACCGAGCGAGGCCAGG
GAGCCCTCTGCGTCAGCCACTGCTCGCTGCGCCGCGCCAGTACCAGCCAGGACTCATCCGCAGC
TCCATGCTTGTGCCCGGTTCGACTCGTCCATCCTCCGAGAAGAGGCAGAATTCAAAGAGTGCCC
AGGGTCTGGCTGGTCTTCGAAACCTTGGGAACACGTGCTTCATGAACTCAATTCTTCAGTGTCT
GAGCAACACCCGCGAGTTGAGAGATTACTGCCTCCAGAGGCTGTACATGCGGGACCTCGGCCAT
ACCAGCAGTGCACACACAGCTCTCATGGAAGAGTTTGCAAAACTAATCCAGACCATATGGACGT
CATCCCCCAATGATGTGGTGAGCCCATCTGAGTTCAAGACCCAGATCCAGAGATATGCACCACG
CTTCGTTGGCTATAATCAGCAGGATGCTCAGGAATTCCTCCGTTTCCTTCTGGATGGCCTCCAC
AACGAGGTGAACCGGGTGGCAGCAAGGCCTAAGCCCAGCCCTGAGAGCCTTGATCATCTCCCTG
ATGAAGAGAAAGGGCGACAGATGTGGAGGAAGTATCTAGAAAGGGAAGACAGTCGGATTGGGGA
TCTCTTCGTTGGGCAGCTAAAGAGCTCCCTGACGTGCACCGACTGCGGCTACTGCTCTACAGTG
TTCGATCCCTTCTGGGACCTCTCGTTGCCCATTGCAAAGAGAGGCTATCCTGAAGTGACGTTAA
TGGATTGTATGAGGCTCTTCACCAAAGAGGATGTGTTGGATGGGGATGAGAAACCAACATGCTG
CCGCTGCCGGGCCAGAAAACGATGTATAAAGAAGTTCTCTGTCCAGAGGTTCCCAAAGATCTTG
GTGCTCCACCTGAAGCGGTTCTCAGAATCCAGGATACGAACCAGCAAGCTCACAACATTTGTGA
ATTTCCCACTAAGAGACCTGGACTTGAGAGAATTTGCTTCAGAAAACACCAACCATGCTGTTTA
CAACCTGTATGCTGTGTCCAATCACTCCGGAACCACCATGGGAGGTCACTATACAGCCTACTGC
CGAAGTCCGGTTACGGGCGAATGGCACACTTTCAATGACTCCAGTGTCACACCCATGTCCTCCA
GCCAAGTGCGCACCAGCGACGCCTATTTGCTCTTCTATGAACTGGCCAGTCCACCCTCCCGTAT
GTAGCATTGAGGAGCTACAACCCTTCCCTCTTCCCTGTGGTGGCCCCACGTCCTAAGTTTTTTT
TTAAAAATTCAGAAAAAAAAACACCACAAAAAAAAAAAAAAAAACAAAAACACAACAAAATCCT
GACACGTGAGAGAAATAAAGTAAAATAAAGCTGCGGAGCAGACGTGGATGCGGCCTGGGCAGGG
TCTGGAGTGAGGAGCCTGTCGGGGACGACGACTGGTGCAGAGATGGATGGAGTCAGCCGCGTCC
CTCAGCTCCCTGGTCGGCTCCTCTTGTTTGCATTTTTAAGCTTGTGGTTTTACCTGTGTGTAAT
AAAAAACGGCCGCGGTCTGTGGGGCGAGGATCCTCAGTTCACCTGCTGCCCCCAGTGCCACTCC
TTCTGGGAGGACAGCGCCATCTGGAGCCTGCTGGGAGCGTCGCTGCTGGATGGAGCTAGGGAGG
AGCCTGCCCGGAGGCCGCCCTGCCTGGACCTGCTCACCAGTCAGTCCAGAGAGGAACATCCATG
AGCCAAGAGCCCTCTTAACGCTGCTAAGCCCAGGGGTACAAATGAGGGTGACATCTTTGAAGAA
AGCTGGTTTGGGTTTTCAAAAACCCAAGTCTTTTTTTTTTTTTTAATTAACTAACGGAACGTGT
TCCGACTGGAGATGTGGTCCTTCGCACCTCTCGTCACAGCTGGGACGTGGGGCTGGCTCCCTGT
TTCTGTTTTTGTTAGGTTTTCTGTTTTTGTTTGTTTCTTCTCCAAATACAACTTTCCTAATGCT
AGCCCCCTGTGGTGCTAGGTGAGTGTTGACCAGGCCCAAGCGAAGTCACAGTAGACCTGGGATC
TAAAGTTTTCTGTTTTGAAGTTGTTTTTTTTTTTCCTTTAATATTTTGGATGGAATCTAGTTGC
CTCCAAGAATTGTGCCTTATAGCATTTGGGGACCAGGGGATAACTTCCCCTTCCTGAGATATCC
CTCAGCTGCTTCCCTTTATACCCATGCCATGTTGAAAGCCACTGGGGCATGTGGGCTCCTGCCC
TGTGCCCTGGCTCGTTGTGCACTGCAGTGGTTAAGAGGGAAGTGGGTAAACGGTGTTTCTTAAG
ATAGTGTATCAAGCTCTTCCCGCCACCCTCTTTCCCACCCCTGGTCTGCTCCCAGCTGTTTGAA
GGACAGCACAGGCCCCTTGTCCCTCAAGCCCCCCCTTTAATTTATTCTCTTCTTAATACCCTTA
TTCCCCAAGCTTCCTGCCACCCATCCCTTTCTCAGAGTCTCTTAGACAAAGGCCCTCTGGACTG
AGCTTCTCAGGGACACCCACGACACCCCTTACCCGCTCTAGGCATCAGTCTTTGGTCCTGCCCT
GGGAGTGTGAGCCTGGTGCCTGGGGATGTCTCATAATTCTTTGCCGTGGGCTTGATTTCGCCCT
GACATTAGACAAAAAAAAAAAAAAAAAAACTCCATGCTGTCCCAAGAGTCAGGCTACTCAGCAC
TACGGCATTTTGCACAGTGCATTTTGCACACCCACTGGTGGGCCTGGCTTATGCCCTCAGAACC
TGGAGTGCTTGAGTGTCCCAGGTCAAGGCACCCTAGAAAAGACACCCCGAGTTTGCCTGGCCTG
ATCCCCTTCTCTAGGGAAGACCTGTGACGTGAGCCCAAGGGCTGGTGTACACTTGTTTACTATG
TAAGCAAGAGTAGAATGTCTAGTTACAGTGGAGCCTTGTACAGAATAAATAGTAGCTTTGAGAA
GGAA

