Glb1l2 (galactosidase, beta 1-like 2) - Rat Genome Database

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Gene: Glb1l2 (galactosidase, beta 1-like 2) Rattus norvegicus
Analyze
Symbol: Glb1l2
Name: galactosidase, beta 1-like 2
RGD ID: 1564436
Description: Predicted to enable beta-galactosidase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to be active in vacuole. Orthologous to human GLB1L2 (galactosidase beta 1 like 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: beta-galactosidase-1-like protein 2; LOC503194; RGD1564436; similar to Hypothetical protein MGC47419
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2825,115,462 - 25,166,843 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl825,115,462 - 25,166,783 (-)Ensembl
Rnor_6.0827,805,139 - 27,853,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl827,807,301 - 27,852,996 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0827,825,297 - 27,873,045 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4826,363,298 - 26,434,952 (-)NCBIRGSC3.4rn4RGSC3.4
Celera826,674,632 - 26,725,056 (-)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
vacuole  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Glb1l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2825,115,462 - 25,166,843 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl825,115,462 - 25,166,783 (-)Ensembl
Rnor_6.0827,805,139 - 27,853,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl827,807,301 - 27,852,996 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0827,825,297 - 27,873,045 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4826,363,298 - 26,434,952 (-)NCBIRGSC3.4rn4RGSC3.4
Celera826,674,632 - 26,725,056 (-)NCBICelera
Cytogenetic Map8q13NCBI
GLB1L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811134,331,988 - 134,376,324 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl11134,331,874 - 134,378,341 (+)EnsemblGRCh38hg38GRCh38
GRCh3711134,201,882 - 134,246,218 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611133,707,016 - 133,751,428 (+)NCBINCBI36hg18NCBI36
Celera11131,374,433 - 131,418,732 (+)NCBI
Cytogenetic Map11q25NCBI
HuRef11130,156,667 - 130,200,929 (+)NCBIHuRef
CHM1_111134,088,351 - 134,132,731 (+)NCBICHM1_1
T2T-CHM13v2.011134,373,617 - 134,417,937 (+)NCBI
Glb1l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39926,674,338 - 26,717,769 (-)NCBIGRCm39mm39
GRCm39 Ensembl926,674,340 - 26,717,764 (-)Ensembl
GRCm38926,763,044 - 26,806,473 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl926,763,044 - 26,806,468 (-)EnsemblGRCm38mm10GRCm38
MGSCv37926,570,629 - 26,614,002 (-)NCBIGRCm37mm9NCBIm37
MGSCv36926,512,490 - 26,555,863 (-)NCBImm8
Celera924,022,342 - 24,065,727 (-)NCBICelera
Cytogenetic Map9A4NCBI
GLB1L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111133,052,848 - 133,087,425 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11133,052,848 - 133,087,425 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011129,184,833 - 129,233,585 (+)NCBIMhudiblu_PPA_v0panPan3
LOC606786
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.15752,134 - 791,824 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl5752,779 - 791,793 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha5872,463 - 912,033 (-)NCBI
ROS_Cfam_1.05707,456 - 747,032 (-)NCBI
ROS_Cfam_1.0 Ensembl5707,461 - 889,387 (-)Ensembl
UMICH_Zoey_3.15740,452 - 780,030 (-)NCBI
UNSW_CanFamBas_1.05741,112 - 780,874 (-)NCBI
UU_Cfam_GSD_1.05778,965 - 818,552 (-)NCBI
LOC101976490
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947116,298,111 - 116,325,176 (+)NCBI
SpeTri2.0NW_0049366841,277,765 - 1,304,851 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100520582
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl960,918,278 - 60,996,980 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1960,954,513 - 60,993,584 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2967,574,960 - 67,614,264 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLB1L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11125,411,615 - 125,454,995 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1125,411,752 - 125,454,965 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666043594,128 - 636,377 (-)NCBIVero_WHO_p1.0

