D3Got89 Marker Search Result - Rat Genome Database

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Marker: D3Got89

Symbol: D3Got89
Previously known as: oxsts440; D8Got217; OT07.47; 
RGD ID: 43698
Expected Size: 290 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2851,212,307 - 51,212,597 (+)MAPPERmRatBN7.2
Rnor_6.0855,295,522 - 55,295,811NCBIRnor6.0
Rnor_5.0853,892,495 - 53,892,784UniSTSRnor5.0
RGSC_v3.4854,224,133 - 54,224,423RGDRGSC3.4
RGSC_v3.4854,224,134 - 54,224,423UniSTSRGSC3.4
RGSC_v3.1854,243,188 - 54,243,477RGD
Celera850,759,229 - 50,759,518UniSTS
RH 3.4 Map31151.6UniSTS
RH 3.4 Map31151.6RGD
RH 2.0 Map3766.7RGD
Cytogenetic Map8q23-q24UniSTS
Is Marker For: Genes:   Ppp2r1b  




#
Reference Title
Reference Citation
1. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
2. UniSTS Pipeline RGD automated pipelines
3. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
4. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer CAGTAGGCATCTGGCCAAGTA
Reverse Primer GCCCTCTTCTGTCCTGTAGACATA
 


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1304764Ppp2r1bprotein phosphatase 2 scaffold subunit A beta85119586051228442Rat
GenBank Nucleotide AU028946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 60 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat

1 to 10 of 60 rows


Database
Acc Id
Source(s)
NCBI Gene 315648 UniSTS