hide sequence

RefSeq Acc Id:

XM_008766139 ⟹ XP_008764361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,431,302 - 44,439,668 (+)	NCBI
Rnor_6.0	8	48,423,823 - 48,432,525 (+)	NCBI

Sequence:

show sequence

CTGCCCTCAAGCCAATAGAAGCGTTGGGACTAGAGTACTAACCATGGAGGGTGAATACACTTCC
CACCTGGAAGCAGGAGTGCCTCTGTGGACTGGTGACCCCTCCCTTTCCCCACCCTCACTAGTGC
TGGGATAAGTACCTGAGTTGAGAGCCCGCCTTGGTGGATGTGGACATGCTCACCGGTGGTAGGA
TGCTTTCTGTCTCTACAGCCTGTTTAGACCGATGTCGTCTCGGGCACAGGGGAATTCAAAGAGT
GCCCAGGGTCTGGCTGGTCTTCGAAACCTTGGGAACACGTGCTTCATGAACTCAATTCTTCAGT
GTCTGAGCAACACCCGCGAGTTGAGAGATTACTGCCTCCAGAGGCTGTACATGCGGGACCTCGG
CCATACCAGCAGTGCACACACAGCTCTCATGGAAGAGTTTGCAAAACTAATCCAGACCATATGG
ACGTCATCCCCCAATGATGTGGTGAGCCCATCTGAGTTCAAGACCCAGATCCAGAGATATGCAC
CACGCTTCGTTGGCTATAATCAGCAGGATGCTCAGGAATTCCTCCGTTTCCTTCTGGATGGCCT
CCACAACGAGGTGAACCGGGTGGCAGCAAGGCCTAAGCCCAGCCCTGAGAGCCTTGATCATCTC
CCTGATGAAGAGAAAGGGCGACAGATGTGGAGGAAGTATCTAGAAAGGGAAGACAGTCGGATTG
GGGATCTCTTCGTTGGGCAGCTAAAGAGCTCCCTGACGTGCACCGACTGCGGCTACTGCTCTAC
AGTGTTCGATCCCTTCTGGGACCTCTCGTTGCCCATTGCAAAGAGAGGCTATCCTGAAGTGACG
TTAATGGATTGTATGAGGCTCTTCACCAAAGAGGATGTGTTGGATGGGGATGAGAAACCAACAT
GCTGCCGCTGCCGGGCCAGAAAACGATGTATAAAGAAGTTCTCTGTCCAGAGGTTCCCAAAGAT
CTTGGTGCTCCACCTGAAGCGGTTCTCAGAATCCAGGATACGAACCAGCAAGCTCACAACATTT
GTGAATTTCCCACTAAGAGACCTGGACTTGAGAGAATTTGCTTCAGAAAACACCAACCATGCTG
TTTACAACCTGTATGCTGTGTCCAATCACTCCGGAACCACCATGGGAGGTCACTATACAGCCTA
CTGCCGAAGTCCGGTTACGGGCGAATGGCACACTTTCAATGACTCCAGTGTCACACCCATGTCC
TCCAGCCAAGTGCGCACCAGCGACGCCTATTTGCTCTTCTATGAACTGGCCAGTCCACCCTCCC
GTATGTAGCATTGAGGAGCTACAACCCTTCCCTCTTCCCTGTGGTGGCCCCACGTCCTAAGTTT
TTTTTTAAAAATTCAGAAAAAAAAACACCACAAAAAAAAAAAAAAAAACAAAAACACAACAAAA