Position Markers
BI281084  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2825,117,205 - 25,117,361 (+)MAPPERmRatBN7.2
Rnor_6.0827,806,876 - 27,807,031NCBIRnor6.0
Rnor_5.0827,827,035 - 27,827,190UniSTSRnor5.0
RGSC_v3.4826,362,873 - 26,363,028UniSTSRGSC3.4
Celera826,674,207 - 26,674,362UniSTS
RH 3.4 Map8242.7UniSTS
Cytogenetic Map8q13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)82266233067662330Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:97
Count of miRNA genes:71
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000037790
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 14 1 1 35 20 1
Low 1 29 38 35 35 7 10 74 21 11 7
Below cutoff 18 6 18 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000037790   ⟹   ENSRNOP00000037844
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl825,117,631 - 25,157,831 (-)Ensembl
Rnor_6.0 Ensembl827,807,301 - 27,852,996 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097030   ⟹   ENSRNOP00000077046
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl825,115,462 - 25,166,772 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109550   ⟹   ENSRNOP00000093666
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl825,116,354 - 25,166,732 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116810   ⟹   ENSRNOP00000096852
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl825,116,354 - 25,166,783 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118429   ⟹   ENSRNOP00000077667
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl825,118,922 - 25,166,723 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000120253   ⟹   ENSRNOP00000091556
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl825,117,631 - 25,166,720 (-)Ensembl
RefSeq Acc Id: NM_001192018   ⟹   NP_001178947
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2825,117,631 - 25,166,720 (-)NCBI
Rnor_6.0827,807,301 - 27,852,996 (-)NCBI
Rnor_5.0827,825,297 - 27,873,045 (-)NCBI
Celera826,674,632 - 26,725,056 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006242738   ⟹   XP_006242800
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2825,116,352 - 25,166,824 (-)NCBI
Rnor_6.0827,805,139 - 27,853,079 (-)NCBI
Rnor_5.0827,825,297 - 27,873,045 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595859   ⟹   XP_017451348
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2825,116,352 - 25,166,829 (-)NCBI
Rnor_6.0827,805,139 - 27,853,080 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081998   ⟹   XP_038937926
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2825,115,462 - 25,166,843 (-)NCBI
RefSeq Acc Id: XM_039081999   ⟹   XP_038937927
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2825,115,462 - 25,166,838 (-)NCBI
RefSeq Acc Id: XM_039082000   ⟹   XP_038937928
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2825,115,462 - 25,166,830 (-)NCBI
RefSeq Acc Id: XM_039082001   ⟹   XP_038937929
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2825,115,462 - 25,153,917 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001178947   ⟸   NM_001192018
- UniProtKB: D3ZHQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242800   ⟸   XM_006242738
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017451348   ⟸   XM_017595859
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000037844   ⟸   ENSRNOT00000037790
RefSeq Acc Id: XP_038937926   ⟸   XM_039081998
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038937927   ⟸   XM_039081999
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038937928   ⟸   XM_039082000
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038937929   ⟸   XM_039082001
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000077667   ⟸   ENSRNOT00000118429
RefSeq Acc Id: ENSRNOP00000096852   ⟸   ENSRNOT00000116810
RefSeq Acc Id: ENSRNOP00000091556   ⟸   ENSRNOT00000120253
RefSeq Acc Id: ENSRNOP00000093666   ⟸   ENSRNOT00000109550
RefSeq Acc Id: ENSRNOP00000077046   ⟸   ENSRNOT00000097030

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHQ5-F1-model_v2 AlphaFold D3ZHQ5 1-652 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695816
Promoter ID:EPDNEW_R6340
Type:multiple initiation site
Name:Glb1l2_1
Description:galactosidase, beta 1-like 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0827,853,030 - 27,853,090EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
8 27810824 27810825 T G snv SR/JrHsd (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564436 AgrOrtholog
BioCyc Gene G2FUF-31312 BioCyc
Ensembl Genes ENSRNOG00000007561 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000037844.4 UniProtKB/TrEMBL
  ENSRNOP00000077046 ENTREZGENE
  ENSRNOP00000077046.1 UniProtKB/TrEMBL
  ENSRNOP00000077667 ENTREZGENE
  ENSRNOP00000077667.1 UniProtKB/TrEMBL
  ENSRNOP00000091556.1 UniProtKB/TrEMBL
  ENSRNOP00000093666 ENTREZGENE
  ENSRNOP00000093666.1 UniProtKB/TrEMBL
  ENSRNOP00000096852 ENTREZGENE
  ENSRNOP00000096852.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037790.5 UniProtKB/TrEMBL
  ENSRNOT00000097030 ENTREZGENE
  ENSRNOT00000097030.1 UniProtKB/TrEMBL
  ENSRNOT00000109550 ENTREZGENE
  ENSRNOT00000109550.1 UniProtKB/TrEMBL
  ENSRNOT00000116810 ENTREZGENE
  ENSRNOT00000116810.1 UniProtKB/TrEMBL
  ENSRNOT00000118429 ENTREZGENE
  ENSRNOT00000118429.1 UniProtKB/TrEMBL
  ENSRNOT00000120253.1 UniProtKB/TrEMBL
InterPro B-gal_1-like UniProtKB/TrEMBL
  Galactose-bd-like UniProtKB/TrEMBL
  Gly_Hdrlase_35_cat UniProtKB/TrEMBL
  Glyco_hydro_35_CS UniProtKB/TrEMBL
  Glyco_hydro_catalytic_core UniProtKB/TrEMBL
  Glycoside_Hdrlase_35 UniProtKB/TrEMBL
KEGG Report rno:503194 UniProtKB/TrEMBL
NCBI Gene 503194 ENTREZGENE
PANTHER Glyco_hydro_35 UniProtKB/TrEMBL
Pfam Glyco_hydro_35 UniProtKB/TrEMBL
PhenoGen Glb1l2 PhenoGen
PIRSF B-gal UniProtKB/TrEMBL
PRINTS GLHYDRLASE35 UniProtKB/TrEMBL
PROSITE GLYCOSYL_HYDROL_F35 UniProtKB/TrEMBL
Superfamily-SCOP Gal_bind_like UniProtKB/TrEMBL
  Glyco_hydro_cat UniProtKB/TrEMBL
UniProt A0A8I5Y144_RAT UniProtKB/TrEMBL
  A0A8I5Y841_RAT UniProtKB/TrEMBL
  A0A8I6AFV3_RAT UniProtKB/TrEMBL
  A0A8I6AJ82_RAT UniProtKB/TrEMBL
  A0A8I6ARG8_RAT UniProtKB/TrEMBL
  D3ZHQ5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Glb1l2  galactosidase, beta 1-like 2  RGD1564436_predicted  similar to Hypothetical protein MGC47419 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564436_predicted  similar to Hypothetical protein MGC47419 (predicted)  LOC503194  similar to Hypothetical protein MGC47419  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC503194  similar to Hypothetical protein MGC47419      Symbol and Name status set to provisional 70820 PROVISIONAL