TCCTGACACGTGAGAGAAATAAAGTAAAATAAAGCTGCGGAGCAGACGTGGATGCGGCCTGGGC
AGGGTCTGGAGTGAGGAGCCTGTCGGGGACGACGACTGGTGCAGAGATGGATGGAGTCAGCCGC
GTCCCTCAGCTCCCTGGTCGGCTCCTCTTGTTTGCATTTTTAAGCTTGTGGTTTTACCTGTGTG
TAATAAAAAACGGCCGCGGTCTGTGGGGCGAGGATCCTCAGTTCACCTGCTGCCCCCAGTGCCA
CTCCTTCTGGGAGGACAGCGCCATCTGGAGCCTGCTGGGAGCGTCGCTGCTGGATGGAGCTAGG
GAGGAGCCTGCCCGGAGGCCGCCCTGCCTGGACCTGCTCACCAGTCAGTCCAGAGAGGAACATC
CATGAGCCAAGAGCCCTCTTAACGCTGCTAAGCCCAGGGGTACAAATGAGGGTGACATCTTTGA
AGAAAGCTGGTTTGGGTTTTCAAAAACCCAAGTCTTTTTTTTTTTTTTAATTAACTAACGGAAC
GTGTTCCGACTGGAGATGTGGTCCTTCGCACCTCTCGTCACAGCTGGGACGTGGGGCTGGCTCC
CTGTTTCTGTTTTTGTTAGGTTTTCTGTTTTTGTTTGTTTCTTCTCCAAATACAACTTTCCTAA
TGCTAGCCCCCTGTGGTGCTAGGTGAGTGTTGACCAGGCCCAAGCGAAGTCACAGTAGACCTGG
GATCTAAAGTTTTCTGTTTTGAAGTTGTTTTTTTTTTTCCTTTAATATTTTGGATGGAATCTAG
TTGCCTCCAAGAATTGTGCCTTATAGCATTTGGGGACCAGGGGATAACTTCCCCTTCCTGAGAT
ATCCCTCAGCTGCTTCCCTTTATACCCATGCCATGTTGAAAGCCACTGGGGCATGTGGGCTCCT
GCCCTGTGCCCTGGCTCGTTGTGCACTGCAGTGGTTAAGAGGGAAGTGGGTAAACGGTGTTTCT
TAAGATAGTGTATCAAGCTCTTCCCGCCACCCTCTTTCCCACCCCTGGTCTGCTCCCAGCTGTT
TGAAGGACAGCACAGGCCCCTTGTCCCTCAAGCCCCCCCTTTAATTTATTCTCTTCTTAATACC
CTTATTCCCCAAGCTTCCTGCCACCCATCCCTTTCTCAGAGTCTCTTAGACAAAGGCCCTCTGG
ACTGAGCTTCTCAGGGACACCCACGACACCCCTTACCCGCTCTAGGCATCAGTCTTTGGTCCTG
CCCTGGGAGTGTGAGCCTGGTGCCTGGGGATGTCTCATAATTCTTTGCCGTGGGCTTGATTTCG
CCCTGACATTAGACAAAAAAAAAAAAAAAAAAACTCCATGCTGTCCCAAGAGTCAGGCTACTCA
GCACTACGGCATTTTGCACAGTGCATTTTGCACACCCACTGGTGGGCCTGGCTTATGCCCTCAG
AACCTGGAGTGCTTGAGTGTCCCAGGTCAAGGCACCCTAGAAAAGACACCCCGAGTTTGCCTGG
CCTGATCCCCTTCTCTAGGGAAGACCTGTGACGTGAGCCCAAGGGCTGGTGTACACTTGTTTAC
TATGTAAGCAAGAGTAGAATGTCTAGTTACAGTGGAGCCTTGTACAGAATAAATAGTAGCTTTG
AGAAGGAA

hide sequence

RefSeq Acc Id:

XM_039080702 ⟹ XP_038936630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,411,510 - 44,439,668 (+)	NCBI

RefSeq Acc Id:

XM_039080703 ⟹ XP_038936631

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,412,186 - 44,439,668 (+)	NCBI

RefSeq Acc Id:

XM_039080704 ⟹ XP_038936632

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	44,415,907 - 44,439,668 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_446226	(Get FASTA)	NCBI Sequence Viewer
	XP_006242923	(Get FASTA)	NCBI Sequence Viewer
	XP_006242925	(Get FASTA)	NCBI Sequence Viewer
	XP_008764360	(Get FASTA)	NCBI Sequence Viewer
	XP_008764361	(Get FASTA)	NCBI Sequence Viewer
	XP_038936630	(Get FASTA)	NCBI Sequence Viewer
	XP_038936631	(Get FASTA)	NCBI Sequence Viewer
	XP_038936632	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF14189	(Get FASTA)	NCBI Sequence Viewer
	AAF14190	(Get FASTA)	NCBI Sequence Viewer
	AAF17574	(Get FASTA)	NCBI Sequence Viewer
	AAF17575	(Get FASTA)	NCBI Sequence Viewer
	AAH85719	(Get FASTA)	NCBI Sequence Viewer
	EDL95274	(Get FASTA)	NCBI Sequence Viewer
	EDL95275	(Get FASTA)	NCBI Sequence Viewer
	EDL95276	(Get FASTA)	NCBI Sequence Viewer
	EDL95277	(Get FASTA)	NCBI Sequence Viewer
	EDL95278	(Get FASTA)	NCBI Sequence Viewer
	Q5U349	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446226 ⟸ NM_053774

- UniProtKB:

Q9R083 (UniProtKB/Swiss-Prot), Q9QXL4 (UniProtKB/Swiss-Prot), Q9QXL3 (UniProtKB/Swiss-Prot), Q5U349 (UniProtKB/Swiss-Prot), Q9R084 (UniProtKB/Swiss-Prot), A0A8L2Q4I7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSQLSSTLKRYTESSRYTDAPYAKSGYGTYTPSSYGANLAASFLEKEKLGFKPVSPTSFLPRPR
TYGPSSILDCDRGRPLLRSDITGGSKRSESQTRGNERPSGSGLNGGSGFPYGVTSNSLSYLPMN
ARDQGVTLGQKKSNSQSDLARDFSSLRTSDSYRTSDGYRASDGFRIDPGNLGRSPMLARTRKEL
CALQGLYQATSRSEYLTDYLENYGRKGSAPQVLTQAPPSRVPEVLSPTYRPSGRYTLWEKNKGQ
ASGPSRSTSPGRDTMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHT
SSAHTALMEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN
EVNRVAARPKPSPESLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVF
DPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRCIKKFSVQRFPKILV
LHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCR
SPVTGEWHTFNDSSVTPMSSSQVRTSDAYLFFYELASPPSRM

hide sequence

RefSeq Acc Id:	XP_006242923 ⟸ XM_006242861
- Peptide Label:	isoform X1
- UniProtKB:	Q9R083 (UniProtKB/Swiss-Prot), Q9QXL4 (UniProtKB/Swiss-Prot), Q9QXL3 (UniProtKB/Swiss-Prot), Q9R084 (UniProtKB/Swiss-Prot), Q5U349 (UniProtKB/Swiss-Prot), A0A8L2Q4I7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSQLSSTLKRYTESSRYTDAPYAKSGYGTYTPSSYGANLAASFLEKEKLGFKPVSPTSFLPRPR TYGPSSILDCDRGRPLLRSDITGGSKRSESQTRGNERPSGSGLNGGSGFPYGVTSNSLSYLPMN ARDQGVTLGQKKSNSQSDLARDFSSLRTSDSYRTSDGYRASDGFRIDPGNLGRSPMLARTRKEL CALQGLYQAASRSEYLTDYLENYGRKGSAPQVLTQAPPSRVPEVLSPTYRPSGRYTLWEKNKGQ ASGPSRSTSPGRDTMNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHT SSAHTALMEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN EVNRVAARPKPSPESLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVF DPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRCIKKFSVQRFPKILV LHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCR SPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPSRM hide sequence

RefSeq Acc Id:	XP_006242925 ⟸ XM_006242863
- Peptide Label:	isoform X2
- UniProtKB:	Q5U349 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRTSYTVTLPEEPPAAPFPALAKELRPRSPLSPSLLLSTFVGLLLNKAKNSKSAQGLAGLRNLG NTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTSSAHTALMEEFAKLIQTIWTSSPNDVVSPS EFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVAARPKPSPESLDHLPDEEKGRQMWR KYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKE DVLDGDEKPTCCRCRARKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLR EFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYL LFYELASPPSRM hide sequence

RefSeq Acc Id:

XP_008764360 ⟸ XM_008766138

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLVPGSTRPSSEKRQNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHT
SSAHTALMEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHN
EVNRVAARPKPSPESLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVF
DPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRCIKKFSVQRFPKILV
LHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCR
SPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPSRM

hide sequence

RefSeq Acc Id:

XP_008764361 ⟸ XM_008766139

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSSRAQGNSKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTSSAHTALM
EEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVAAR
PKPSPESLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSL
PIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRCIKKFSVQRFPKILVLHLKRFSE
SRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPVTGEWH
TFNDSSVTPMSSSQVRTSDAYLLFYELASPPSRM

hide sequence

RefSeq Acc Id:

ENSRNOP00000030257 ⟸ ENSRNOT00000036051

RefSeq Acc Id:

ENSRNOP00000009975 ⟸ ENSRNOT00000009975

RefSeq Acc Id:	XP_038936630 ⟸ XM_039080702
- Peptide Label:	isoform X1
- UniProtKB:	Q9R083 (UniProtKB/Swiss-Prot), Q9QXL4 (UniProtKB/Swiss-Prot), Q9QXL3 (UniProtKB/Swiss-Prot), Q5U349 (UniProtKB/Swiss-Prot), Q9R084 (UniProtKB/Swiss-Prot), A0A8L2Q4I7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936631 ⟸ XM_039080703
- Peptide Label:	isoform X1
- UniProtKB:	Q9R083 (UniProtKB/Swiss-Prot), Q9QXL4 (UniProtKB/Swiss-Prot), Q9QXL3 (UniProtKB/Swiss-Prot), Q5U349 (UniProtKB/Swiss-Prot), Q9R084 (UniProtKB/Swiss-Prot), A0A8L2Q4I7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038936632 ⟸ XM_039080704
- Peptide Label:	isoform X1
- UniProtKB:	Q9R083 (UniProtKB/Swiss-Prot), Q9QXL4 (UniProtKB/Swiss-Prot), Q9QXL3 (UniProtKB/Swiss-Prot), Q5U349 (UniProtKB/Swiss-Prot), Q9R084 (UniProtKB/Swiss-Prot), A0A8L2Q4I7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000078529 ⟸ ENSRNOT00000104911

Protein Domains

USP

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U349-F1-model_v2	AlphaFold	Q5U349	1-618	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621073	AgrOrtholog
BioCyc Gene	G2FUF-30741	BioCyc
Ensembl Genes	ENSRNOG00000006663	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000009975.4	UniProtKB/TrEMBL
	ENSRNOP00000030257	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000078529	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000009975.8	UniProtKB/TrEMBL
	ENSRNOT00000036051	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000104911	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	Cysteine proteinases	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7193298	IMAGE-MGC_LOAD
InterPro	Papain-like_cys_pep_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Peptidase_C19_UCH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	USP_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	USP_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:115771	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93284	IMAGE-MGC_LOAD
NCBI Gene	115771	ENTREZGENE
PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	UCH	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Usp2	PhenoGen
PROSITE	USP_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	USP_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	USP_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF54001	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8L2Q4I7	ENTREZGENE, UniProtKB/TrEMBL
	A6J3V3_RAT	UniProtKB/TrEMBL
	A6J3V5_RAT	UniProtKB/TrEMBL
	Q5U349	ENTREZGENE
	Q9QXL3	ENTREZGENE
	Q9QXL4	ENTREZGENE
	Q9R083	ENTREZGENE
	Q9R084	ENTREZGENE
	UBP2_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q9QXL3	UniProtKB/Swiss-Prot
	Q9QXL4	UniProtKB/Swiss-Prot
	Q9R083	UniProtKB/Swiss-Prot
	Q9R084	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Name	Description	Reference	Status
2006-03-30	Usp2	ubiquitin specific peptidase 2	ubiquitin specific protease 2	Name updated	1299863	APPROVED
2004-02-26	Usp2	ubiquitin specific protease 2		Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Usp2			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_regulation	induced during postnatal development of the testis	634247

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD